Wall clock time and date at job start Sat Apr 11 2020 06:31:34
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 H 1.09002 * 110.63702 * 2 1
4 4 C 1.54327 * 110.71951 * 236.66422 * 2 1 3
5 5 N 1.47020 * 107.26640 * 219.44081 * 4 2 1
6 6 C 1.34780 * 125.64322 * 178.98415 * 5 4 2
7 7 O 1.21564 * 120.00323 * 354.22027 * 6 5 4
8 8 C 1.47723 * 119.99829 * 174.21355 * 6 5 4
9 9 C 1.39675 * 120.11750 * 155.52340 * 8 6 5
10 10 C 1.37816 * 119.87985 * 180.02562 * 9 8 6
11 11 C 1.38671 * 120.11870 * 0.02562 * 10 9 8
12 12 F 1.35104 * 119.88130 * 179.97438 * 11 10 9
13 13 C 1.38630 * 120.24144 * 359.97438 * 11 10 9
14 14 C 1.50698 * 119.94283 * 179.97438 * 13 11 10
15 15 F 1.39901 * 109.47244 * 30.00130 * 14 13 11
16 16 F 1.39901 * 109.47366 * 150.00177 * 14 13 11
17 17 C 1.37856 * 120.11873 * 359.67951 * 13 11 10
18 18 C 1.47420 * 108.71018 * 358.94239 * 5 4 2
19 19 C 1.54911 * 104.82871 * 24.12559 * 18 5 4
20 20 H 1.09003 * 111.03607 * 204.90480 * 19 18 5
21 21 N 1.46493 * 111.00306 * 81.06817 * 19 18 5
22 22 C 1.36944 * 120.00220 * 92.80640 * 21 19 18
23 23 H 1.07995 * 119.99293 * 359.97438 * 22 21 19
24 24 C 1.38808 * 120.00264 * 180.02562 * 22 21 19
25 25 N 1.31620 * 120.00036 * 359.97438 * 24 22 21
26 26 Si 1.86796 * 120.00154 * 180.26864 * 24 22 21
27 27 H 1.48497 * 109.47299 * 269.72568 * 26 24 22
28 28 H 1.48505 * 109.46895 * 29.72684 * 26 24 22
29 29 H 1.48500 * 109.47168 * 149.72205 * 26 24 22
30 30 H 1.09003 * 109.47332 * 296.85882 * 1 2 3
31 31 H 1.09000 * 109.47340 * 56.85830 * 1 2 3
32 32 H 1.09000 * 109.46949 * 176.86101 * 1 2 3
33 33 H 1.08991 * 109.88116 * 338.85874 * 4 2 1
34 34 H 1.09004 * 109.88029 * 100.02433 * 4 2 1
35 35 H 1.08002 * 120.05881 * 359.97438 * 9 8 6
36 36 H 1.08001 * 119.93658 * 179.97438 * 10 9 8
37 37 H 1.09007 * 109.47389 * 270.00160 * 14 13 11
38 38 H 1.08001 * 120.06814 * 180.32172 * 17 13 11
39 39 H 1.08998 * 110.36428 * 265.29275 * 18 5 4
40 40 H 1.08989 * 110.36986 * 142.96324 * 18 5 4
41 41 H 0.97002 * 120.00505 * 272.79841 * 21 19 18
42 42 H 0.96993 * 120.00478 * 180.02562 * 25 24 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.9142 1.0201 0.0000
4 6 2.0760 -0.7932 -1.2060
5 7 3.2445 -1.5519 -0.7363
6 6 3.9924 -2.3859 -1.4857
7 8 3.6589 -2.6426 -2.6262
8 6 5.2175 -2.9881 -0.9212
9 6 5.7091 -4.1898 -1.4361
10 6 6.8522 -4.7475 -0.9054
11 6 7.5138 -4.1181 0.1382
12 9 8.6337 -4.6694 0.6552
13 6 7.0302 -2.9252 0.6530
14 6 7.7541 -2.2472 1.7876
15 9 9.1200 -2.5400 1.7105
16 9 7.5681 -0.8635 1.6989
17 6 5.8916 -2.3549 0.1249
18 6 3.4633 -1.2486 0.6896
19 6 2.0790 -0.7934 1.2151
20 1 2.1844 -0.1484 2.0875
21 7 1.2272 -1.9461 1.5178
22 6 1.2022 -2.4652 2.7848
23 1 1.8107 -2.0248 3.5607
24 6 0.3955 -3.5579 3.0714
25 7 -0.3457 -4.0948 2.1256
26 14 0.3557 -4.2611 4.8015
27 1 1.3936 -5.3152 4.9314
28 1 0.6239 -3.1787 5.7821
29 1 -0.9822 -4.8485 5.0663
30 1 -0.3634 0.4643 0.9168
31 1 -0.3634 0.5618 -0.8605
32 1 -0.3633 -1.0261 -0.0563
33 1 1.3130 -1.4785 -1.5750
34 1 2.3740 -0.1057 -1.9976
35 1 5.1940 -4.6815 -2.2481
36 1 7.2329 -5.6769 -1.3025
37 1 7.3585 -2.6068 2.7376
38 1 5.5186 -1.4229 0.5232
39 1 4.1931 -0.4464 0.7991
40 1 3.7960 -2.1404 1.2205
41 1 0.6808 -2.3418 0.8208
42 1 -0.9097 -4.8581 2.3259
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001054670624.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:31:34
Heat of formation + Delta-G solvation = -146.565887 kcal
Electronic energy + Delta-G solvation = -30638.592422 eV
Core-core repulsion = 25975.749101 eV
Total energy + Delta-G solvation = -4662.843321 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 342.130 amu
Computer time = 0.89 seconds
Orbital eigenvalues (eV)
-50.39885 -49.86240 -48.05738 -41.65415 -39.85822 -38.78990 -35.71127 -34.14661
-33.37882 -32.45056 -31.74926 -29.45579 -27.58736 -27.26586 -25.89547 -24.93202
-23.51462 -23.03327 -20.89652 -20.66893 -19.41858 -18.93875 -18.70451 -18.54923
-18.29710 -17.54453 -17.27823 -17.09378 -16.75474 -16.54014 -16.33436 -15.71874
-15.44913 -15.40911 -14.92183 -14.71100 -14.54860 -14.41664 -14.37819 -14.29736
-13.99697 -13.97140 -13.57571 -13.38275 -13.30770 -13.00307 -12.90925 -12.81595
-12.78055 -12.25326 -12.13338 -12.01802 -11.89066 -11.47471 -11.37925 -11.17464
-10.93187 -10.40430 -10.05554 -9.69389 -8.93527 -7.90436 -5.18165 -0.56052
-0.15447 1.49156 1.50112 1.50762 1.58649 1.90458 2.36363 2.55218
2.58624 2.83613 3.11947 3.16967 3.38871 3.43589 3.65130 3.73582
3.88452 3.90468 3.92837 3.95269 4.08398 4.14862 4.37005 4.41205
4.55612 4.63510 4.66592 4.71825 4.76464 4.82667 4.86008 4.94871
4.99801 5.04317 5.21316 5.25870 5.38973 5.46870 5.56423 5.62502
6.30447 6.44244 6.98826 7.38114 8.13657 8.35259 9.32938
Molecular weight = 342.13amu
Principal moments of inertia in cm(-1)
A = 0.009342 B = 0.004161 C = 0.003565
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2996.547453 B = 6727.792330 C = 7852.866031
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.125 4.125
2 C -0.100 4.100
3 H 0.121 0.879
4 C 0.114 3.886
5 N -0.598 5.598
6 C 0.566 3.434
7 O -0.582 6.582
8 C -0.151 4.151
9 C -0.023 4.023
10 C -0.152 4.152
11 C 0.148 3.852
12 F -0.124 7.124
13 C -0.217 4.217
14 C 0.317 3.683
15 F -0.203 7.203
16 F -0.199 7.199
17 C -0.031 4.031
18 C 0.067 3.933
19 C 0.158 3.842
20 H 0.093 0.907
21 N -0.720 5.720
22 C -0.230 4.230
23 H 0.087 0.913
24 C -0.074 4.074
25 N -0.970 5.970
26 Si 0.964 3.036
27 H -0.293 1.293
28 H -0.264 1.264
29 H -0.305 1.305
30 H 0.057 0.943
31 H 0.069 0.931
32 H 0.031 0.969
33 H 0.042 0.958
34 H 0.080 0.920
35 H 0.150 0.850
36 H 0.177 0.823
37 H 0.161 0.839
38 H 0.167 0.833
39 H 0.102 0.898
40 H 0.070 0.930
41 H 0.372 0.628
42 H 0.247 0.753
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 15.537 6.736 -2.779 17.161
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.183 4.183
2 C -0.120 4.120
3 H 0.139 0.861
4 C -0.008 4.008
5 N -0.328 5.328
6 C 0.356 3.644
7 O -0.464 6.464
8 C -0.155 4.155
9 C -0.042 4.042
10 C -0.170 4.170
11 C 0.128 3.872
12 F -0.102 7.102
13 C -0.219 4.219
14 C 0.264 3.736
15 F -0.184 7.184
16 F -0.180 7.180
17 C -0.049 4.049
18 C -0.058 4.058
19 C 0.048 3.952
20 H 0.111 0.889
21 N -0.358 5.358
22 C -0.362 4.362
23 H 0.104 0.896
24 C -0.266 4.266
25 N -0.621 5.621
26 Si 0.794 3.206
27 H -0.220 1.220
28 H -0.189 1.189
29 H -0.232 1.232
30 H 0.076 0.924
31 H 0.088 0.912
32 H 0.050 0.950
33 H 0.061 0.939
34 H 0.098 0.902
35 H 0.168 0.832
36 H 0.194 0.806
37 H 0.178 0.822
38 H 0.184 0.816
39 H 0.120 0.880
40 H 0.088 0.912
41 H 0.205 0.795
42 H 0.056 0.944
Dipole moment (debyes) X Y Z Total
from point charges 15.482 6.574 -3.176 17.117
hybrid contribution -0.396 -1.166 0.448 1.310
sum 15.086 5.407 -2.728 16.256
Atomic orbital electron populations
1.21515 0.93968 1.00962 1.01874 1.22549 0.96622 0.99870 0.92949
0.86070 1.22075 0.86888 0.94062 0.97802 1.48317 1.29205 1.43117
1.12193 1.18102 0.83384 0.78191 0.84708 1.90732 1.73165 1.62575
1.19966 1.19895 0.97012 0.98557 0.99987 1.21361 0.93524 0.92321
0.97000 1.21330 0.96114 1.02860 0.96720 1.17699 0.83727 0.91827
0.93937 1.91574 1.48557 1.84657 1.85392 1.20567 1.00369 0.97891
1.03044 1.20499 0.77058 0.76392 0.99658 1.93020 1.34620 1.93050
1.97737 1.93001 1.94920 1.32386 1.97660 1.21558 0.91648 0.99837
0.91862 1.23713 1.01240 1.01198 0.79616 1.21734 0.88371 0.88813
0.96315 0.88883 1.42540 1.50272 1.34025 1.09008 1.19671 1.19336
1.08662 0.88558 0.89561 1.25459 1.00379 1.00147 1.00610 1.69823
1.32375 1.26317 1.33620 0.85280 0.75925 0.78470 0.80934 1.22020
1.18863 1.23209 0.92360 0.91231 0.95020 0.93949 0.90176 0.83224
0.80554 0.82169 0.81576 0.87995 0.91192 0.79479 0.94437
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -3.62 8.71 71.98 0.63 -3.00 16
2 C -0.10 -2.63 3.42 -9.61 -0.03 -2.67 16
3 H 0.12 2.31 8.14 -2.39 -0.02 2.29 16
4 C 0.11 3.41 6.46 86.73 0.56 3.97 16
5 N -0.60 -18.89 3.33 -815.36 -2.71 -21.60 16
6 C 0.57 19.46 7.64 86.75 0.66 20.12 16
7 O -0.58 -23.59 16.93 -3.92 -0.07 -23.66 16
8 C -0.15 -4.30 5.67 -20.09 -0.11 -4.41 16
9 C -0.02 -0.58 9.59 22.52 0.22 -0.36 16
10 C -0.15 -3.09 10.01 22.27 0.22 -2.87 16
11 C 0.15 3.24 7.15 22.47 0.16 3.40 16
12 F -0.12 -2.73 15.41 44.97 0.69 -2.04 16
13 C -0.22 -4.74 5.74 -19.86 -0.11 -4.85 16
14 C 0.32 5.91 5.59 71.24 0.40 6.31 16
15 F -0.20 -4.44 15.48 44.97 0.70 -3.75 16
16 F -0.20 -4.01 16.47 44.97 0.74 -3.27 16
17 C -0.03 -0.74 7.42 22.52 0.17 -0.57 16
18 C 0.07 1.88 4.69 86.86 0.41 2.28 16
19 C 0.16 5.00 3.47 46.38 0.16 5.17 16
20 H 0.09 2.69 8.09 -2.39 -0.02 2.67 16
21 N -0.72 -31.78 4.59 -316.39 -1.45 -33.23 16
22 C -0.23 -11.39 9.96 84.03 0.84 -10.55 16
23 H 0.09 3.95 7.83 -2.91 -0.02 3.93 16
24 C -0.07 -3.97 5.50 84.86 0.47 -3.51 16
25 N -0.97 -57.43 13.06 21.65 0.28 -57.14 16
26 Si 0.96 43.74 29.55 68.60 2.03 45.77 16
27 H -0.29 -13.24 7.11 99.48 0.71 -12.53 16
28 H -0.26 -11.08 7.11 99.48 0.71 -10.38 16
29 H -0.30 -14.38 7.11 99.48 0.71 -13.68 16
30 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16
31 H 0.07 1.63 8.14 -2.39 -0.02 1.62 16
32 H 0.03 1.15 6.48 -2.39 -0.02 1.14 16
33 H 0.04 1.50 7.76 -2.39 -0.02 1.49 16
34 H 0.08 2.10 8.14 -2.38 -0.02 2.08 16
35 H 0.15 3.65 7.84 -2.91 -0.02 3.62 16
36 H 0.18 2.51 8.06 -2.91 -0.02 2.49 16
37 H 0.16 2.01 8.14 -2.38 -0.02 1.99 16
38 H 0.17 3.55 4.14 -2.91 -0.01 3.54 16
39 H 0.10 2.07 6.82 -2.39 -0.02 2.06 16
40 H 0.07 2.20 6.84 -2.39 -0.02 2.19 16
41 H 0.37 18.75 6.38 -92.71 -0.59 18.16 16
42 H 0.25 14.43 8.31 -92.71 -0.77 13.66 16
Total: -1.00 -67.78 356.41 5.33 -62.45
By element:
Atomic # 1 Polarization: 27.51 SS G_CDS: 0.49 Total: 28.00 kcal
Atomic # 6 Polarization: 3.83 SS G_CDS: 4.63 Total: 8.46 kcal
Atomic # 7 Polarization: -108.09 SS G_CDS: -3.88 Total: -111.97 kcal
Atomic # 8 Polarization: -23.59 SS G_CDS: -0.07 Total: -23.66 kcal
Atomic # 9 Polarization: -11.18 SS G_CDS: 2.13 Total: -9.05 kcal
Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.77 kcal
Total: -67.78 5.33 -62.45 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001054670624.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -84.115 kcal
(2) G-P(sol) polarization free energy of solvation -67.781 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.895 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.330 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.451 kcal
(6) G-S(sol) free energy of system = (1) + (5) -146.566 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.89 seconds