Wall clock time and date at job start Sat Apr 11 2020 06:31:37
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53003 * 1
3 3 H 1.09000 * 109.58522 * 2 1
4 4 C 1.53193 * 109.58379 * 239.71725 * 2 1 3
5 5 C 1.53035 * 109.31178 * 185.43463 * 4 2 1
6 6 H 1.09004 * 109.46032 * 301.35734 * 5 4 2
7 7 N 1.46496 * 109.46018 * 181.38846 * 5 4 2
8 8 C 1.34782 * 120.00349 * 154.97270 * 7 5 4
9 9 O 1.21583 * 119.99514 * 359.97438 * 8 7 5
10 10 C 1.47570 * 120.00276 * 179.97438 * 8 7 5
11 11 C 1.39756 * 120.13231 * 0.02562 * 10 8 7
12 12 C 1.37917 * 119.87865 * 180.23081 * 11 10 8
13 13 F 1.35096 * 119.92904 * 179.74235 * 12 11 10
14 14 C 1.38948 * 120.14021 * 359.48958 * 12 11 10
15 15 F 1.35104 * 119.85921 * 180.25638 * 14 12 11
16 16 C 1.38443 * 120.27294 * 0.51174 * 14 12 11
17 17 C 1.38219 * 120.11862 * 359.74512 * 16 14 12
18 18 F 1.35093 * 120.07611 * 180.02562 * 17 16 14
19 19 C 1.53036 * 109.52941 * 61.36911 * 5 4 2
20 20 C 1.53192 * 109.31426 * 298.61842 * 19 5 4
21 21 N 1.46921 * 108.76630 * 54.65337 * 20 19 5
22 22 C 1.36931 * 120.63387 * 126.40573 * 21 20 19
23 23 H 1.07999 * 120.00338 * 221.17643 * 22 21 20
24 24 C 1.38817 * 119.99888 * 41.17647 * 22 21 20
25 25 N 1.31622 * 120.00030 * 214.88989 * 24 22 21
26 26 Si 1.86800 * 119.99858 * 34.89050 * 24 22 21
27 27 H 1.48500 * 109.46967 * 84.62953 * 26 24 22
28 28 H 1.48502 * 109.46817 * 204.62370 * 26 24 22
29 29 H 1.48501 * 109.47182 * 324.62593 * 26 24 22
30 30 H 1.08999 * 109.47172 * 180.28742 * 1 2 3
31 31 H 1.09002 * 109.46822 * 300.27743 * 1 2 3
32 32 H 1.08993 * 109.47284 * 60.28104 * 1 2 3
33 33 H 1.08999 * 109.49427 * 65.48223 * 4 2 1
34 34 H 1.08998 * 109.49942 * 305.38829 * 4 2 1
35 35 H 0.97003 * 119.99971 * 334.97117 * 7 5 4
36 36 H 1.08005 * 120.05778 * 359.94879 * 11 10 8
37 37 H 1.07990 * 119.94474 * 179.76991 * 16 14 12
38 38 H 1.09002 * 109.49535 * 58.58150 * 19 5 4
39 39 H 1.08997 * 109.50019 * 178.67142 * 19 5 4
40 40 H 1.09002 * 109.59629 * 294.85944 * 20 19 5
41 41 H 1.09003 * 109.70020 * 174.50608 * 20 19 5
42 42 H 0.97002 * 119.99827 * 179.97438 * 25 24 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8954 1.0269 0.0000
4 6 2.0435 -0.7278 -1.2464
5 6 3.5677 -0.8434 -1.1730
6 1 4.0044 0.1528 -1.1021
7 7 4.0653 -1.5095 -2.3791
8 6 5.3285 -1.2928 -2.7963
9 8 6.0548 -0.5440 -2.1719
10 6 5.8298 -1.9643 -4.0110
11 6 4.9971 -2.8251 -4.7312
12 6 5.4726 -3.4537 -5.8630
13 9 4.6702 -4.2901 -6.5570
14 6 6.7735 -3.2244 -6.2939
15 9 7.2318 -3.8392 -7.4063
16 6 7.6037 -2.3729 -5.5851
17 6 7.1402 -1.7413 -4.4464
18 9 7.9508 -0.9101 -3.7557
19 6 3.9600 -1.6609 0.0598
20 6 3.4685 -0.9436 1.3209
21 7 2.0254 -0.6991 1.1936
22 6 1.1586 -1.1144 2.1689
23 1 0.2111 -1.5555 1.8971
24 6 1.4979 -0.9684 3.5070
25 7 1.1199 -1.8738 4.3844
26 14 2.4909 0.5131 4.0625
27 1 1.5770 1.6575 4.3083
28 1 3.2165 0.1813 5.3150
29 1 3.4684 0.8783 3.0059
30 1 -0.3633 -1.0276 0.0052
31 1 -0.3633 0.5182 0.8875
32 1 -0.3633 0.5094 -0.8924
33 1 1.7637 -0.1654 -2.1371
34 1 1.6049 -1.7246 -1.2922
35 1 3.4857 -2.1067 -2.8775
36 1 3.9845 -3.0014 -4.3994
37 1 8.6150 -2.2014 -5.9227
38 1 3.5032 -2.6489 0.0015
39 1 5.0445 -1.7629 0.0986
40 1 3.9921 0.0064 1.4287
41 1 3.6579 -1.5663 2.1953
42 1 1.3573 -1.7720 5.3193
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000947667081.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:31:37
Heat of formation + Delta-G solvation = -136.449698 kcal
Electronic energy + Delta-G solvation = -29767.112181 eV
Core-core repulsion = 25104.707532 eV
Total energy + Delta-G solvation = -4662.404650 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 342.130 amu
Computer time = 0.96 seconds
Orbital eigenvalues (eV)
-50.72749 -50.17597 -49.78582 -41.41806 -39.79920 -38.93928 -36.21001 -34.32804
-33.39003 -32.74154 -31.54142 -31.11996 -28.05909 -26.62474 -25.50215 -24.48586
-23.89475 -22.61450 -21.63154 -21.12544 -19.76221 -19.20913 -18.95720 -18.35634
-17.81836 -17.70863 -17.22574 -16.90491 -16.76046 -16.42166 -16.27204 -16.19372
-15.91985 -15.77329 -15.71383 -15.26984 -15.12704 -14.87268 -14.70539 -14.46685
-14.39280 -13.95045 -13.56156 -13.32655 -12.98647 -12.93394 -12.77646 -12.66664
-12.54333 -12.44614 -12.06742 -11.91046 -11.64970 -11.58665 -11.40606 -11.06666
-10.51903 -10.46903 -10.15885 -9.87074 -8.62546 -8.24131 -5.49015 -0.88633
-0.43225 1.35127 1.36802 1.44728 1.52535 1.88361 2.21922 2.32964
2.48639 2.68850 2.96190 3.07035 3.12125 3.32410 3.43824 3.74029
3.83387 4.00131 4.15642 4.24038 4.25792 4.32717 4.38344 4.55013
4.56651 4.62560 4.65119 4.70918 4.77741 4.94778 5.04107 5.08706
5.11652 5.14116 5.28256 5.31945 5.44136 5.53660 5.63578 5.96746
6.30788 6.41203 7.04451 7.07307 7.69140 8.19980 8.95635
Molecular weight = 342.13amu
Principal moments of inertia in cm(-1)
A = 0.020141 B = 0.002594 C = 0.002440
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1389.859237 B =10790.581026 C =11470.522461
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.127 4.127
2 C 0.157 3.843
3 H 0.030 0.970
4 C -0.121 4.121
5 C 0.160 3.840
6 H 0.069 0.931
7 N -0.699 5.699
8 C 0.556 3.444
9 O -0.562 6.562
10 C -0.159 4.159
11 C -0.046 4.046
12 C 0.054 3.946
13 F -0.122 7.122
14 C 0.128 3.872
15 F -0.116 7.116
16 C -0.158 4.158
17 C 0.168 3.832
18 F -0.117 7.117
19 C -0.131 4.131
20 C 0.145 3.855
21 N -0.607 5.607
22 C -0.252 4.252
23 H 0.055 0.945
24 C 0.001 3.999
25 N -0.926 5.926
26 Si 0.892 3.108
27 H -0.292 1.292
28 H -0.304 1.304
29 H -0.249 1.249
30 H 0.047 0.953
31 H 0.038 0.962
32 H 0.080 0.920
33 H 0.096 0.904
34 H 0.075 0.925
35 H 0.415 0.585
36 H 0.189 0.811
37 H 0.190 0.810
38 H 0.066 0.934
39 H 0.055 0.945
40 H 0.020 0.980
41 H 0.042 0.958
42 H 0.261 0.739
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 9.378 -2.549 -26.230 27.972
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.184 4.184
2 C 0.052 3.948
3 H 0.047 0.953
4 C -0.160 4.160
5 C 0.056 3.944
6 H 0.088 0.912
7 N -0.351 5.351
8 C 0.343 3.657
9 O -0.442 6.442
10 C -0.163 4.163
11 C -0.065 4.065
12 C 0.034 3.966
13 F -0.100 7.100
14 C 0.107 3.893
15 F -0.094 7.094
16 C -0.177 4.177
17 C 0.147 3.853
18 F -0.095 7.095
19 C -0.171 4.171
20 C 0.019 3.981
21 N -0.332 5.332
22 C -0.382 4.382
23 H 0.072 0.928
24 C -0.198 4.198
25 N -0.568 5.568
26 Si 0.719 3.281
27 H -0.219 1.219
28 H -0.232 1.232
29 H -0.174 1.174
30 H 0.066 0.934
31 H 0.057 0.943
32 H 0.098 0.902
33 H 0.114 0.886
34 H 0.094 0.906
35 H 0.254 0.746
36 H 0.206 0.794
37 H 0.207 0.793
38 H 0.085 0.915
39 H 0.074 0.926
40 H 0.038 0.962
41 H 0.061 0.939
42 H 0.070 0.930
Dipole moment (debyes) X Y Z Total
from point charges 9.862 -2.095 -25.668 27.577
hybrid contribution 0.334 0.300 0.864 0.974
sum 10.196 -1.795 -24.804 26.878
Atomic orbital electron populations
1.21686 0.94169 1.01446 1.01100 1.20765 0.94585 0.93468 0.86031
0.95261 1.22200 0.92225 1.02551 0.99005 1.20766 0.95076 0.95706
0.82898 0.91239 1.45883 1.12751 1.48315 1.28104 1.18090 0.82396
0.81199 0.83985 1.90874 1.57116 1.38399 1.57803 1.19833 0.94294
1.03583 0.98607 1.21233 1.01679 0.92341 0.91242 1.17421 0.88187
0.96445 0.94579 1.91592 1.72030 1.68567 1.77846 1.17498 0.91302
0.95117 0.85378 1.91602 1.88768 1.80399 1.48674 1.21040 1.03489
0.98553 0.94627 1.17481 0.87245 0.89954 0.90579 1.91627 1.71542
1.68407 1.77965 1.22245 0.99717 0.99806 0.95313 1.21171 0.84316
0.96490 0.96091 1.44568 1.02168 1.65994 1.20453 1.18518 1.01747
1.32955 0.84943 0.92772 1.26041 0.98730 0.98629 0.96417 1.70156
1.50171 1.32981 1.03523 0.86578 0.79674 0.84131 0.77674 1.21925
1.23169 1.17367 0.93433 0.94328 0.90174 0.88581 0.90590 0.74623
0.79435 0.79270 0.91545 0.92646 0.96250 0.93891 0.92977
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -4.12 8.08 71.98 0.58 -3.54 16
2 C 0.16 5.45 3.49 44.98 0.16 5.60 16
3 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16
4 C -0.12 -3.08 4.84 30.67 0.15 -2.94 16
5 C 0.16 4.44 2.42 45.02 0.11 4.55 16
6 H 0.07 2.23 7.58 -2.39 -0.02 2.21 16
7 N -0.70 -14.39 5.03 -445.56 -2.24 -16.63 16
8 C 0.56 13.46 7.73 86.70 0.67 14.13 16
9 O -0.56 -18.99 14.99 -3.98 -0.06 -19.05 16
10 C -0.16 -2.75 5.88 -20.05 -0.12 -2.86 16
11 C -0.05 -0.51 9.51 22.56 0.21 -0.29 16
12 C 0.05 0.66 7.29 22.36 0.16 0.83 16
13 F -0.12 -1.71 17.17 44.97 0.77 -0.94 16
14 C 0.13 1.58 7.31 22.49 0.16 1.74 16
15 F -0.12 -1.59 17.17 44.97 0.77 -0.82 16
16 C -0.16 -1.85 9.99 22.31 0.22 -1.63 16
17 C 0.17 2.97 7.28 22.66 0.16 3.13 16
18 F -0.12 -2.79 15.54 44.97 0.70 -2.09 16
19 C -0.13 -4.41 5.65 30.67 0.17 -4.24 16
20 C 0.15 6.17 4.60 86.36 0.40 6.56 16
21 N -0.61 -26.85 2.47 -675.23 -1.67 -28.51 16
22 C -0.25 -13.39 8.44 84.04 0.71 -12.68 16
23 H 0.05 3.10 6.82 -2.91 -0.02 3.08 16
24 C 0.00 0.04 4.82 84.86 0.41 0.44 16
25 N -0.93 -56.12 13.97 21.65 0.30 -55.82 16
26 Si 0.89 44.72 27.39 68.60 1.88 46.60 16
27 H -0.29 -14.68 7.11 99.48 0.71 -13.97 16
28 H -0.30 -15.53 7.11 99.48 0.71 -14.82 16
29 H -0.25 -11.93 5.24 99.48 0.52 -11.41 16
30 H 0.05 1.63 7.39 -2.39 -0.02 1.61 16
31 H 0.04 1.44 7.72 -2.39 -0.02 1.42 16
32 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16
33 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16
34 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16
35 H 0.42 5.31 6.63 -92.71 -0.61 4.69 16
36 H 0.19 0.97 6.40 -2.91 -0.02 0.95 16
37 H 0.19 1.28 8.06 -2.92 -0.02 1.26 16
38 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16
39 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16
40 H 0.02 0.86 6.71 -2.39 -0.02 0.84 16
41 H 0.04 2.03 7.01 -2.39 -0.02 2.01 16
42 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16
Total: -1.00 -70.34 351.98 4.91 -65.43
By element:
Atomic # 1 Polarization: 2.73 SS G_CDS: 0.28 Total: 3.02 kcal
Atomic # 6 Polarization: 4.65 SS G_CDS: 4.17 Total: 8.81 kcal
Atomic # 7 Polarization: -97.36 SS G_CDS: -3.60 Total: -100.96 kcal
Atomic # 8 Polarization: -18.99 SS G_CDS: -0.06 Total: -19.05 kcal
Atomic # 9 Polarization: -6.09 SS G_CDS: 2.24 Total: -3.84 kcal
Atomic # 14 Polarization: 44.72 SS G_CDS: 1.88 Total: 46.60 kcal
Total: -70.34 4.91 -65.43 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000947667081.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -71.020 kcal
(2) G-P(sol) polarization free energy of solvation -70.340 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.361 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.911 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.429 kcal
(6) G-S(sol) free energy of system = (1) + (5) -136.450 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.96 seconds