Wall clock time and date at job start Sat Apr 11 2020 06:30:06
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53004 * 1
3 3 H 1.09000 * 109.61130 * 2 1
4 4 C 1.53368 * 109.61248 * 239.65474 * 2 1 3
5 5 N 1.46957 * 108.63835 * 190.66166 * 4 2 1
6 6 C 1.34776 * 120.59673 * 235.20629 * 5 4 2
7 7 O 1.21604 * 120.00094 * 359.97438 * 6 5 4
8 8 C 1.47424 * 120.00168 * 180.02562 * 6 5 4
9 9 C 1.39977 * 120.15826 * 269.99703 * 8 6 5
10 10 F 1.35099 * 120.08912 * 359.97438 * 9 8 6
11 11 C 1.38103 * 119.83450 * 180.02562 * 9 8 6
12 12 C 1.38608 * 120.16009 * 359.97438 * 11 9 8
13 13 F 1.35102 * 119.83043 * 179.97438 * 12 11 9
14 14 C 1.38592 * 120.33137 * 0.27996 * 12 11 9
15 15 C 1.38108 * 120.16475 * 359.48257 * 14 12 11
16 16 F 1.35101 * 120.08557 * 180.23396 * 15 14 12
17 17 C 1.46964 * 118.81115 * 55.48011 * 5 4 2
18 18 C 1.53806 * 108.39988 * 304.48486 * 17 5 4
19 19 H 1.08997 * 109.53753 * 169.30697 * 18 17 5
20 20 C 1.53008 * 109.88089 * 289.76587 * 18 17 5
21 21 N 1.46966 * 108.57964 * 49.63543 * 18 17 5
22 22 C 1.36934 * 120.59588 * 124.62630 * 21 18 17
23 23 H 1.07998 * 120.00154 * 208.92108 * 22 21 18
24 24 C 1.38820 * 119.99939 * 28.92487 * 22 21 18
25 25 N 1.31625 * 119.99601 * 16.89812 * 24 22 21
26 26 Si 1.86792 * 119.99964 * 196.89756 * 24 22 21
27 27 H 1.48507 * 109.47206 * 94.06576 * 26 24 22
28 28 H 1.48498 * 109.47038 * 214.06117 * 26 24 22
29 29 H 1.48497 * 109.47175 * 334.06394 * 26 24 22
30 30 H 1.08994 * 109.46840 * 180.33991 * 1 2 3
31 31 H 1.08993 * 109.46977 * 300.34286 * 1 2 3
32 32 H 1.09007 * 109.46679 * 60.34014 * 1 2 3
33 33 H 1.09002 * 109.60739 * 70.91782 * 4 2 1
34 34 H 1.09004 * 109.75185 * 310.49481 * 4 2 1
35 35 H 1.07996 * 119.92438 * 180.02562 * 11 9 8
36 36 H 1.08001 * 119.91798 * 179.74372 * 14 12 11
37 37 H 1.09004 * 109.61091 * 64.26507 * 17 5 4
38 38 H 1.09005 * 109.61183 * 184.77974 * 17 5 4
39 39 H 1.09000 * 109.46880 * 179.24358 * 20 18 17
40 40 H 1.09002 * 109.46799 * 299.23815 * 20 18 17
41 41 H 1.08991 * 109.47058 * 59.24475 * 20 18 17
42 42 H 0.97005 * 119.99470 * 180.02562 * 25 24 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8959 1.0268 0.0000
4 6 2.0448 -0.7299 -1.2468
5 7 3.4915 -0.9437 -1.1020
6 6 4.3476 -0.5056 -2.0463
7 8 3.9249 0.0720 -3.0294
8 6 5.7964 -0.7276 -1.8880
9 6 6.5862 0.2241 -1.2325
10 9 6.0231 1.3502 -0.7427
11 6 7.9428 0.0095 -1.0884
12 6 8.5225 -1.1451 -1.5906
13 9 9.8504 -1.3479 -1.4464
14 6 7.7477 -2.0894 -2.2455
15 6 6.3890 -1.8909 -2.3929
16 9 5.6345 -2.8147 -3.0274
17 6 3.9877 -1.6491 0.0880
18 6 3.4734 -0.9144 1.3375
19 1 3.6669 -1.5207 2.2223
20 6 4.1807 0.4354 1.4754
21 7 2.0266 -0.7006 1.1927
22 6 1.1568 -1.1465 2.1517
23 1 0.1483 -1.4215 1.8802
24 6 1.5712 -1.2449 3.4729
25 7 2.6562 -0.6149 3.8710
26 14 0.5892 -2.2716 4.6857
27 1 1.1626 -3.6398 4.7543
28 1 0.6490 -1.6420 6.0293
29 1 -0.8244 -2.3491 4.2378
30 1 -0.3633 -1.0276 0.0061
31 1 -0.3633 0.5191 0.8868
32 1 -0.3633 0.5086 -0.8931
33 1 1.8514 -0.1234 -2.1316
34 1 1.5409 -1.6914 -1.3451
35 1 8.5535 0.7426 -0.5825
36 1 8.2070 -2.9847 -2.6378
37 1 3.6186 -2.6748 0.0856
38 1 5.0777 -1.6499 0.0849
39 1 3.8018 0.9559 2.3549
40 1 5.2534 0.2742 1.5827
41 1 3.9907 1.0375 0.5870
42 1 2.9460 -0.6840 4.7941
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000880456857.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:30:06
Heat of formation + Delta-G solvation = -104.745908 kcal
Electronic energy + Delta-G solvation = -31757.149074 eV
Core-core repulsion = 27096.119204 eV
Total energy + Delta-G solvation = -4661.029870 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 342.130 amu
Computer time = 0.86 seconds
Orbital eigenvalues (eV)
-49.45792 -49.36636 -49.25194 -40.11634 -38.46563 -37.29797 -34.15737 -32.90190
-31.31326 -31.00736 -30.97902 -27.99712 -26.53307 -25.75930 -24.20371 -23.51604
-23.28037 -21.06429 -20.29554 -18.93576 -18.74842 -18.18341 -17.57040 -16.65855
-16.28926 -16.24083 -16.05812 -15.87143 -15.60723 -15.54184 -15.21549 -15.09033
-14.70859 -14.49895 -14.07004 -13.95426 -13.58314 -13.21438 -12.90264 -12.72643
-12.56417 -12.25207 -12.20022 -11.89416 -11.78575 -11.50067 -11.20623 -11.09899
-10.83157 -10.68032 -10.61449 -10.22674 -10.15084 -9.95338 -9.76338 -9.53270
-9.29237 -9.12835 -8.56852 -8.31060 -6.71130 -5.86736 -3.31141 0.29317
0.47375 2.57272 2.70171 3.10740 3.25390 3.32276 3.40941 3.41071
3.79708 3.85192 4.27926 4.38561 4.41372 4.43816 5.10360 5.21459
5.27641 5.30021 5.32426 5.37427 5.52306 5.62354 5.65938 5.82486
5.99735 6.01427 6.11271 6.18282 6.24042 6.31540 6.40322 6.55146
6.70470 6.77584 6.86356 6.95063 7.06018 7.44095 7.58729 7.68669
7.79571 8.26588 8.35402 9.12115 9.73682 10.30754 11.20507
Molecular weight = 342.13amu
Principal moments of inertia in cm(-1)
A = 0.014448 B = 0.004084 C = 0.003706
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1937.503813 B = 6854.549142 C = 7554.280713
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.134 4.134
2 C 0.155 3.845
3 H 0.033 0.967
4 C 0.100 3.900
5 N -0.576 5.576
6 C 0.559 3.441
7 O -0.538 6.538
8 C -0.195 4.195
9 C 0.199 3.801
10 F -0.104 7.104
11 C -0.202 4.202
12 C 0.173 3.827
13 F -0.120 7.120
14 C -0.204 4.204
15 C 0.191 3.809
16 F -0.112 7.112
17 C 0.084 3.916
18 C 0.180 3.820
19 H 0.109 0.891
20 C -0.141 4.141
21 N -0.580 5.580
22 C -0.252 4.252
23 H 0.073 0.927
24 C 0.005 3.995
25 N -0.898 5.898
26 Si 0.901 3.099
27 H -0.288 1.288
28 H -0.292 1.292
29 H -0.279 1.279
30 H 0.056 0.944
31 H 0.065 0.935
32 H 0.042 0.958
33 H 0.083 0.917
34 H 0.067 0.933
35 H 0.162 0.838
36 H 0.161 0.839
37 H 0.068 0.932
38 H 0.065 0.935
39 H 0.078 0.922
40 H 0.024 0.976
41 H 0.027 0.973
42 H 0.254 0.746
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 10.620 -1.925 -9.715 14.521
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.192 4.192
2 C 0.047 3.953
3 H 0.051 0.949
4 C -0.024 4.024
5 N -0.306 5.306
6 C 0.345 3.655
7 O -0.416 6.416
8 C -0.200 4.200
9 C 0.178 3.822
10 F -0.082 7.082
11 C -0.222 4.222
12 C 0.153 3.847
13 F -0.098 7.098
14 C -0.224 4.224
15 C 0.171 3.829
16 F -0.090 7.090
17 C -0.040 4.040
18 C 0.072 3.928
19 H 0.126 0.874
20 C -0.199 4.199
21 N -0.303 5.303
22 C -0.382 4.382
23 H 0.090 0.910
24 C -0.194 4.194
25 N -0.542 5.542
26 Si 0.731 3.269
27 H -0.216 1.216
28 H -0.219 1.219
29 H -0.204 1.204
30 H 0.075 0.925
31 H 0.084 0.916
32 H 0.061 0.939
33 H 0.101 0.899
34 H 0.086 0.914
35 H 0.180 0.820
36 H 0.179 0.821
37 H 0.087 0.913
38 H 0.083 0.917
39 H 0.097 0.903
40 H 0.043 0.957
41 H 0.046 0.954
42 H 0.064 0.936
Dipole moment (debyes) X Y Z Total
from point charges 10.393 -1.617 -10.030 14.534
hybrid contribution -0.251 -0.558 0.826 1.027
sum 10.143 -2.174 -9.205 13.868
Atomic orbital electron populations
1.21744 0.95019 1.01733 1.00720 1.20791 0.93436 0.94126 0.86904
0.94906 1.22393 0.78299 1.01201 1.00499 1.47993 1.07416 1.54674
1.20504 1.17619 0.84500 0.79981 0.83446 1.90785 1.77948 1.42776
1.30119 1.20048 0.96718 0.96409 1.06809 1.16798 0.89739 0.82853
0.92767 1.91655 1.84989 1.47193 1.84328 1.21009 0.94001 1.00028
1.07162 1.16866 0.77937 0.93399 0.96460 1.91579 1.29996 1.94814
1.93381 1.20940 0.92130 1.02950 1.06361 1.16758 0.88008 0.85326
0.92836 1.91606 1.75601 1.63328 1.78451 1.22834 0.97830 0.96659
0.86700 1.20808 0.83338 0.94991 0.93643 0.87384 1.22036 0.97101
0.99297 1.01508 1.44146 1.01690 1.64463 1.19953 1.19210 0.95757
1.36749 0.86454 0.90951 1.25057 0.98152 0.99391 0.96754 1.69999
1.25638 1.42344 1.16206 0.86303 0.79762 0.80102 0.80740 1.21557
1.21866 1.20446 0.92494 0.91551 0.93931 0.89888 0.91428 0.81989
0.82121 0.91329 0.91687 0.90308 0.95683 0.95369 0.93638
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -2.41 7.95 37.16 0.30 -2.12 16
2 C 0.15 3.12 3.23 -67.48 -0.22 2.90 16
3 H 0.03 0.72 7.40 -51.93 -0.38 0.34 16
4 C 0.10 1.83 5.90 -3.60 -0.02 1.81 16
5 N -0.58 -10.58 2.60 -173.49 -0.45 -11.04 16
6 C 0.56 10.23 6.42 -12.52 -0.08 10.15 16
7 O -0.54 -11.24 16.51 5.27 0.09 -11.15 16
8 C -0.19 -2.92 3.62 -104.86 -0.38 -3.30 16
9 C 0.20 2.71 7.17 -38.98 -0.28 2.43 16
10 F -0.10 -1.61 15.53 2.25 0.03 -1.58 16
11 C -0.20 -2.11 9.99 -39.49 -0.39 -2.51 16
12 C 0.17 1.69 7.30 -39.31 -0.29 1.40 16
13 F -0.12 -1.11 17.26 2.25 0.04 -1.08 16
14 C -0.20 -2.00 9.99 -39.50 -0.39 -2.39 16
15 C 0.19 2.44 7.29 -38.98 -0.28 2.15 16
16 F -0.11 -1.53 16.83 2.25 0.04 -1.49 16
17 C 0.08 1.52 5.92 -3.37 -0.02 1.50 16
18 C 0.18 3.85 2.34 -67.25 -0.16 3.70 16
19 H 0.11 2.61 6.03 -51.93 -0.31 2.30 16
20 C -0.14 -2.95 8.47 37.16 0.31 -2.64 16
21 N -0.58 -13.20 2.68 -156.76 -0.42 -13.62 16
22 C -0.25 -6.27 8.60 -15.06 -0.13 -6.40 16
23 H 0.07 1.77 6.22 -52.49 -0.33 1.45 16
24 C 0.01 0.13 4.91 -17.43 -0.09 0.05 16
25 N -0.90 -23.75 10.13 55.49 0.56 -23.19 16
26 Si 0.90 20.47 29.59 -169.99 -5.03 15.44 16
27 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16
28 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16
29 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16
30 H 0.06 1.01 7.33 -51.93 -0.38 0.63 16
31 H 0.07 1.28 7.73 -51.93 -0.40 0.88 16
32 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16
33 H 0.08 1.51 6.99 -51.93 -0.36 1.15 16
34 H 0.07 1.20 8.12 -51.93 -0.42 0.78 16
35 H 0.16 1.32 8.06 -52.49 -0.42 0.90 16
36 H 0.16 1.15 8.06 -52.49 -0.42 0.73 16
37 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16
38 H 0.06 1.05 6.21 -51.93 -0.32 0.73 16
39 H 0.08 1.90 7.17 -51.93 -0.37 1.53 16
40 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16
41 H 0.03 0.58 6.24 -51.93 -0.32 0.26 16
42 H 0.25 6.60 8.31 -40.82 -0.34 6.26 16
LS Contribution 349.82 15.07 5.27 5.27
Total: -1.00 -28.32 349.82 -6.85 -35.16
By element:
Atomic # 1 Polarization: 5.39 SS G_CDS: -4.86 Total: 0.53 kcal
Atomic # 6 Polarization: 8.86 SS G_CDS: -2.12 Total: 6.74 kcal
Atomic # 7 Polarization: -47.54 SS G_CDS: -0.31 Total: -47.85 kcal
Atomic # 8 Polarization: -11.24 SS G_CDS: 0.09 Total: -11.15 kcal
Atomic # 9 Polarization: -4.26 SS G_CDS: 0.11 Total: -4.15 kcal
Atomic # 14 Polarization: 20.47 SS G_CDS: -5.03 Total: 15.44 kcal
Total LS contribution 5.27 Total: 5.27 kcal
Total: -28.32 -6.85 -35.16 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000880456857.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -69.584 kcal
(2) G-P(sol) polarization free energy of solvation -28.316 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.900 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.846 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.162 kcal
(6) G-S(sol) free energy of system = (1) + (5) -104.746 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.86 seconds