Wall clock time and date at job start Sat Apr 11 2020 06:31:32
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53003 * 1
3 3 C 1.52997 * 109.47235 * 2 1
4 4 H 1.08999 * 109.87356 * 305.39036 * 3 2 1
5 5 C 1.54424 * 109.87903 * 184.22243 * 3 2 1
6 6 H 1.08996 * 110.72347 * 336.73296 * 5 3 2
7 7 N 1.46497 * 110.75976 * 100.03583 * 5 3 2
8 8 C 1.34786 * 120.00027 * 199.94378 * 7 5 3
9 9 O 1.21581 * 119.99902 * 359.97438 * 8 7 5
10 10 C 1.47551 * 119.99673 * 180.02562 * 8 7 5
11 11 C 1.39921 * 120.17438 * 269.99013 * 10 8 7
12 12 F 1.35102 * 120.07574 * 0.03793 * 11 10 8
13 13 C 1.38176 * 119.85405 * 180.02562 * 11 10 8
14 14 C 1.38335 * 120.20682 * 0.02742 * 13 11 10
15 15 C 1.38445 * 120.36420 * 359.97438 * 14 13 11
16 16 F 1.35096 * 119.92936 * 179.97438 * 15 14 13
17 17 C 1.38444 * 120.14079 * 359.71621 * 15 14 13
18 18 F 1.35095 * 120.10952 * 180.27351 * 17 15 14
19 19 C 1.55150 * 102.89795 * 218.39144 * 5 3 2
20 20 C 1.54918 * 101.61646 * 35.49756 * 19 5 3
21 21 N 1.47026 * 109.88246 * 66.40574 * 3 2 1
22 22 C 1.36935 * 125.64555 * 298.39307 * 21 3 2
23 23 H 1.08000 * 120.00161 * 334.95416 * 22 21 3
24 24 C 1.38817 * 119.99956 * 154.95854 * 22 21 3
25 25 N 1.31613 * 120.00264 * 159.52859 * 24 22 21
26 26 Si 1.86799 * 119.99641 * 339.53016 * 24 22 21
27 27 H 1.48494 * 109.47441 * 84.72569 * 26 24 22
28 28 H 1.48506 * 109.46885 * 204.72664 * 26 24 22
29 29 H 1.48504 * 109.47218 * 324.72368 * 26 24 22
30 30 H 1.09002 * 109.47379 * 172.25628 * 1 2 3
31 31 H 1.09006 * 109.46814 * 292.25331 * 1 2 3
32 32 H 1.09001 * 109.47013 * 52.24976 * 1 2 3
33 33 H 1.08998 * 109.47011 * 239.99754 * 2 1 3
34 34 H 1.09002 * 109.46643 * 119.99797 * 2 1 3
35 35 H 0.96997 * 120.00301 * 19.94112 * 7 5 3
36 36 H 1.08001 * 119.89363 * 180.02562 * 13 11 10
37 37 H 1.08009 * 119.81666 * 179.97438 * 14 13 11
38 38 H 1.08996 * 111.00628 * 277.41232 * 19 5 3
39 39 H 1.08994 * 111.00652 * 153.58923 * 19 5 3
40 40 H 1.08999 * 110.36012 * 81.81147 * 20 19 5
41 41 H 1.08993 * 110.36725 * 204.13235 * 20 19 5
42 42 H 0.96999 * 120.00363 * 179.97438 * 25 24 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 1 1.6039 1.9897 -0.8357
5 6 3.5805 1.4547 -0.1069
6 1 3.9991 0.5117 0.2445
7 7 4.0034 1.7306 -1.4821
8 6 5.2461 1.3983 -1.8846
9 8 6.0163 0.8700 -1.1062
10 6 5.6721 1.6767 -3.2696
11 6 5.4735 0.7210 -4.2720
12 9 4.8896 -0.4606 -3.9749
13 6 5.8755 0.9885 -5.5667
14 6 6.4738 2.1973 -5.8740
15 6 6.6747 3.1492 -4.8890
16 9 7.2604 4.3265 -5.1988
17 6 6.2718 2.8992 -3.5882
18 9 6.4632 3.8307 -2.6287
19 6 3.9838 2.6194 0.8354
20 6 2.9255 2.4919 1.9596
21 7 1.6850 2.0984 1.2670
22 6 0.4127 2.3083 1.7278
23 1 -0.4106 2.3696 1.0316
24 6 0.1811 2.4424 3.0900
25 7 -0.9171 3.0292 3.5162
26 14 1.4284 1.7899 4.3180
27 1 2.4873 2.8079 4.5364
28 1 0.7490 1.4981 5.6059
29 1 2.0404 0.5450 3.7880
30 1 -0.3634 -1.0183 -0.1385
31 1 -0.3633 0.3892 0.9512
32 1 -0.3633 0.6292 -0.8126
33 1 1.8933 -0.5139 -0.8899
34 1 1.8933 -0.5138 0.8900
35 1 3.3891 2.1524 -2.1031
36 1 5.7220 0.2514 -6.3411
37 1 6.7860 2.3996 -6.8880
38 1 3.9001 3.5800 0.3273
39 1 4.9901 2.4738 1.2280
40 1 3.2214 1.7234 2.6736
41 1 2.7911 3.4485 2.4643
42 1 -1.0791 3.1226 4.4680
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001087707007.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:31:32
Heat of formation + Delta-G solvation = -112.752812 kcal
Electronic energy + Delta-G solvation = -30418.241911 eV
Core-core repulsion = 25756.864835 eV
Total energy + Delta-G solvation = -4661.377076 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 342.130 amu
Computer time = 0.79 seconds
Orbital eigenvalues (eV)
-50.00512 -49.54164 -49.06999 -40.29232 -38.92029 -37.90031 -34.36668 -32.56038
-32.42341 -31.70689 -30.60459 -29.35110 -27.22506 -25.30126 -24.03674 -23.47248
-22.20069 -21.54565 -20.51722 -19.76102 -18.82625 -18.42726 -18.26966 -17.20966
-17.04894 -16.82111 -16.37061 -16.21636 -15.95980 -15.43336 -15.11574 -15.04326
-14.99877 -14.79278 -14.54163 -14.02266 -13.65842 -13.60781 -13.16628 -12.93372
-12.69720 -12.49550 -12.36882 -12.34695 -12.21926 -11.92722 -11.46068 -11.13609
-10.93255 -10.69518 -10.47740 -10.33458 -10.31194 -10.03524 -9.89526 -9.76331
-9.38267 -9.23414 -9.00222 -8.62279 -7.04695 -5.98986 -3.33347 0.01383
0.14946 2.19309 2.43503 2.77668 3.07736 3.35053 3.40972 3.48160
3.51079 3.79633 3.86833 4.14238 4.25146 4.52545 4.78109 4.90160
4.98447 5.07915 5.10770 5.16350 5.17465 5.26182 5.32314 5.54535
5.76630 5.83738 5.89058 5.97298 6.05778 6.10728 6.23632 6.34572
6.49972 6.57605 6.59593 6.68902 6.72337 6.97813 7.30350 7.32634
7.72877 7.95372 8.28083 8.78824 9.63928 10.13944 11.16426
Molecular weight = 342.13amu
Principal moments of inertia in cm(-1)
A = 0.018318 B = 0.003110 C = 0.002903
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1528.194996 B = 9000.975244 C = 9643.871475
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.152 4.152
2 C -0.126 4.126
3 C 0.159 3.841
4 H 0.047 0.953
5 C 0.132 3.868
6 H 0.099 0.901
7 N -0.698 5.698
8 C 0.565 3.435
9 O -0.514 6.514
10 C -0.169 4.169
11 C 0.157 3.843
12 F -0.113 7.113
13 C -0.135 4.135
14 C -0.081 4.081
15 C 0.058 3.942
16 F -0.119 7.119
17 C 0.133 3.867
18 F -0.107 7.107
19 C -0.141 4.141
20 C 0.115 3.885
21 N -0.598 5.598
22 C -0.236 4.236
23 H 0.095 0.905
24 C 0.027 3.973
25 N -0.907 5.907
26 Si 0.880 3.120
27 H -0.285 1.285
28 H -0.302 1.302
29 H -0.274 1.274
30 H 0.032 0.968
31 H 0.093 0.907
32 H 0.041 0.959
33 H 0.043 0.957
34 H 0.057 0.943
35 H 0.403 0.597
36 H 0.162 0.838
37 H 0.162 0.838
38 H 0.073 0.927
39 H 0.070 0.930
40 H 0.027 0.973
41 H 0.062 0.938
42 H 0.264 0.736
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 14.147 -2.734 -21.411 25.807
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.209 4.209
2 C -0.165 4.165
3 C 0.052 3.948
4 H 0.065 0.935
5 C 0.028 3.972
6 H 0.117 0.883
7 N -0.348 5.348
8 C 0.348 3.652
9 O -0.390 6.390
10 C -0.174 4.174
11 C 0.137 3.863
12 F -0.091 7.091
13 C -0.154 4.154
14 C -0.100 4.100
15 C 0.038 3.962
16 F -0.098 7.098
17 C 0.112 3.888
18 F -0.085 7.085
19 C -0.180 4.180
20 C -0.010 4.010
21 N -0.324 5.324
22 C -0.363 4.363
23 H 0.112 0.888
24 C -0.172 4.172
25 N -0.549 5.549
26 Si 0.710 3.290
27 H -0.212 1.212
28 H -0.230 1.230
29 H -0.200 1.200
30 H 0.051 0.949
31 H 0.112 0.888
32 H 0.060 0.940
33 H 0.062 0.938
34 H 0.076 0.924
35 H 0.238 0.762
36 H 0.179 0.821
37 H 0.180 0.820
38 H 0.092 0.908
39 H 0.089 0.911
40 H 0.044 0.956
41 H 0.080 0.920
42 H 0.074 0.926
Dipole moment (debyes) X Y Z Total
from point charges 14.481 -3.009 -20.593 25.354
hybrid contribution 0.447 -0.007 0.711 0.840
sum 14.928 -3.016 -19.882 25.044
Atomic orbital electron populations
1.21927 0.95213 0.99278 1.04524 1.21918 0.97399 0.97140 1.00078
1.21210 0.89430 0.92771 0.91426 0.93521 1.22254 0.96039 0.99438
0.79481 0.88346 1.46008 1.13441 1.61057 1.14260 1.17558 0.82849
0.79340 0.85492 1.90856 1.52532 1.41953 1.53631 1.19933 1.06925
0.94389 0.96190 1.17292 0.95305 0.81612 0.92130 1.91625 1.80804
1.42848 1.93833 1.21042 1.00643 0.98543 0.95148 1.21053 0.97565
0.91508 0.99850 1.17462 1.02002 0.84836 0.91910 1.91585 1.81389
1.43630 1.93153 1.17238 0.99969 0.86526 0.85086 1.91635 1.92401
1.62726 1.61700 1.23147 0.99204 0.98187 0.97490 1.21937 0.86275
0.98819 0.93984 1.44758 1.01878 1.65948 1.19856 1.18543 0.82831
1.43597 0.91289 0.88800 1.25131 0.96088 0.99285 0.96737 1.69802
1.27084 1.43328 1.14733 0.86974 0.80908 0.80273 0.80861 1.21157
1.23028 1.19999 0.94931 0.88791 0.93970 0.93789 0.92384 0.76180
0.82089 0.81998 0.90795 0.91118 0.95589 0.91959 0.92619
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -2.82 9.01 37.16 0.33 -2.48 16
2 C -0.13 -2.26 5.46 -26.73 -0.15 -2.40 16
3 C 0.16 2.94 2.99 -66.90 -0.20 2.74 16
4 H 0.05 0.84 7.69 -51.93 -0.40 0.44 16
5 C 0.13 2.21 2.76 -66.05 -0.18 2.03 16
6 H 0.10 1.76 7.41 -51.93 -0.38 1.38 16
7 N -0.70 -9.69 5.20 -53.02 -0.28 -9.96 16
8 C 0.56 8.24 6.54 -12.46 -0.08 8.16 16
9 O -0.51 -9.37 16.84 5.29 0.09 -9.28 16
10 C -0.17 -1.90 5.64 -104.87 -0.59 -2.49 16
11 C 0.16 1.42 7.29 -38.97 -0.28 1.13 16
12 F -0.11 -1.19 16.83 2.25 0.04 -1.16 16
13 C -0.13 -0.73 10.01 -39.57 -0.40 -1.13 16
14 C -0.08 -0.41 10.01 -39.47 -0.39 -0.81 16
15 C 0.06 0.48 7.29 -39.43 -0.29 0.19 16
16 F -0.12 -1.09 17.18 2.25 0.04 -1.05 16
17 C 0.13 1.42 7.30 -38.90 -0.28 1.13 16
18 F -0.11 -1.36 16.74 2.25 0.04 -1.32 16
19 C -0.14 -2.49 6.76 -24.58 -0.17 -2.66 16
20 C 0.12 2.47 4.75 -2.53 -0.01 2.45 16
21 N -0.60 -13.59 2.85 -162.51 -0.46 -14.05 16
22 C -0.24 -6.22 7.86 -15.06 -0.12 -6.34 16
23 H 0.09 2.62 7.27 -52.49 -0.38 2.24 16
24 C 0.03 0.76 5.45 -17.43 -0.09 0.66 16
25 N -0.91 -27.08 13.97 55.49 0.78 -26.30 16
26 Si 0.88 22.25 24.35 -169.99 -4.14 18.11 16
27 H -0.28 -7.02 6.73 56.52 0.38 -6.64 16
28 H -0.30 -7.81 7.11 56.52 0.40 -7.40 16
29 H -0.27 -6.88 6.79 56.52 0.38 -6.50 16
30 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16
31 H 0.09 2.08 5.47 -51.93 -0.28 1.80 16
32 H 0.04 0.74 8.13 -51.93 -0.42 0.31 16
33 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16
34 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16
35 H 0.40 4.63 8.30 -40.82 -0.34 4.29 16
36 H 0.16 0.40 8.06 -52.49 -0.42 -0.03 16
37 H 0.16 0.31 8.06 -52.48 -0.42 -0.12 16
38 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16
39 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16
40 H 0.03 0.59 5.44 -51.93 -0.28 0.31 16
41 H 0.06 1.41 7.29 -51.93 -0.38 1.03 16
42 H 0.26 7.55 8.31 -40.82 -0.34 7.22 16
LS Contribution 355.84 15.07 5.36 5.36
Total: -1.00 -32.01 355.84 -6.45 -38.46
By element:
Atomic # 1 Polarization: 6.01 SS G_CDS: -5.01 Total: 1.00 kcal
Atomic # 6 Polarization: 3.09 SS G_CDS: -2.90 Total: 0.19 kcal
Atomic # 7 Polarization: -50.35 SS G_CDS: 0.04 Total: -50.32 kcal
Atomic # 8 Polarization: -9.37 SS G_CDS: 0.09 Total: -9.28 kcal
Atomic # 9 Polarization: -3.64 SS G_CDS: 0.11 Total: -3.53 kcal
Atomic # 14 Polarization: 22.25 SS G_CDS: -4.14 Total: 18.11 kcal
Total LS contribution 5.36 Total: 5.36 kcal
Total: -32.01 -6.45 -38.46 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001087707007.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -74.293 kcal
(2) G-P(sol) polarization free energy of solvation -32.012 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.305 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.448 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.460 kcal
(6) G-S(sol) free energy of system = (1) + (5) -112.753 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.79 seconds