Wall clock time and date at job start Sat Apr 11 2020 06:31:35
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 H 1.09002 * 110.63702 * 2 1
4 4 C 1.54327 * 110.71951 * 236.66422 * 2 1 3
5 5 N 1.47020 * 107.26640 * 219.44081 * 4 2 1
6 6 C 1.34780 * 125.64322 * 178.98415 * 5 4 2
7 7 O 1.21564 * 120.00323 * 354.22027 * 6 5 4
8 8 C 1.47723 * 119.99829 * 174.21355 * 6 5 4
9 9 C 1.39675 * 120.11750 * 155.52340 * 8 6 5
10 10 C 1.37816 * 119.87985 * 180.02562 * 9 8 6
11 11 C 1.38671 * 120.11870 * 0.02562 * 10 9 8
12 12 F 1.35104 * 119.88130 * 179.97438 * 11 10 9
13 13 C 1.38630 * 120.24144 * 359.97438 * 11 10 9
14 14 C 1.50698 * 119.94283 * 179.97438 * 13 11 10
15 15 F 1.39901 * 109.47244 * 30.00130 * 14 13 11
16 16 F 1.39901 * 109.47366 * 150.00177 * 14 13 11
17 17 C 1.37856 * 120.11873 * 359.67951 * 13 11 10
18 18 C 1.47420 * 108.71018 * 358.94239 * 5 4 2
19 19 C 1.54911 * 104.82871 * 24.12559 * 18 5 4
20 20 H 1.09003 * 111.03607 * 204.90480 * 19 18 5
21 21 N 1.46493 * 111.00306 * 81.06817 * 19 18 5
22 22 C 1.36944 * 120.00220 * 92.80640 * 21 19 18
23 23 H 1.07995 * 119.99293 * 359.97438 * 22 21 19
24 24 C 1.38808 * 120.00264 * 180.02562 * 22 21 19
25 25 N 1.31620 * 120.00036 * 359.97438 * 24 22 21
26 26 Si 1.86796 * 120.00154 * 180.26864 * 24 22 21
27 27 H 1.48497 * 109.47299 * 269.72568 * 26 24 22
28 28 H 1.48505 * 109.46895 * 29.72684 * 26 24 22
29 29 H 1.48500 * 109.47168 * 149.72205 * 26 24 22
30 30 H 1.09003 * 109.47332 * 296.85882 * 1 2 3
31 31 H 1.09000 * 109.47340 * 56.85830 * 1 2 3
32 32 H 1.09000 * 109.46949 * 176.86101 * 1 2 3
33 33 H 1.08991 * 109.88116 * 338.85874 * 4 2 1
34 34 H 1.09004 * 109.88029 * 100.02433 * 4 2 1
35 35 H 1.08002 * 120.05881 * 359.97438 * 9 8 6
36 36 H 1.08001 * 119.93658 * 179.97438 * 10 9 8
37 37 H 1.09007 * 109.47389 * 270.00160 * 14 13 11
38 38 H 1.08001 * 120.06814 * 180.32172 * 17 13 11
39 39 H 1.08998 * 110.36428 * 265.29275 * 18 5 4
40 40 H 1.08989 * 110.36986 * 142.96324 * 18 5 4
41 41 H 0.97002 * 120.00505 * 272.79841 * 21 19 18
42 42 H 0.96993 * 120.00478 * 180.02562 * 25 24 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.9142 1.0201 0.0000
4 6 2.0760 -0.7932 -1.2060
5 7 3.2445 -1.5519 -0.7363
6 6 3.9924 -2.3859 -1.4857
7 8 3.6589 -2.6426 -2.6262
8 6 5.2175 -2.9881 -0.9212
9 6 5.7091 -4.1898 -1.4361
10 6 6.8522 -4.7475 -0.9054
11 6 7.5138 -4.1181 0.1382
12 9 8.6337 -4.6694 0.6552
13 6 7.0302 -2.9252 0.6530
14 6 7.7541 -2.2472 1.7876
15 9 9.1200 -2.5400 1.7105
16 9 7.5681 -0.8635 1.6989
17 6 5.8916 -2.3549 0.1249
18 6 3.4633 -1.2486 0.6896
19 6 2.0790 -0.7934 1.2151
20 1 2.1844 -0.1484 2.0875
21 7 1.2272 -1.9461 1.5178
22 6 1.2022 -2.4652 2.7848
23 1 1.8107 -2.0248 3.5607
24 6 0.3955 -3.5579 3.0714
25 7 -0.3457 -4.0948 2.1256
26 14 0.3557 -4.2611 4.8015
27 1 1.3936 -5.3152 4.9314
28 1 0.6239 -3.1787 5.7821
29 1 -0.9822 -4.8485 5.0663
30 1 -0.3634 0.4643 0.9168
31 1 -0.3634 0.5618 -0.8605
32 1 -0.3633 -1.0261 -0.0563
33 1 1.3130 -1.4785 -1.5750
34 1 2.3740 -0.1057 -1.9976
35 1 5.1940 -4.6815 -2.2481
36 1 7.2329 -5.6769 -1.3025
37 1 7.3585 -2.6068 2.7376
38 1 5.5186 -1.4229 0.5232
39 1 4.1931 -0.4464 0.7991
40 1 3.7960 -2.1404 1.2205
41 1 0.6808 -2.3418 0.8208
42 1 -0.9097 -4.8581 2.3259
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001054670624.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:31:35
Heat of formation + Delta-G solvation = -129.293423 kcal
Electronic energy + Delta-G solvation = -30637.843432 eV
Core-core repulsion = 25975.749101 eV
Total energy + Delta-G solvation = -4662.094330 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 342.130 amu
Computer time = 0.78 seconds
Orbital eigenvalues (eV)
-49.48283 -48.96510 -47.18478 -40.44936 -38.73912 -37.46092 -34.04451 -32.75843
-32.40868 -31.01636 -30.43823 -27.97027 -26.52451 -26.21565 -24.29511 -23.57992
-22.52117 -21.79894 -19.74781 -19.35200 -18.01156 -17.82628 -17.71833 -17.52463
-17.16475 -16.38321 -16.07897 -16.03280 -15.77771 -15.23055 -14.75038 -14.50777
-14.17589 -14.04447 -13.87462 -13.56667 -13.43978 -13.33456 -13.25320 -13.05810
-12.89438 -12.75766 -12.39904 -12.25953 -12.03745 -11.79924 -11.61453 -11.19137
-11.11328 -10.98502 -10.76346 -10.54412 -10.33671 -10.04646 -9.84450 -9.72568
-9.47099 -9.11294 -9.01175 -8.35991 -7.11426 -5.89948 -3.20438 0.46545
0.79118 2.65000 3.11594 3.32430 3.34310 3.39890 3.42141 3.57122
3.77180 3.92247 4.16363 4.44943 4.49317 4.62103 4.66233 4.84239
4.97826 4.99066 5.07640 5.25248 5.31504 5.42155 5.53645 5.57787
5.64422 5.69738 5.79643 5.84049 5.87245 5.98925 6.06845 6.13792
6.27203 6.29153 6.38591 6.42282 6.52555 6.66611 6.87233 7.56836
7.72675 8.27315 8.29146 9.39488 9.93959 10.28491 11.31808
Molecular weight = 342.13amu
Principal moments of inertia in cm(-1)
A = 0.009342 B = 0.004161 C = 0.003565
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2996.547453 B = 6727.792330 C = 7852.866031
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.131 4.131
2 C -0.116 4.116
3 H 0.081 0.919
4 C 0.117 3.883
5 N -0.595 5.595
6 C 0.574 3.426
7 O -0.545 6.545
8 C -0.130 4.130
9 C -0.015 4.015
10 C -0.163 4.163
11 C 0.151 3.849
12 F -0.124 7.124
13 C -0.216 4.216
14 C 0.318 3.682
15 F -0.195 7.195
16 F -0.195 7.195
17 C -0.034 4.034
18 C 0.058 3.942
19 C 0.172 3.828
20 H 0.077 0.923
21 N -0.707 5.707
22 C -0.250 4.250
23 H 0.072 0.928
24 C -0.006 4.006
25 N -0.927 5.927
26 Si 0.906 3.094
27 H -0.290 1.290
28 H -0.281 1.281
29 H -0.291 1.291
30 H 0.060 0.940
31 H 0.044 0.956
32 H 0.069 0.931
33 H 0.071 0.929
34 H 0.061 0.939
35 H 0.150 0.850
36 H 0.149 0.851
37 H 0.130 0.870
38 H 0.159 0.841
39 H 0.061 0.939
40 H 0.084 0.916
41 H 0.388 0.612
42 H 0.257 0.743
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 13.520 5.156 -3.878 14.980
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.188 4.188
2 C -0.136 4.136
3 H 0.099 0.901
4 C -0.006 4.006
5 N -0.326 5.326
6 C 0.362 3.638
7 O -0.424 6.424
8 C -0.133 4.133
9 C -0.034 4.034
10 C -0.181 4.181
11 C 0.131 3.869
12 F -0.102 7.102
13 C -0.217 4.217
14 C 0.265 3.735
15 F -0.176 7.176
16 F -0.176 7.176
17 C -0.052 4.052
18 C -0.068 4.068
19 C 0.058 3.942
20 H 0.095 0.905
21 N -0.347 5.347
22 C -0.380 4.380
23 H 0.090 0.910
24 C -0.203 4.203
25 N -0.574 5.574
26 Si 0.736 3.264
27 H -0.217 1.217
28 H -0.206 1.206
29 H -0.217 1.217
30 H 0.079 0.921
31 H 0.063 0.937
32 H 0.088 0.912
33 H 0.089 0.911
34 H 0.080 0.920
35 H 0.167 0.833
36 H 0.167 0.833
37 H 0.147 0.853
38 H 0.176 0.824
39 H 0.079 0.921
40 H 0.103 0.897
41 H 0.223 0.777
42 H 0.067 0.933
Dipole moment (debyes) X Y Z Total
from point charges 13.413 4.927 -4.306 14.924
hybrid contribution 0.158 -0.748 0.841 1.136
sum 13.571 4.179 -3.465 14.617
Atomic orbital electron populations
1.21590 0.93294 1.03054 1.00890 1.22560 0.97299 0.98549 0.95160
0.90110 1.22012 0.87600 0.94279 0.96676 1.48192 1.29302 1.43332
1.11783 1.17628 0.82655 0.78479 0.85003 1.90766 1.71949 1.61313
1.18374 1.19946 0.97344 0.97449 0.98589 1.21255 0.92866 0.92538
0.96760 1.21100 0.97235 1.02275 0.97537 1.17549 0.83761 0.91714
0.93836 1.91568 1.48585 1.84676 1.85405 1.20403 1.00654 0.97874
1.02814 1.20202 0.77633 0.76740 0.98948 1.93036 1.33851 1.93002
1.97677 1.93011 1.94952 1.31992 1.97610 1.21577 0.91515 0.99694
0.92393 1.23789 1.01756 1.00590 0.80646 1.21386 0.88236 0.90041
0.94493 0.90502 1.42366 1.49410 1.32634 1.10286 1.19217 1.21504
1.10015 0.87301 0.90971 1.24751 0.99300 0.98679 0.97584 1.69655
1.30461 1.25468 1.31791 0.86227 0.77020 0.79014 0.84104 1.21711
1.20632 1.21717 0.92091 0.93736 0.91216 0.91092 0.92041 0.83260
0.83341 0.85327 0.82370 0.92101 0.89728 0.77709 0.93316
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -1.95 8.71 37.16 0.32 -1.63 16
2 C -0.12 -1.65 3.42 -88.79 -0.30 -1.96 16
3 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16
4 C 0.12 1.80 6.46 -3.06 -0.02 1.78 16
5 N -0.59 -9.67 3.33 -171.68 -0.57 -10.25 16
6 C 0.57 9.86 7.64 -12.38 -0.09 9.77 16
7 O -0.54 -10.78 16.93 5.31 0.09 -10.69 16
8 C -0.13 -1.89 5.67 -104.96 -0.59 -2.49 16
9 C -0.02 -0.20 9.59 -39.20 -0.38 -0.57 16
10 C -0.16 -1.80 10.01 -39.58 -0.40 -2.20 16
11 C 0.15 1.82 7.15 -39.28 -0.28 1.54 16
12 F -0.12 -1.51 15.41 2.25 0.03 -1.48 16
13 C -0.22 -2.60 5.74 -104.62 -0.60 -3.20 16
14 C 0.32 3.41 5.59 36.00 0.20 3.61 16
15 F -0.19 -2.36 15.48 2.25 0.03 -2.32 16
16 F -0.19 -2.24 16.47 2.25 0.04 -2.20 16
17 C -0.03 -0.43 7.42 -39.20 -0.29 -0.72 16
18 C 0.06 0.88 4.69 -2.53 -0.01 0.87 16
19 C 0.17 2.90 3.47 -65.79 -0.23 2.67 16
20 H 0.08 1.25 8.09 -51.93 -0.42 0.83 16
21 N -0.71 -15.68 4.59 -51.35 -0.24 -15.92 16
22 C -0.25 -6.25 9.96 -15.06 -0.15 -6.40 16
23 H 0.07 1.73 7.83 -52.49 -0.41 1.32 16
24 C -0.01 -0.17 5.50 -17.43 -0.10 -0.26 16
25 N -0.93 -26.54 13.06 55.49 0.72 -25.81 16
26 Si 0.91 21.15 29.55 -169.99 -5.02 16.12 16
27 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16
28 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16
29 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16
30 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16
31 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16
32 H 0.07 1.25 6.48 -51.93 -0.34 0.91 16
33 H 0.07 1.22 7.76 -51.93 -0.40 0.82 16
34 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16
35 H 0.15 1.80 7.84 -52.49 -0.41 1.39 16
36 H 0.15 1.25 8.06 -52.49 -0.42 0.82 16
37 H 0.13 1.03 8.14 -51.93 -0.42 0.61 16
38 H 0.16 1.90 4.14 -52.49 -0.22 1.69 16
39 H 0.06 0.75 6.82 -51.93 -0.35 0.39 16
40 H 0.08 1.41 6.84 -51.94 -0.36 1.06 16
41 H 0.39 9.48 6.38 -40.82 -0.26 9.22 16
42 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16
LS Contribution 356.41 15.07 5.37 5.37
Total: -1.00 -30.42 356.41 -7.30 -37.72
By element:
Atomic # 1 Polarization: 13.49 SS G_CDS: -4.84 Total: 8.65 kcal
Atomic # 6 Polarization: 3.72 SS G_CDS: -2.92 Total: 0.81 kcal
Atomic # 7 Polarization: -51.90 SS G_CDS: -0.08 Total: -51.98 kcal
Atomic # 8 Polarization: -10.78 SS G_CDS: 0.09 Total: -10.69 kcal
Atomic # 9 Polarization: -6.11 SS G_CDS: 0.11 Total: -6.01 kcal
Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.12 kcal
Total LS contribution 5.37 Total: 5.37 kcal
Total: -30.42 -7.30 -37.72 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001054670624.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -91.573 kcal
(2) G-P(sol) polarization free energy of solvation -30.424 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.997 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.296 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.721 kcal
(6) G-S(sol) free energy of system = (1) + (5) -129.293 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.79 seconds