Wall clock time and date at job start Sat Apr 11 2020 06:30:42
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53004 * 1
3 3 H 1.09004 * 109.49975 * 2 1
4 4 C 1.53195 * 109.49733 * 120.06101 * 2 1 3
5 5 N 1.46923 * 108.77416 * 174.58745 * 4 2 1
6 6 C 1.36941 * 120.63258 * 126.37168 * 5 4 2
7 7 H 1.08005 * 119.99741 * 332.62609 * 6 5 4
8 8 C 1.38808 * 120.00144 * 152.62695 * 6 5 4
9 9 N 1.31622 * 120.00074 * 159.37218 * 8 6 5
10 10 Si 1.86800 * 120.00103 * 339.36867 * 8 6 5
11 11 H 1.48504 * 109.46685 * 92.92930 * 10 8 6
12 12 H 1.48501 * 109.47365 * 212.93054 * 10 8 6
13 13 H 1.48499 * 109.47156 * 332.93104 * 10 8 6
14 14 C 1.46929 * 118.73867 * 306.38724 * 5 4 2
15 15 C 1.53193 * 108.77142 * 53.61419 * 14 5 4
16 16 C 1.53039 * 109.49660 * 239.93038 * 2 1 3
17 17 H 1.09004 * 109.46000 * 58.66701 * 16 2 1
18 18 N 1.46493 * 109.46106 * 298.70181 * 16 2 1
19 19 C 1.34778 * 119.99649 * 154.99783 * 18 16 2
20 20 O 1.21588 * 120.00523 * 0.02562 * 19 18 16
21 21 C 1.47583 * 119.99763 * 180.02562 * 19 18 16
22 22 C 1.39740 * 120.13424 * 359.97438 * 21 19 18
23 23 C 1.37747 * 119.94574 * 179.97438 * 22 21 19
24 24 C 1.38717 * 120.21270 * 359.97438 * 23 22 21
25 25 F 1.35100 * 119.86474 * 180.02562 * 24 23 22
26 26 C 1.38658 * 120.26988 * 0.04214 * 24 23 22
27 27 F 1.35102 * 119.97680 * 179.97438 * 26 24 23
28 28 C 1.38391 * 120.04864 * 359.70075 * 26 24 23
29 29 F 1.35103 * 120.10457 * 180.29785 * 28 26 24
30 30 H 1.09004 * 109.46910 * 300.00360 * 1 2 3
31 31 H 1.08990 * 109.46820 * 180.02562 * 1 2 3
32 32 H 1.08997 * 109.46800 * 60.00372 * 1 2 3
33 33 H 1.08999 * 109.58418 * 294.37478 * 4 2 1
34 34 H 1.09000 * 109.58626 * 54.65582 * 4 2 1
35 35 H 0.96994 * 119.99948 * 179.97438 * 9 8 6
36 36 H 1.09001 * 109.58388 * 173.39819 * 14 5 4
37 37 H 1.08990 * 109.58854 * 293.82625 * 14 5 4
38 38 H 1.09007 * 109.49974 * 65.31520 * 15 14 5
39 39 H 1.09000 * 109.49341 * 185.37540 * 15 14 5
40 40 H 0.96994 * 120.00374 * 335.00805 * 18 16 2
41 41 H 1.08002 * 120.02247 * 0.02562 * 22 21 19
42 42 H 1.07996 * 119.89168 * 180.02562 * 23 22 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8939 1.0275 0.0000
4 6 2.0413 -0.7234 1.2499
5 7 3.5046 -0.8287 1.1699
6 6 4.2937 -0.3777 2.1942
7 1 3.9446 0.4193 2.8341
8 6 5.5420 -0.9450 2.4102
9 7 6.4552 -0.2862 3.0917
10 14 5.9259 -2.6433 1.7338
11 1 6.5608 -2.5120 0.3977
12 1 6.8542 -3.3454 2.6561
13 1 4.6680 -3.4227 1.6096
14 6 4.1053 -1.4268 -0.0302
15 6 3.5709 -0.6954 -1.2657
16 6 2.0408 -0.7228 -1.2485
17 1 1.6582 -0.2240 -2.1390
18 7 1.5784 -2.1128 -1.2312
19 6 1.4502 -2.7947 -2.3867
20 8 1.7188 -2.2565 -3.4433
21 6 0.9839 -4.1948 -2.3693
22 6 0.6749 -4.8163 -1.1565
23 6 0.2394 -6.1231 -1.1449
24 6 0.1058 -6.8249 -2.3339
25 9 -0.3224 -8.1061 -2.3144
26 6 0.4102 -6.2170 -3.5424
27 9 0.2784 -6.9063 -4.6968
28 6 0.8435 -4.9029 -3.5673
29 9 1.1347 -4.3076 -4.7446
30 1 -0.3633 0.5139 0.8900
31 1 -0.3632 -1.0276 0.0005
32 1 -0.3633 0.5138 -0.8900
33 1 1.7638 -0.1572 2.1389
34 1 1.6033 -1.7202 1.3000
35 1 7.3274 -0.6827 3.2430
36 1 5.1896 -1.3246 0.0143
37 1 3.8376 -2.4818 -0.0859
38 1 3.9160 0.3385 -1.2541
39 1 3.9340 -1.1901 -2.1666
40 1 1.3643 -2.5423 -0.3883
41 1 0.7767 -4.2722 -0.2291
42 1 0.0004 -6.6024 -0.2071
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000942585713.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:30:42
Heat of formation + Delta-G solvation = -132.804658 kcal
Electronic energy + Delta-G solvation = -30714.074838 eV
Core-core repulsion = 26051.828249 eV
Total energy + Delta-G solvation = -4662.246589 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 342.130 amu
Computer time = 0.86 seconds
Orbital eigenvalues (eV)
-50.96288 -50.36534 -49.64621 -41.64056 -39.96161 -38.88279 -36.12811 -34.20396
-33.35793 -32.63862 -31.83512 -31.24041 -27.74709 -27.08838 -25.50506 -24.41531
-23.62591 -23.16948 -22.17609 -20.39492 -19.86362 -19.21454 -19.06793 -18.67848
-18.01401 -17.77403 -17.33052 -17.06044 -16.73072 -16.56448 -16.34151 -16.10025
-15.88528 -15.75903 -15.59353 -15.40150 -15.19736 -15.04228 -14.83177 -14.32029
-14.17836 -13.86989 -13.44384 -13.41436 -13.22350 -13.05243 -13.00285 -12.86143
-12.75985 -12.23422 -12.07200 -11.88587 -11.64669 -11.40771 -11.30051 -11.14130
-10.69760 -10.30943 -10.19349 -10.01876 -8.88864 -8.13571 -5.44958 -0.88353
-0.48427 1.33807 1.38632 1.40963 1.50801 1.82009 2.17489 2.24070
2.44578 2.91063 2.95987 3.06254 3.21452 3.30490 3.38008 3.50954
3.74030 3.94367 4.10181 4.14948 4.24484 4.31535 4.43046 4.54526
4.59969 4.61216 4.64430 4.72332 4.77140 4.89174 4.95113 4.98708
5.05896 5.18077 5.24947 5.31789 5.35627 5.43834 5.57854 5.90119
6.16854 6.40025 6.94603 7.05308 7.65873 8.05372 9.06192
Molecular weight = 342.13amu
Principal moments of inertia in cm(-1)
A = 0.013550 B = 0.003567 C = 0.003253
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2065.875530 B = 7848.546845 C = 8604.926876
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.135 4.135
2 C -0.109 4.109
3 H 0.075 0.925
4 C 0.149 3.851
5 N -0.615 5.615
6 C -0.242 4.242
7 H 0.056 0.944
8 C -0.035 4.035
9 N -0.959 5.959
10 Si 0.941 3.059
11 H -0.291 1.291
12 H -0.316 1.316
13 H -0.243 1.243
14 C 0.128 3.872
15 C -0.142 4.142
16 C 0.168 3.832
17 H 0.084 0.916
18 N -0.695 5.695
19 C 0.558 3.442
20 O -0.563 6.563
21 C -0.161 4.161
22 C -0.020 4.020
23 C -0.115 4.115
24 C 0.127 3.873
25 F -0.116 7.116
26 C 0.009 3.991
27 F -0.126 7.126
28 C 0.135 3.865
29 F -0.117 7.117
30 H 0.067 0.933
31 H 0.068 0.932
32 H 0.057 0.943
33 H 0.063 0.937
34 H 0.051 0.949
35 H 0.259 0.741
36 H 0.040 0.960
37 H 0.039 0.961
38 H 0.066 0.934
39 H 0.058 0.942
40 H 0.412 0.588
41 H 0.187 0.813
42 H 0.204 0.796
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -18.547 -12.061 -8.013 23.530
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.193 4.193
2 C -0.129 4.129
3 H 0.093 0.907
4 C 0.024 3.976
5 N -0.339 5.339
6 C -0.372 4.372
7 H 0.074 0.926
8 C -0.229 4.229
9 N -0.605 5.605
10 Si 0.770 3.230
11 H -0.219 1.219
12 H -0.245 1.245
13 H -0.166 1.166
14 C 0.003 3.997
15 C -0.182 4.182
16 C 0.064 3.936
17 H 0.102 0.898
18 N -0.347 5.347
19 C 0.345 3.655
20 O -0.443 6.443
21 C -0.166 4.166
22 C -0.039 4.039
23 C -0.133 4.133
24 C 0.106 3.894
25 F -0.094 7.094
26 C -0.012 4.012
27 F -0.105 7.105
28 C 0.113 3.887
29 F -0.095 7.095
30 H 0.086 0.914
31 H 0.087 0.913
32 H 0.076 0.924
33 H 0.082 0.918
34 H 0.069 0.931
35 H 0.068 0.932
36 H 0.058 0.942
37 H 0.057 0.943
38 H 0.085 0.915
39 H 0.076 0.924
40 H 0.251 0.749
41 H 0.204 0.796
42 H 0.221 0.779
Dipole moment (debyes) X Y Z Total
from point charges -18.248 -11.708 -8.755 23.382
hybrid contribution 1.074 -0.869 -0.588 1.502
sum -17.174 -12.577 -9.343 23.247
Atomic orbital electron populations
1.21716 0.92246 1.02902 1.02441 1.21820 0.97302 0.99794 0.94008
0.90697 1.21201 0.81470 0.98454 0.96444 1.44439 1.02452 1.71984
1.15071 1.18868 0.97997 1.12436 1.07912 0.92636 1.25869 0.96620
1.01326 0.99104 1.69973 1.05001 1.38692 1.46870 0.86014 0.78197
0.82935 0.75842 1.21894 1.24497 1.16637 1.21260 0.96442 0.95501
0.86517 1.22307 0.96762 1.01465 0.97652 1.20808 0.92437 0.81047
0.99327 0.89774 1.45871 1.66360 1.13931 1.08585 1.18005 0.77760
0.85521 0.84196 1.90847 1.51451 1.70303 1.31716 1.20014 1.08119
0.95293 0.93127 1.21564 0.91323 0.94095 0.96880 1.21523 0.99896
0.93981 0.97874 1.17747 0.98875 0.80294 0.92474 1.91597 1.86573
1.34129 1.97085 1.17583 1.10613 0.90139 0.82886 1.91546 1.94046
1.78403 1.46516 1.17556 0.99538 0.89437 0.82174 1.91602 1.90157
1.83238 1.44520 0.91381 0.91254 0.92380 0.91833 0.93128 0.93188
0.94158 0.94330 0.91528 0.92375 0.74899 0.79582 0.77940
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.33 9.05 71.98 0.65 -1.68 16
2 C -0.11 -2.68 2.67 -10.71 -0.03 -2.71 16
3 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16
4 C 0.15 4.43 5.50 86.36 0.48 4.90 16
5 N -0.62 -25.30 2.77 -699.10 -1.94 -27.23 16
6 C -0.24 -12.73 10.03 84.03 0.84 -11.88 16
7 H 0.06 3.20 8.06 -2.91 -0.02 3.17 16
8 C -0.03 -1.93 5.23 84.86 0.44 -1.49 16
9 N -0.96 -58.77 13.97 21.65 0.30 -58.46 16
10 Si 0.94 44.25 24.35 68.60 1.67 45.92 16
11 H -0.29 -13.64 6.62 99.48 0.66 -12.98 16
12 H -0.32 -15.37 7.11 99.48 0.71 -14.66 16
13 H -0.24 -10.11 6.64 99.48 0.66 -9.45 16
14 C 0.13 4.99 3.94 86.36 0.34 5.33 16
15 C -0.14 -4.74 5.77 30.67 0.18 -4.56 16
16 C 0.17 4.47 2.21 45.02 0.10 4.57 16
17 H 0.08 2.31 7.58 -2.38 -0.02 2.30 16
18 N -0.69 -15.49 3.55 -445.53 -1.58 -17.07 16
19 C 0.56 14.31 7.73 86.71 0.67 14.98 16
20 O -0.56 -19.31 15.00 -3.99 -0.06 -19.37 16
21 C -0.16 -3.20 5.88 -20.05 -0.12 -3.32 16
22 C -0.02 -0.22 9.53 22.52 0.21 0.00 16
23 C -0.11 -0.96 10.00 22.27 0.22 -0.74 16
24 C 0.13 1.86 7.31 22.48 0.16 2.02 16
25 F -0.12 -1.82 17.17 44.97 0.77 -1.04 16
26 C 0.01 0.18 7.30 22.41 0.16 0.35 16
27 F -0.13 -2.98 17.09 44.97 0.77 -2.22 16
28 C 0.13 3.15 7.29 22.70 0.17 3.31 16
29 F -0.12 -3.50 15.46 44.97 0.70 -2.81 16
30 H 0.07 1.08 8.14 -2.38 -0.02 1.06 16
31 H 0.07 0.96 7.53 -2.39 -0.02 0.94 16
32 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16
33 H 0.06 1.98 7.93 -2.39 -0.02 1.96 16
34 H 0.05 1.20 6.65 -2.39 -0.02 1.19 16
35 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16
36 H 0.04 1.85 4.49 -2.39 -0.01 1.83 16
37 H 0.04 1.40 6.67 -2.39 -0.02 1.38 16
38 H 0.07 2.34 8.14 -2.38 -0.02 2.32 16
39 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16
40 H 0.41 6.97 4.76 -92.71 -0.44 6.53 16
41 H 0.19 0.90 6.40 -2.91 -0.02 0.88 16
42 H 0.20 0.18 8.06 -2.91 -0.02 0.15 16
Total: -1.00 -72.78 346.32 5.67 -67.10
By element:
Atomic # 1 Polarization: 5.53 SS G_CDS: 0.55 Total: 6.08 kcal
Atomic # 6 Polarization: 4.60 SS G_CDS: 4.49 Total: 9.08 kcal
Atomic # 7 Polarization: -99.55 SS G_CDS: -3.21 Total: -102.76 kcal
Atomic # 8 Polarization: -19.31 SS G_CDS: -0.06 Total: -19.37 kcal
Atomic # 9 Polarization: -8.30 SS G_CDS: 2.24 Total: -6.06 kcal
Atomic # 14 Polarization: 44.25 SS G_CDS: 1.67 Total: 45.92 kcal
Total: -72.78 5.67 -67.10 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000942585713.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -65.701 kcal
(2) G-P(sol) polarization free energy of solvation -72.775 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.476 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.671 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.104 kcal
(6) G-S(sol) free energy of system = (1) + (5) -132.805 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.86 seconds