Wall clock time and date at job start Sat Apr 11 2020 06:30:05
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53004 * 1
3 3 H 1.09000 * 109.61130 * 2 1
4 4 C 1.53368 * 109.61248 * 239.65474 * 2 1 3
5 5 N 1.46957 * 108.63835 * 190.66166 * 4 2 1
6 6 C 1.34776 * 120.59673 * 235.20629 * 5 4 2
7 7 O 1.21604 * 120.00094 * 359.97438 * 6 5 4
8 8 C 1.47424 * 120.00168 * 180.02562 * 6 5 4
9 9 C 1.39977 * 120.15826 * 269.99703 * 8 6 5
10 10 F 1.35099 * 120.08912 * 359.97438 * 9 8 6
11 11 C 1.38103 * 119.83450 * 180.02562 * 9 8 6
12 12 C 1.38608 * 120.16009 * 359.97438 * 11 9 8
13 13 F 1.35102 * 119.83043 * 179.97438 * 12 11 9
14 14 C 1.38592 * 120.33137 * 0.27996 * 12 11 9
15 15 C 1.38108 * 120.16475 * 359.48257 * 14 12 11
16 16 F 1.35101 * 120.08557 * 180.23396 * 15 14 12
17 17 C 1.46964 * 118.81115 * 55.48011 * 5 4 2
18 18 C 1.53806 * 108.39988 * 304.48486 * 17 5 4
19 19 H 1.08997 * 109.53753 * 169.30697 * 18 17 5
20 20 C 1.53008 * 109.88089 * 289.76587 * 18 17 5
21 21 N 1.46966 * 108.57964 * 49.63543 * 18 17 5
22 22 C 1.36934 * 120.59588 * 124.62630 * 21 18 17
23 23 H 1.07998 * 120.00154 * 208.92108 * 22 21 18
24 24 C 1.38820 * 119.99939 * 28.92487 * 22 21 18
25 25 N 1.31625 * 119.99601 * 16.89812 * 24 22 21
26 26 Si 1.86792 * 119.99964 * 196.89756 * 24 22 21
27 27 H 1.48507 * 109.47206 * 94.06576 * 26 24 22
28 28 H 1.48498 * 109.47038 * 214.06117 * 26 24 22
29 29 H 1.48497 * 109.47175 * 334.06394 * 26 24 22
30 30 H 1.08994 * 109.46840 * 180.33991 * 1 2 3
31 31 H 1.08993 * 109.46977 * 300.34286 * 1 2 3
32 32 H 1.09007 * 109.46679 * 60.34014 * 1 2 3
33 33 H 1.09002 * 109.60739 * 70.91782 * 4 2 1
34 34 H 1.09004 * 109.75185 * 310.49481 * 4 2 1
35 35 H 1.07996 * 119.92438 * 180.02562 * 11 9 8
36 36 H 1.08001 * 119.91798 * 179.74372 * 14 12 11
37 37 H 1.09004 * 109.61091 * 64.26507 * 17 5 4
38 38 H 1.09005 * 109.61183 * 184.77974 * 17 5 4
39 39 H 1.09000 * 109.46880 * 179.24358 * 20 18 17
40 40 H 1.09002 * 109.46799 * 299.23815 * 20 18 17
41 41 H 1.08991 * 109.47058 * 59.24475 * 20 18 17
42 42 H 0.97005 * 119.99470 * 180.02562 * 25 24 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8959 1.0268 0.0000
4 6 2.0448 -0.7299 -1.2468
5 7 3.4915 -0.9437 -1.1020
6 6 4.3476 -0.5056 -2.0463
7 8 3.9249 0.0720 -3.0294
8 6 5.7964 -0.7276 -1.8880
9 6 6.5862 0.2241 -1.2325
10 9 6.0231 1.3502 -0.7427
11 6 7.9428 0.0095 -1.0884
12 6 8.5225 -1.1451 -1.5906
13 9 9.8504 -1.3479 -1.4464
14 6 7.7477 -2.0894 -2.2455
15 6 6.3890 -1.8909 -2.3929
16 9 5.6345 -2.8147 -3.0274
17 6 3.9877 -1.6491 0.0880
18 6 3.4734 -0.9144 1.3375
19 1 3.6669 -1.5207 2.2223
20 6 4.1807 0.4354 1.4754
21 7 2.0266 -0.7006 1.1927
22 6 1.1568 -1.1465 2.1517
23 1 0.1483 -1.4215 1.8802
24 6 1.5712 -1.2449 3.4729
25 7 2.6562 -0.6149 3.8710
26 14 0.5892 -2.2716 4.6857
27 1 1.1626 -3.6398 4.7543
28 1 0.6490 -1.6420 6.0293
29 1 -0.8244 -2.3491 4.2378
30 1 -0.3633 -1.0276 0.0061
31 1 -0.3633 0.5191 0.8868
32 1 -0.3633 0.5086 -0.8931
33 1 1.8514 -0.1234 -2.1316
34 1 1.5409 -1.6914 -1.3451
35 1 8.5535 0.7426 -0.5825
36 1 8.2070 -2.9847 -2.6378
37 1 3.6186 -2.6748 0.0856
38 1 5.0777 -1.6499 0.0849
39 1 3.8018 0.9559 2.3549
40 1 5.2534 0.2742 1.5827
41 1 3.9907 1.0375 0.5870
42 1 2.9460 -0.6840 4.7941
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000880456857.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:30:05
Heat of formation + Delta-G solvation = -119.043531 kcal
Electronic energy + Delta-G solvation = -31757.769066 eV
Core-core repulsion = 27096.119204 eV
Total energy + Delta-G solvation = -4661.649862 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 342.130 amu
Computer time = 0.91 seconds
Orbital eigenvalues (eV)
-50.36127 -50.33914 -50.23249 -41.50408 -39.59862 -38.81184 -35.78963 -34.54063
-33.03283 -32.16532 -31.86970 -29.76151 -27.99826 -27.29124 -25.79459 -24.58712
-24.43773 -22.71072 -21.68343 -20.43209 -19.82469 -19.15133 -18.95633 -17.86835
-17.58616 -17.30957 -17.23486 -17.10970 -16.83118 -16.62864 -16.48530 -16.27254
-16.04887 -15.80662 -15.48603 -15.42420 -15.31121 -14.78257 -14.35294 -13.91971
-13.74070 -13.57651 -13.48621 -13.14259 -13.08500 -12.93284 -12.88339 -12.78948
-12.48872 -12.35502 -12.30392 -11.99870 -11.82794 -11.62790 -11.40587 -11.17100
-10.46635 -10.18895 -10.11713 -9.88960 -8.55088 -7.79503 -5.25595 -0.65821
-0.41529 1.19186 1.50666 1.54117 1.60378 1.71263 1.93654 2.22453
2.55321 2.86959 2.94307 3.07653 3.34588 3.47935 3.49122 3.60036
4.07667 4.10318 4.23136 4.35262 4.37506 4.39055 4.44312 4.45392
4.53102 4.53849 4.66268 4.72609 4.78820 4.80215 4.92835 5.04971
5.14894 5.27112 5.33110 5.37158 5.49903 5.68298 5.75481 5.85140
6.24161 6.45902 6.83369 7.21725 7.88279 8.42442 9.25356
Molecular weight = 342.13amu
Principal moments of inertia in cm(-1)
A = 0.014448 B = 0.004084 C = 0.003706
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1937.503813 B = 6854.549142 C = 7554.280713
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.125 4.125
2 C 0.153 3.847
3 H 0.011 0.989
4 C 0.106 3.894
5 N -0.581 5.581
6 C 0.560 3.440
7 O -0.571 6.571
8 C -0.219 4.219
9 C 0.180 3.820
10 F -0.122 7.122
11 C -0.185 4.185
12 C 0.188 3.812
13 F -0.110 7.110
14 C -0.180 4.180
15 C 0.184 3.816
16 F -0.120 7.120
17 C 0.098 3.902
18 C 0.178 3.822
19 H 0.082 0.918
20 C -0.120 4.120
21 N -0.593 5.593
22 C -0.253 4.253
23 H 0.075 0.925
24 C -0.040 4.040
25 N -0.921 5.921
26 Si 0.957 3.043
27 H -0.288 1.288
28 H -0.302 1.302
29 H -0.273 1.273
30 H 0.059 0.941
31 H 0.047 0.953
32 H 0.071 0.929
33 H 0.085 0.915
34 H 0.077 0.923
35 H 0.187 0.813
36 H 0.194 0.806
37 H 0.073 0.927
38 H 0.087 0.913
39 H 0.042 0.958
40 H 0.043 0.957
41 H 0.022 0.978
42 H 0.247 0.753
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 12.229 -3.233 -10.648 16.534
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.183 4.183
2 C 0.046 3.954
3 H 0.028 0.972
4 C -0.017 4.017
5 N -0.310 5.310
6 C 0.347 3.653
7 O -0.451 6.451
8 C -0.225 4.225
9 C 0.160 3.840
10 F -0.100 7.100
11 C -0.204 4.204
12 C 0.168 3.832
13 F -0.088 7.088
14 C -0.199 4.199
15 C 0.163 3.837
16 F -0.098 7.098
17 C -0.026 4.026
18 C 0.071 3.929
19 H 0.100 0.900
20 C -0.179 4.179
21 N -0.316 5.316
22 C -0.383 4.383
23 H 0.093 0.907
24 C -0.237 4.237
25 N -0.567 5.567
26 Si 0.787 3.213
27 H -0.215 1.215
28 H -0.229 1.229
29 H -0.198 1.198
30 H 0.078 0.922
31 H 0.066 0.934
32 H 0.090 0.910
33 H 0.103 0.897
34 H 0.095 0.905
35 H 0.204 0.796
36 H 0.211 0.789
37 H 0.091 0.909
38 H 0.105 0.895
39 H 0.061 0.939
40 H 0.062 0.938
41 H 0.041 0.959
42 H 0.057 0.943
Dipole moment (debyes) X Y Z Total
from point charges 12.004 -2.935 -10.980 16.531
hybrid contribution -0.669 -0.117 1.067 1.265
sum 11.335 -3.053 -9.913 15.364
Atomic orbital electron populations
1.21656 0.93350 1.02017 1.01284 1.20875 0.94877 0.92912 0.86763
0.97171 1.22251 0.78787 1.01376 0.99324 1.48051 1.07481 1.54779
1.20676 1.18086 0.85924 0.78729 0.82592 1.90752 1.79018 1.44029
1.31342 1.19916 0.94780 0.98350 1.09412 1.16972 0.90789 0.82392
0.93870 1.91608 1.85476 1.48155 1.84801 1.21201 0.92671 1.00604
1.05968 1.16797 0.78151 0.92819 0.95460 1.91620 1.29345 1.94671
1.93156 1.21188 0.90587 1.03634 1.04499 1.16840 0.88936 0.84674
0.93232 1.91587 1.76056 1.63466 1.78704 1.22609 0.99042 0.96039
0.84903 1.20734 0.83060 0.94857 0.94267 0.90047 1.21789 0.98016
0.98731 0.99354 1.44360 1.02114 1.64830 1.20276 1.19457 0.96125
1.35800 0.86924 0.90744 1.25647 0.99237 1.00634 0.98140 1.70146
1.26960 1.43660 1.15941 0.85415 0.78929 0.78555 0.78426 1.21544
1.22907 1.19786 0.92212 0.93356 0.91020 0.89705 0.90473 0.79553
0.78879 0.90906 0.89480 0.93885 0.93810 0.95895 0.94331
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -4.45 7.95 71.98 0.57 -3.87 16
2 C 0.15 6.20 3.23 45.03 0.15 6.34 16
3 H 0.01 0.47 7.40 -2.39 -0.02 0.46 16
4 C 0.11 3.88 5.90 86.42 0.51 4.39 16
5 N -0.58 -21.13 2.60 -821.05 -2.13 -23.26 16
6 C 0.56 20.31 6.42 86.66 0.56 20.86 16
7 O -0.57 -24.00 16.51 -4.04 -0.07 -24.07 16
8 C -0.22 -6.31 3.62 -20.02 -0.07 -6.39 16
9 C 0.18 4.65 7.17 22.66 0.16 4.81 16
10 F -0.12 -3.77 15.53 44.97 0.70 -3.07 16
11 C -0.19 -3.30 9.99 22.33 0.22 -3.08 16
12 C 0.19 2.90 7.30 22.44 0.16 3.07 16
13 F -0.11 -1.56 17.26 44.97 0.78 -0.79 16
14 C -0.18 -2.82 9.99 22.32 0.22 -2.60 16
15 C 0.18 4.25 7.29 22.66 0.17 4.42 16
16 F -0.12 -3.06 16.83 44.97 0.76 -2.31 16
17 C 0.10 3.48 5.92 86.56 0.51 3.99 16
18 C 0.18 7.72 2.34 45.18 0.11 7.82 16
19 H 0.08 4.01 6.03 -2.39 -0.01 4.00 16
20 C -0.12 -5.14 8.47 71.98 0.61 -4.53 16
21 N -0.59 -27.31 2.68 -649.86 -1.74 -29.05 16
22 C -0.25 -12.67 8.60 84.04 0.72 -11.95 16
23 H 0.07 3.64 6.22 -2.91 -0.02 3.62 16
24 C -0.04 -2.08 4.91 84.86 0.42 -1.67 16
25 N -0.92 -49.93 10.13 21.65 0.22 -49.71 16
26 Si 0.96 42.47 29.59 68.60 2.03 44.50 16
27 H -0.29 -12.69 7.11 99.48 0.71 -11.98 16
28 H -0.30 -13.79 7.11 99.48 0.71 -13.08 16
29 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16
30 H 0.06 2.07 7.33 -2.39 -0.02 2.06 16
31 H 0.05 1.87 7.73 -2.39 -0.02 1.85 16
32 H 0.07 2.10 8.14 -2.38 -0.02 2.08 16
33 H 0.08 3.07 6.99 -2.39 -0.02 3.05 16
34 H 0.08 2.66 8.12 -2.38 -0.02 2.64 16
35 H 0.19 2.37 8.06 -2.91 -0.02 2.35 16
36 H 0.19 1.78 8.06 -2.91 -0.02 1.76 16
37 H 0.07 2.53 8.14 -2.39 -0.02 2.51 16
38 H 0.09 2.70 6.21 -2.38 -0.01 2.69 16
39 H 0.04 2.14 7.17 -2.39 -0.02 2.12 16
40 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16
41 H 0.02 0.97 6.24 -2.39 -0.01 0.95 16
42 H 0.25 13.21 8.31 -92.70 -0.77 12.44 16
Total: -1.00 -62.61 349.82 6.63 -55.99
By element:
Atomic # 1 Polarization: 9.07 SS G_CDS: 1.08 Total: 10.15 kcal
Atomic # 6 Polarization: 16.60 SS G_CDS: 5.02 Total: 21.62 kcal
Atomic # 7 Polarization: -98.36 SS G_CDS: -3.66 Total: -102.02 kcal
Atomic # 8 Polarization: -24.00 SS G_CDS: -0.07 Total: -24.07 kcal
Atomic # 9 Polarization: -8.39 SS G_CDS: 2.23 Total: -6.16 kcal
Atomic # 14 Polarization: 42.47 SS G_CDS: 2.03 Total: 44.50 kcal
Total: -62.61 6.63 -55.99 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000880456857.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -63.058 kcal
(2) G-P(sol) polarization free energy of solvation -62.614 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.672 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.628 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.986 kcal
(6) G-S(sol) free energy of system = (1) + (5) -119.044 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.91 seconds