Wall clock time and date at job start Sat Apr 11 2020 06:31:38
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53003 * 1
3 3 H 1.09000 * 109.58522 * 2 1
4 4 C 1.53193 * 109.58379 * 239.71725 * 2 1 3
5 5 C 1.53035 * 109.31178 * 185.43463 * 4 2 1
6 6 H 1.09004 * 109.46032 * 301.35734 * 5 4 2
7 7 N 1.46496 * 109.46018 * 181.38846 * 5 4 2
8 8 C 1.34782 * 120.00349 * 154.97270 * 7 5 4
9 9 O 1.21583 * 119.99514 * 359.97438 * 8 7 5
10 10 C 1.47570 * 120.00276 * 179.97438 * 8 7 5
11 11 C 1.39756 * 120.13231 * 0.02562 * 10 8 7
12 12 C 1.37917 * 119.87865 * 180.23081 * 11 10 8
13 13 F 1.35096 * 119.92904 * 179.74235 * 12 11 10
14 14 C 1.38948 * 120.14021 * 359.48958 * 12 11 10
15 15 F 1.35104 * 119.85921 * 180.25638 * 14 12 11
16 16 C 1.38443 * 120.27294 * 0.51174 * 14 12 11
17 17 C 1.38219 * 120.11862 * 359.74512 * 16 14 12
18 18 F 1.35093 * 120.07611 * 180.02562 * 17 16 14
19 19 C 1.53036 * 109.52941 * 61.36911 * 5 4 2
20 20 C 1.53192 * 109.31426 * 298.61842 * 19 5 4
21 21 N 1.46921 * 108.76630 * 54.65337 * 20 19 5
22 22 C 1.36931 * 120.63387 * 126.40573 * 21 20 19
23 23 H 1.07999 * 120.00338 * 221.17643 * 22 21 20
24 24 C 1.38817 * 119.99888 * 41.17647 * 22 21 20
25 25 N 1.31622 * 120.00030 * 214.88989 * 24 22 21
26 26 Si 1.86800 * 119.99858 * 34.89050 * 24 22 21
27 27 H 1.48500 * 109.46967 * 84.62953 * 26 24 22
28 28 H 1.48502 * 109.46817 * 204.62370 * 26 24 22
29 29 H 1.48501 * 109.47182 * 324.62593 * 26 24 22
30 30 H 1.08999 * 109.47172 * 180.28742 * 1 2 3
31 31 H 1.09002 * 109.46822 * 300.27743 * 1 2 3
32 32 H 1.08993 * 109.47284 * 60.28104 * 1 2 3
33 33 H 1.08999 * 109.49427 * 65.48223 * 4 2 1
34 34 H 1.08998 * 109.49942 * 305.38829 * 4 2 1
35 35 H 0.97003 * 119.99971 * 334.97117 * 7 5 4
36 36 H 1.08005 * 120.05778 * 359.94879 * 11 10 8
37 37 H 1.07990 * 119.94474 * 179.76991 * 16 14 12
38 38 H 1.09002 * 109.49535 * 58.58150 * 19 5 4
39 39 H 1.08997 * 109.50019 * 178.67142 * 19 5 4
40 40 H 1.09002 * 109.59629 * 294.85944 * 20 19 5
41 41 H 1.09003 * 109.70020 * 174.50608 * 20 19 5
42 42 H 0.97002 * 119.99827 * 179.97438 * 25 24 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8954 1.0269 0.0000
4 6 2.0435 -0.7278 -1.2464
5 6 3.5677 -0.8434 -1.1730
6 1 4.0044 0.1528 -1.1021
7 7 4.0653 -1.5095 -2.3791
8 6 5.3285 -1.2928 -2.7963
9 8 6.0548 -0.5440 -2.1719
10 6 5.8298 -1.9643 -4.0110
11 6 4.9971 -2.8251 -4.7312
12 6 5.4726 -3.4537 -5.8630
13 9 4.6702 -4.2901 -6.5570
14 6 6.7735 -3.2244 -6.2939
15 9 7.2318 -3.8392 -7.4063
16 6 7.6037 -2.3729 -5.5851
17 6 7.1402 -1.7413 -4.4464
18 9 7.9508 -0.9101 -3.7557
19 6 3.9600 -1.6609 0.0598
20 6 3.4685 -0.9436 1.3209
21 7 2.0254 -0.6991 1.1936
22 6 1.1586 -1.1144 2.1689
23 1 0.2111 -1.5555 1.8971
24 6 1.4979 -0.9684 3.5070
25 7 1.1199 -1.8738 4.3844
26 14 2.4909 0.5131 4.0625
27 1 1.5770 1.6575 4.3083
28 1 3.2165 0.1813 5.3150
29 1 3.4684 0.8783 3.0059
30 1 -0.3633 -1.0276 0.0052
31 1 -0.3633 0.5182 0.8875
32 1 -0.3633 0.5094 -0.8924
33 1 1.7637 -0.1654 -2.1371
34 1 1.6049 -1.7246 -1.2922
35 1 3.4857 -2.1067 -2.8775
36 1 3.9845 -3.0014 -4.3994
37 1 8.6150 -2.2014 -5.9227
38 1 3.5032 -2.6489 0.0015
39 1 5.0445 -1.7629 0.0986
40 1 3.9921 0.0064 1.4287
41 1 3.6579 -1.5663 2.1953
42 1 1.3573 -1.7720 5.3193
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000947667081.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:31:38
Heat of formation + Delta-G solvation = -117.530849 kcal
Electronic energy + Delta-G solvation = -29766.291799 eV
Core-core repulsion = 25104.707532 eV
Total energy + Delta-G solvation = -4661.584267 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 342.130 amu
Computer time = 0.81 seconds
Orbital eigenvalues (eV)
-50.09861 -49.37610 -49.15406 -40.42752 -38.77002 -37.71550 -34.85953 -32.66493
-32.13755 -31.39773 -30.71176 -29.89090 -26.60928 -25.21980 -24.48405 -23.58841
-22.40903 -21.47514 -20.42525 -19.64528 -18.96403 -18.43946 -18.17971 -17.10693
-17.06157 -16.45220 -16.09195 -15.96796 -15.72054 -15.55159 -15.12854 -15.03908
-15.01831 -14.82154 -14.52230 -14.30138 -13.66663 -13.63252 -13.35693 -13.18920
-12.86026 -12.62480 -12.35099 -12.22631 -12.07102 -11.76352 -11.33612 -11.08043
-11.01432 -10.61668 -10.49643 -10.33017 -10.21071 -10.04512 -9.89024 -9.84478
-9.48960 -9.25109 -8.92845 -8.37454 -6.74604 -6.10284 -3.41000 -0.19418
0.17037 2.11584 2.83320 2.97481 3.07453 3.34139 3.41181 3.51709
3.57642 3.71786 3.73243 4.05552 4.38314 4.56963 4.78459 4.87508
4.88769 4.95458 5.10484 5.19718 5.22234 5.28189 5.37295 5.58433
5.76747 5.95113 5.98052 5.99600 6.12067 6.22502 6.26327 6.36795
6.40981 6.51615 6.61424 6.82168 6.86796 6.99065 7.07665 7.36377
8.01040 8.02723 8.40078 8.97982 9.70216 10.18777 11.05039
Molecular weight = 342.13amu
Principal moments of inertia in cm(-1)
A = 0.020141 B = 0.002594 C = 0.002440
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1389.859237 B =10790.581026 C =11470.522461
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.133 4.133
2 C 0.168 3.832
3 H 0.029 0.971
4 C -0.135 4.135
5 C 0.150 3.850
6 H 0.086 0.914
7 N -0.714 5.714
8 C 0.555 3.445
9 O -0.516 6.516
10 C -0.149 4.149
11 C -0.065 4.065
12 C 0.053 3.947
13 F -0.119 7.119
14 C 0.123 3.877
15 F -0.115 7.115
16 C -0.174 4.174
17 C 0.183 3.817
18 F -0.098 7.098
19 C -0.143 4.143
20 C 0.147 3.853
21 N -0.595 5.595
22 C -0.277 4.277
23 H 0.077 0.923
24 C 0.051 3.949
25 N -0.880 5.880
26 Si 0.841 3.159
27 H -0.288 1.288
28 H -0.297 1.297
29 H -0.259 1.259
30 H 0.057 0.943
31 H 0.064 0.936
32 H 0.038 0.962
33 H 0.059 0.941
34 H 0.068 0.932
35 H 0.396 0.604
36 H 0.162 0.838
37 H 0.167 0.833
38 H 0.064 0.936
39 H 0.057 0.943
40 H 0.027 0.973
41 H 0.070 0.930
42 H 0.263 0.737
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 9.190 -2.467 -22.840 24.743
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.190 4.190
2 C 0.061 3.939
3 H 0.046 0.954
4 C -0.175 4.175
5 C 0.047 3.953
6 H 0.104 0.896
7 N -0.364 5.364
8 C 0.340 3.660
9 O -0.392 6.392
10 C -0.154 4.154
11 C -0.084 4.084
12 C 0.033 3.967
13 F -0.098 7.098
14 C 0.102 3.898
15 F -0.093 7.093
16 C -0.194 4.194
17 C 0.162 3.838
18 F -0.076 7.076
19 C -0.183 4.183
20 C 0.020 3.980
21 N -0.319 5.319
22 C -0.405 4.405
23 H 0.094 0.906
24 C -0.152 4.152
25 N -0.518 5.518
26 Si 0.668 3.332
27 H -0.215 1.215
28 H -0.224 1.224
29 H -0.184 1.184
30 H 0.076 0.924
31 H 0.083 0.917
32 H 0.057 0.943
33 H 0.077 0.923
34 H 0.087 0.913
35 H 0.231 0.769
36 H 0.179 0.821
37 H 0.185 0.815
38 H 0.083 0.917
39 H 0.075 0.925
40 H 0.045 0.955
41 H 0.088 0.912
42 H 0.073 0.927
Dipole moment (debyes) X Y Z Total
from point charges 9.681 -2.010 -22.210 24.312
hybrid contribution 0.396 0.322 -0.048 0.512
sum 10.076 -1.689 -22.258 24.491
Atomic orbital electron populations
1.21749 0.95025 1.01917 1.00353 1.20476 0.93746 0.93308 0.86329
0.95367 1.22376 0.93138 1.02117 0.99824 1.21109 0.94652 0.96771
0.82727 0.89635 1.46205 1.12659 1.48411 1.29166 1.17703 0.82748
0.81949 0.83588 1.90889 1.55918 1.36252 1.56133 1.20123 0.93759
1.02329 0.99176 1.21127 1.01076 0.93993 0.92210 1.17388 0.88231
0.96548 0.94543 1.91590 1.71929 1.68461 1.77776 1.17431 0.91282
0.95444 0.85621 1.91597 1.88728 1.80403 1.48565 1.20957 1.02618
0.99830 0.95985 1.17238 0.87250 0.89493 0.89790 1.91674 1.70970
1.67587 1.77329 1.22445 1.00031 0.99948 0.95883 1.21266 0.84720
0.96937 0.95032 1.44413 1.02277 1.65246 1.20009 1.18562 1.02444
1.35191 0.84283 0.90564 1.25591 0.96790 0.96861 0.95938 1.70080
1.47088 1.31288 1.03348 0.87393 0.80767 0.86835 0.78178 1.21489
1.22380 1.18401 0.92431 0.91663 0.94267 0.92271 0.91312 0.76944
0.82078 0.81548 0.91697 0.92456 0.95519 0.91161 0.92684
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -2.30 8.08 37.16 0.30 -2.00 16
2 C 0.17 3.09 3.49 -67.60 -0.24 2.85 16
3 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16
4 C -0.13 -1.97 4.84 -26.61 -0.13 -2.10 16
5 C 0.15 2.27 2.42 -67.90 -0.16 2.10 16
6 H 0.09 1.45 7.58 -51.93 -0.39 1.06 16
7 N -0.71 -8.43 5.03 -54.80 -0.28 -8.70 16
8 C 0.56 7.25 7.73 -12.45 -0.10 7.15 16
9 O -0.52 -8.86 14.99 5.29 0.08 -8.78 16
10 C -0.15 -1.47 5.88 -104.91 -0.62 -2.08 16
11 C -0.06 -0.47 9.51 -39.13 -0.37 -0.84 16
12 C 0.05 0.41 7.29 -39.44 -0.29 0.13 16
13 F -0.12 -1.03 17.17 2.25 0.04 -0.99 16
14 C 0.12 0.94 7.31 -39.24 -0.29 0.65 16
15 F -0.11 -0.94 17.17 2.25 0.04 -0.90 16
16 C -0.17 -1.25 9.99 -39.51 -0.39 -1.64 16
17 C 0.18 1.77 7.28 -38.98 -0.28 1.49 16
18 F -0.10 -1.19 15.54 2.25 0.03 -1.15 16
19 C -0.14 -2.49 5.65 -26.61 -0.15 -2.64 16
20 C 0.15 3.11 4.60 -3.71 -0.02 3.10 16
21 N -0.60 -13.30 2.47 -164.77 -0.41 -13.70 16
22 C -0.28 -7.25 8.44 -15.06 -0.13 -7.38 16
23 H 0.08 2.13 6.82 -52.49 -0.36 1.77 16
24 C 0.05 1.41 4.82 -17.43 -0.08 1.33 16
25 N -0.88 -25.82 13.97 55.49 0.78 -25.04 16
26 Si 0.84 21.11 27.39 -169.99 -4.66 16.45 16
27 H -0.29 -7.34 7.11 56.52 0.40 -6.93 16
28 H -0.30 -7.58 7.11 56.52 0.40 -7.18 16
29 H -0.26 -6.29 5.24 56.52 0.30 -6.00 16
30 H 0.06 1.03 7.39 -51.93 -0.38 0.65 16
31 H 0.06 1.25 7.72 -51.93 -0.40 0.85 16
32 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16
33 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16
34 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16
35 H 0.40 3.38 6.63 -40.82 -0.27 3.11 16
36 H 0.16 0.80 6.40 -52.48 -0.34 0.46 16
37 H 0.17 0.80 8.06 -52.49 -0.42 0.38 16
38 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16
39 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16
40 H 0.03 0.59 6.71 -51.93 -0.35 0.24 16
41 H 0.07 1.63 7.01 -51.93 -0.36 1.26 16
42 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16
LS Contribution 351.98 15.07 5.30 5.30
Total: -1.00 -31.21 351.98 -7.07 -38.28
By element:
Atomic # 1 Polarization: 4.18 SS G_CDS: -5.05 Total: -0.88 kcal
Atomic # 6 Polarization: 3.07 SS G_CDS: -2.95 Total: 0.12 kcal
Atomic # 7 Polarization: -47.54 SS G_CDS: 0.09 Total: -47.45 kcal
Atomic # 8 Polarization: -8.86 SS G_CDS: 0.08 Total: -8.78 kcal
Atomic # 9 Polarization: -3.16 SS G_CDS: 0.11 Total: -3.04 kcal
Atomic # 14 Polarization: 21.11 SS G_CDS: -4.66 Total: 16.45 kcal
Total LS contribution 5.30 Total: 5.30 kcal
Total: -31.21 -7.07 -38.28 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000947667081.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -79.256 kcal
(2) G-P(sol) polarization free energy of solvation -31.208 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.464 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.067 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.275 kcal
(6) G-S(sol) free energy of system = (1) + (5) -117.531 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.81 seconds