Wall clock time and date at job start Sat Apr 11 2020 06:30:43
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53004 * 1
3 3 H 1.09004 * 109.49975 * 2 1
4 4 C 1.53195 * 109.49733 * 120.06101 * 2 1 3
5 5 N 1.46923 * 108.77416 * 174.58745 * 4 2 1
6 6 C 1.36941 * 120.63258 * 126.37168 * 5 4 2
7 7 H 1.08005 * 119.99741 * 332.62609 * 6 5 4
8 8 C 1.38808 * 120.00144 * 152.62695 * 6 5 4
9 9 N 1.31622 * 120.00074 * 159.37218 * 8 6 5
10 10 Si 1.86800 * 120.00103 * 339.36867 * 8 6 5
11 11 H 1.48504 * 109.46685 * 92.92930 * 10 8 6
12 12 H 1.48501 * 109.47365 * 212.93054 * 10 8 6
13 13 H 1.48499 * 109.47156 * 332.93104 * 10 8 6
14 14 C 1.46929 * 118.73867 * 306.38724 * 5 4 2
15 15 C 1.53193 * 108.77142 * 53.61419 * 14 5 4
16 16 C 1.53039 * 109.49660 * 239.93038 * 2 1 3
17 17 H 1.09004 * 109.46000 * 58.66701 * 16 2 1
18 18 N 1.46493 * 109.46106 * 298.70181 * 16 2 1
19 19 C 1.34778 * 119.99649 * 154.99783 * 18 16 2
20 20 O 1.21588 * 120.00523 * 0.02562 * 19 18 16
21 21 C 1.47583 * 119.99763 * 180.02562 * 19 18 16
22 22 C 1.39740 * 120.13424 * 359.97438 * 21 19 18
23 23 C 1.37747 * 119.94574 * 179.97438 * 22 21 19
24 24 C 1.38717 * 120.21270 * 359.97438 * 23 22 21
25 25 F 1.35100 * 119.86474 * 180.02562 * 24 23 22
26 26 C 1.38658 * 120.26988 * 0.04214 * 24 23 22
27 27 F 1.35102 * 119.97680 * 179.97438 * 26 24 23
28 28 C 1.38391 * 120.04864 * 359.70075 * 26 24 23
29 29 F 1.35103 * 120.10457 * 180.29785 * 28 26 24
30 30 H 1.09004 * 109.46910 * 300.00360 * 1 2 3
31 31 H 1.08990 * 109.46820 * 180.02562 * 1 2 3
32 32 H 1.08997 * 109.46800 * 60.00372 * 1 2 3
33 33 H 1.08999 * 109.58418 * 294.37478 * 4 2 1
34 34 H 1.09000 * 109.58626 * 54.65582 * 4 2 1
35 35 H 0.96994 * 119.99948 * 179.97438 * 9 8 6
36 36 H 1.09001 * 109.58388 * 173.39819 * 14 5 4
37 37 H 1.08990 * 109.58854 * 293.82625 * 14 5 4
38 38 H 1.09007 * 109.49974 * 65.31520 * 15 14 5
39 39 H 1.09000 * 109.49341 * 185.37540 * 15 14 5
40 40 H 0.96994 * 120.00374 * 335.00805 * 18 16 2
41 41 H 1.08002 * 120.02247 * 0.02562 * 22 21 19
42 42 H 1.07996 * 119.89168 * 180.02562 * 23 22 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8939 1.0275 0.0000
4 6 2.0413 -0.7234 1.2499
5 7 3.5046 -0.8287 1.1699
6 6 4.2937 -0.3777 2.1942
7 1 3.9446 0.4193 2.8341
8 6 5.5420 -0.9450 2.4102
9 7 6.4552 -0.2862 3.0917
10 14 5.9259 -2.6433 1.7338
11 1 6.5608 -2.5120 0.3977
12 1 6.8542 -3.3454 2.6561
13 1 4.6680 -3.4227 1.6096
14 6 4.1053 -1.4268 -0.0302
15 6 3.5709 -0.6954 -1.2657
16 6 2.0408 -0.7228 -1.2485
17 1 1.6582 -0.2240 -2.1390
18 7 1.5784 -2.1128 -1.2312
19 6 1.4502 -2.7947 -2.3867
20 8 1.7188 -2.2565 -3.4433
21 6 0.9839 -4.1948 -2.3693
22 6 0.6749 -4.8163 -1.1565
23 6 0.2394 -6.1231 -1.1449
24 6 0.1058 -6.8249 -2.3339
25 9 -0.3224 -8.1061 -2.3144
26 6 0.4102 -6.2170 -3.5424
27 9 0.2784 -6.9063 -4.6968
28 6 0.8435 -4.9029 -3.5673
29 9 1.1347 -4.3076 -4.7446
30 1 -0.3633 0.5139 0.8900
31 1 -0.3632 -1.0276 0.0005
32 1 -0.3633 0.5138 -0.8900
33 1 1.7638 -0.1572 2.1389
34 1 1.6033 -1.7202 1.3000
35 1 7.3274 -0.6827 3.2430
36 1 5.1896 -1.3246 0.0143
37 1 3.8376 -2.4818 -0.0859
38 1 3.9160 0.3385 -1.2541
39 1 3.9340 -1.1901 -2.1666
40 1 1.3643 -2.5423 -0.3883
41 1 0.7767 -4.2722 -0.2291
42 1 0.0004 -6.6024 -0.2071
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000942585713.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:30:43
Heat of formation + Delta-G solvation = -113.236807 kcal
Electronic energy + Delta-G solvation = -30713.226312 eV
Core-core repulsion = 26051.828249 eV
Total energy + Delta-G solvation = -4661.398063 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 342.130 amu
Computer time = 0.84 seconds
Orbital eigenvalues (eV)
-50.14054 -49.52801 -48.78310 -40.56543 -38.96010 -37.72333 -34.59517 -32.93615
-31.77912 -31.35278 -31.09842 -30.04000 -26.49703 -25.53836 -24.52306 -23.64930
-22.24263 -21.63671 -21.14181 -19.20612 -18.91755 -18.37897 -18.17001 -17.18737
-17.06238 -16.66594 -16.25468 -15.88385 -15.74766 -15.33990 -15.21773 -14.99491
-14.96155 -14.74325 -14.41055 -14.32527 -13.73525 -13.64372 -13.57368 -13.47438
-12.66263 -12.56640 -12.39301 -12.32032 -12.28182 -11.84856 -11.69957 -11.62143
-11.36454 -10.75262 -10.64305 -10.31918 -10.07934 -10.06032 -9.77586 -9.58097
-9.46121 -9.43070 -8.96652 -8.65881 -7.07547 -6.02747 -3.39757 -0.11154
0.24508 2.21197 2.72387 3.03419 3.15224 3.26666 3.39480 3.43018
3.65986 3.74357 3.91911 4.08597 4.25425 4.45012 4.80847 4.83803
4.93860 5.06902 5.14378 5.22004 5.23896 5.26280 5.35060 5.35667
5.59857 5.74106 5.77593 5.86078 5.92358 6.02765 6.05161 6.14558
6.25057 6.33370 6.47391 6.54170 6.57783 6.63448 6.82237 7.41771
7.86744 8.07796 8.24629 8.84576 9.63453 9.99451 11.13057
Molecular weight = 342.13amu
Principal moments of inertia in cm(-1)
A = 0.013550 B = 0.003567 C = 0.003253
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2065.875530 B = 7848.546845 C = 8604.926876
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.143 4.143
2 C -0.120 4.120
3 H 0.089 0.911
4 C 0.155 3.845
5 N -0.604 5.604
6 C -0.263 4.263
7 H 0.086 0.914
8 C 0.026 3.974
9 N -0.906 5.906
10 Si 0.883 3.117
11 H -0.289 1.289
12 H -0.303 1.303
13 H -0.272 1.272
14 C 0.127 3.873
15 C -0.148 4.148
16 C 0.160 3.840
17 H 0.083 0.917
18 N -0.705 5.705
19 C 0.557 3.443
20 O -0.522 6.522
21 C -0.151 4.151
22 C -0.037 4.037
23 C -0.140 4.140
24 C 0.121 3.879
25 F -0.115 7.115
26 C 0.021 3.979
27 F -0.114 7.114
28 C 0.157 3.843
29 F -0.093 7.093
30 H 0.057 0.943
31 H 0.050 0.950
32 H 0.051 0.949
33 H 0.068 0.932
34 H 0.016 0.984
35 H 0.263 0.737
36 H 0.073 0.927
37 H 0.023 0.977
38 H 0.077 0.923
39 H 0.061 0.939
40 H 0.400 0.600
41 H 0.157 0.843
42 H 0.162 0.838
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -15.819 -9.955 -8.672 20.604
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.200 4.200
2 C -0.141 4.141
3 H 0.108 0.892
4 C 0.028 3.972
5 N -0.328 5.328
6 C -0.391 4.391
7 H 0.104 0.896
8 C -0.173 4.173
9 N -0.548 5.548
10 Si 0.713 3.287
11 H -0.217 1.217
12 H -0.231 1.231
13 H -0.197 1.197
14 C 0.002 3.998
15 C -0.188 4.188
16 C 0.056 3.944
17 H 0.101 0.899
18 N -0.357 5.357
19 C 0.342 3.658
20 O -0.399 6.399
21 C -0.156 4.156
22 C -0.055 4.055
23 C -0.159 4.159
24 C 0.101 3.899
25 F -0.093 7.093
26 C 0.000 4.000
27 F -0.092 7.092
28 C 0.136 3.864
29 F -0.071 7.071
30 H 0.076 0.924
31 H 0.069 0.931
32 H 0.070 0.930
33 H 0.087 0.913
34 H 0.034 0.966
35 H 0.073 0.927
36 H 0.091 0.909
37 H 0.041 0.959
38 H 0.095 0.905
39 H 0.079 0.921
40 H 0.237 0.763
41 H 0.174 0.826
42 H 0.180 0.820
Dipole moment (debyes) X Y Z Total
from point charges -15.446 -9.573 -9.406 20.463
hybrid contribution 0.301 -1.575 -0.392 1.651
sum -15.146 -11.149 -9.799 21.206
Atomic orbital electron populations
1.21770 0.95308 1.01383 1.01587 1.21971 0.94955 1.01182 0.95993
0.89231 1.20932 0.84549 0.96372 0.95308 1.44358 1.00557 1.71928
1.15927 1.18900 0.97924 1.14129 1.08187 0.89620 1.25262 0.96379
0.97987 0.97684 1.69832 1.04442 1.37004 1.43561 0.86963 0.77618
0.86974 0.77100 1.21688 1.23149 1.19724 1.21300 0.98204 0.94448
0.85848 1.22412 0.94458 1.02590 0.99321 1.20998 0.94657 0.79854
0.98850 0.89865 1.46042 1.66811 1.14664 1.08198 1.17662 0.78681
0.84668 0.84791 1.90860 1.49657 1.69161 1.30199 1.20169 1.06638
0.96623 0.92144 1.21230 0.93158 0.93788 0.97364 1.21111 1.02594
0.94847 0.97380 1.17578 0.99483 0.80344 0.92527 1.91591 1.86637
1.33966 1.97106 1.17423 1.09723 0.90389 0.82467 1.91584 1.93837
1.78247 1.45565 1.17301 0.97932 0.88717 0.82486 1.91671 1.89601
1.82716 1.43066 0.92370 0.93120 0.92978 0.91332 0.96644 0.92686
0.90918 0.95881 0.90459 0.92080 0.76304 0.82591 0.81994
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.53 9.05 37.16 0.34 -1.19 16
2 C -0.12 -1.65 2.67 -90.50 -0.24 -1.90 16
3 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16
4 C 0.15 2.55 5.50 -3.71 -0.02 2.53 16
5 N -0.60 -12.92 2.77 -172.32 -0.48 -13.40 16
6 C -0.26 -6.89 10.03 -15.06 -0.15 -7.04 16
7 H 0.09 2.40 8.06 -52.48 -0.42 1.98 16
8 C 0.03 0.72 5.23 -17.43 -0.09 0.63 16
9 N -0.91 -26.90 13.97 55.49 0.78 -26.12 16
10 Si 0.88 21.51 24.35 -169.99 -4.14 17.38 16
11 H -0.29 -6.97 6.62 56.52 0.37 -6.60 16
12 H -0.30 -7.59 7.11 56.52 0.40 -7.19 16
13 H -0.27 -6.30 6.64 56.52 0.38 -5.93 16
14 C 0.13 2.60 3.94 -3.71 -0.01 2.58 16
15 C -0.15 -2.55 5.77 -26.61 -0.15 -2.70 16
16 C 0.16 2.32 2.21 -67.89 -0.15 2.17 16
17 H 0.08 1.23 7.58 -51.93 -0.39 0.83 16
18 N -0.70 -9.12 3.55 -54.79 -0.19 -9.31 16
19 C 0.56 7.78 7.73 -12.45 -0.10 7.68 16
20 O -0.52 -9.12 15.00 5.29 0.08 -9.04 16
21 C -0.15 -1.71 5.88 -104.92 -0.62 -2.33 16
22 C -0.04 -0.29 9.53 -39.20 -0.37 -0.67 16
23 C -0.14 -0.98 10.00 -39.58 -0.40 -1.37 16
24 C 0.12 1.10 7.31 -39.25 -0.29 0.81 16
25 F -0.11 -1.08 17.17 2.25 0.04 -1.04 16
26 C 0.02 0.23 7.30 -39.37 -0.29 -0.06 16
27 F -0.11 -1.36 17.09 2.25 0.04 -1.32 16
28 C 0.16 1.92 7.29 -38.92 -0.28 1.64 16
29 F -0.09 -1.36 15.46 2.25 0.03 -1.32 16
30 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16
31 H 0.05 0.49 7.53 -51.93 -0.39 0.10 16
32 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16
33 H 0.07 1.15 7.93 -51.93 -0.41 0.74 16
34 H 0.02 0.23 6.65 -51.93 -0.35 -0.11 16
35 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16
36 H 0.07 1.69 4.49 -51.93 -0.23 1.45 16
37 H 0.02 0.46 6.67 -51.93 -0.35 0.12 16
38 H 0.08 1.36 8.14 -51.92 -0.42 0.94 16
39 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16
40 H 0.40 4.45 4.76 -40.82 -0.19 4.26 16
41 H 0.16 0.93 6.40 -52.49 -0.34 0.60 16
42 H 0.16 0.67 8.06 -52.49 -0.42 0.25 16
LS Contribution 346.32 15.07 5.22 5.22
Total: -1.00 -31.57 346.32 -6.25 -37.82
By element:
Atomic # 1 Polarization: 5.16 SS G_CDS: -4.80 Total: 0.36 kcal
Atomic # 6 Polarization: 3.61 SS G_CDS: -2.83 Total: 0.79 kcal
Atomic # 7 Polarization: -48.94 SS G_CDS: 0.10 Total: -48.84 kcal
Atomic # 8 Polarization: -9.12 SS G_CDS: 0.08 Total: -9.04 kcal
Atomic # 9 Polarization: -3.80 SS G_CDS: 0.11 Total: -3.68 kcal
Atomic # 14 Polarization: 21.51 SS G_CDS: -4.14 Total: 17.38 kcal
Total LS contribution 5.22 Total: 5.22 kcal
Total: -31.57 -6.25 -37.82 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000942585713.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -75.416 kcal
(2) G-P(sol) polarization free energy of solvation -31.570 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.985 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.252 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.821 kcal
(6) G-S(sol) free energy of system = (1) + (5) -113.237 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.85 seconds