Wall clock time and date at job start Sat Apr 11 2020 06:30:40
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52994 * 1
3 3 O 1.45202 * 109.46919 * 2 1
4 4 C 1.34230 * 116.99836 * 180.02562 * 3 2 1
5 5 O 1.20833 * 119.99930 * 359.97438 * 4 3 2
6 6 C 1.50697 * 120.00262 * 180.27336 * 4 3 2
7 7 C 1.52996 * 109.47491 * 179.72204 * 6 4 3
8 8 H 1.08999 * 109.47456 * 54.99697 * 7 6 4
9 9 C 1.50695 * 109.47310 * 174.99936 * 7 6 4
10 10 H 1.08005 * 120.00302 * 239.99738 * 9 7 6
11 11 C 1.37884 * 120.00111 * 59.99751 * 9 7 6
12 12 N 1.31510 * 119.99863 * 0.02562 * 11 9 7
13 13 Si 1.86800 * 119.99841 * 180.02562 * 11 9 7
14 14 H 1.48501 * 109.47365 * 60.00472 * 13 11 9
15 15 H 1.48505 * 109.46871 * 180.02562 * 13 11 9
16 16 H 1.48497 * 109.47303 * 299.99668 * 13 11 9
17 17 O 1.45203 * 109.46931 * 294.99585 * 7 6 4
18 18 C 1.34227 * 116.99812 * 149.99881 * 17 7 6
19 19 O 1.20832 * 120.00335 * 0.02562 * 18 17 7
20 20 C 1.50698 * 120.00021 * 180.02562 * 18 17 7
21 21 H 1.09003 * 115.55206 * 325.58423 * 20 18 17
22 22 C 1.52988 * 117.49480 * 111.23673 * 20 18 17
23 23 C 1.53101 * 117.49788 * 179.97438 * 20 18 17
24 24 C 1.52927 * 117.37464 * 145.22745 * 23 20 18
25 25 C 1.53069 * 109.68961 * 279.49659 * 24 23 20
26 26 S 1.81627 * 109.05704 * 299.81403 * 25 24 23
27 27 C 1.81627 * 102.49845 * 55.77045 * 26 25 24
28 28 C 1.52931 * 117.37354 * 359.77260 * 23 20 18
29 29 H 1.08999 * 109.47371 * 180.02562 * 1 2 3
30 30 H 1.08997 * 109.47687 * 300.00275 * 1 2 3
31 31 H 1.09002 * 109.47633 * 60.00402 * 1 2 3
32 32 H 1.08998 * 109.47242 * 239.99429 * 2 1 3
33 33 H 1.09004 * 109.46797 * 119.99245 * 2 1 3
34 34 H 1.09004 * 109.46801 * 299.72165 * 6 4 3
35 35 H 1.09000 * 109.47461 * 59.71633 * 6 4 3
36 36 H 0.96998 * 120.00236 * 180.02562 * 12 11 9
37 37 H 1.09003 * 117.49638 * 214.99826 * 22 20 18
38 38 H 1.08991 * 117.49545 * 359.97438 * 22 20 18
39 39 H 1.09006 * 109.43514 * 39.56005 * 24 23 20
40 40 H 1.08999 * 109.43880 * 159.42786 * 24 23 20
41 41 H 1.09001 * 109.54585 * 179.97438 * 25 24 23
42 42 H 1.09000 * 109.54184 * 59.68660 * 25 24 23
43 43 H 1.09003 * 109.53986 * 184.35775 * 27 26 25
44 44 H 1.08996 * 109.53793 * 64.10337 * 27 26 25
45 45 H 1.08996 * 109.43631 * 200.56911 * 28 23 20
46 46 H 1.09000 * 109.43645 * 320.43767 * 28 23 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 8 2.0139 1.3690 0.0000
4 6 3.3446 1.5449 -0.0005
5 8 4.0807 0.5866 -0.0005
6 6 3.9207 2.9374 0.0057
7 6 5.4485 2.8573 0.0107
8 1 5.7835 2.2522 -0.8318
9 6 6.0247 4.2448 -0.1070
10 1 6.6624 4.4958 -0.9418
11 6 5.7377 5.1940 0.8510
12 7 4.9616 4.8883 1.8678
13 14 6.4513 6.9141 0.7047
14 1 5.9918 7.5345 -0.5638
15 1 5.9957 7.7384 1.8529
16 1 7.9343 6.8368 0.7093
17 8 5.8973 2.2506 1.2512
18 6 7.0420 1.5510 1.2081
19 8 7.6493 1.4493 0.1684
20 6 7.5699 0.8923 2.4564
21 1 7.3859 1.4309 3.3861
22 6 7.5509 -0.6365 2.5104
23 6 8.8800 0.1082 2.3421
24 6 9.8243 0.1375 3.5446
25 6 10.6320 1.4377 3.5345
26 16 11.6032 1.5206 2.0019
27 6 10.3294 1.3431 0.7193
28 6 9.5473 0.0508 0.9672
29 1 -0.3634 -1.0276 0.0005
30 1 -0.3634 0.5138 0.8899
31 1 -0.3634 0.5138 -0.8900
32 1 1.8933 -0.5139 -0.8899
33 1 1.8932 -0.5137 0.8901
34 1 3.5878 3.4722 -0.8839
35 1 3.5816 3.4669 0.8960
36 1 4.7594 5.5562 2.5415
37 1 7.3547 -1.1036 3.4756
38 1 7.1562 -1.1658 1.6433
39 1 9.2422 0.0793 4.4644
40 1 10.5046 -0.7125 3.4923
41 1 11.3038 1.4563 4.3926
42 1 9.9531 2.2891 3.5823
43 1 10.8031 1.3000 -0.2615
44 1 9.6498 2.1942 0.7603
45 1 10.2293 -0.7987 0.9303
46 1 8.7838 -0.0643 0.1979
RHF calculation, no. of doubly occupied orbitals= 62
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000870617465.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:30:40
Heat of formation + Delta-G solvation = -157.826632 kcal
Electronic energy + Delta-G solvation = -29216.264218 eV
Core-core repulsion = 25197.940535 eV
Total energy + Delta-G solvation = -4018.323683 eV
No. of doubly occupied orbitals = 62
Molecular weight
(most abundant/longest-lived isotopes) = 342.138 amu
Computer time = 0.50 seconds
Orbital eigenvalues (eV)
-40.07885 -39.72510 -37.83084 -36.13440 -35.11579 -33.15130 -32.26750 -31.62783
-31.36822 -30.30169 -26.41203 -25.37618 -23.68437 -23.15759 -23.06603 -21.78120
-20.32025 -19.72111 -18.69031 -17.31590 -16.97915 -16.31206 -16.23774 -16.12948
-15.55623 -15.31093 -14.90237 -14.64866 -14.39873 -13.93831 -13.84615 -13.57288
-13.52520 -13.09525 -12.81414 -12.72087 -12.62111 -12.33346 -12.12489 -11.96513
-11.89731 -11.63680 -11.48661 -11.32272 -11.11166 -11.04360 -10.94454 -10.80426
-10.38097 -10.31717 -10.18344 -10.17550 -9.77955 -9.71469 -9.46638 -9.35919
-9.01359 -8.78979 -8.72496 -7.45687 -6.29043 -4.46636 2.04248 2.79270
2.96396 3.11407 3.18404 3.24302 3.26304 3.30728 3.75586 4.03403
4.22822 4.75560 4.83740 4.91350 4.98811 5.05103 5.10340 5.12884
5.16860 5.35251 5.40080 5.43792 5.54192 5.65250 5.72413 5.74854
5.76995 5.85993 5.86929 5.95268 5.95780 6.04661 6.08137 6.21894
6.22775 6.30304 6.45839 6.56358 6.61506 6.89052 6.97771 7.24058
7.63488 7.90527 8.00466 8.46255 8.61464 9.10804 9.31057 10.73123
Molecular weight = 342.14amu
Principal moments of inertia in cm(-1)
A = 0.009391 B = 0.004386 C = 0.003261
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2980.785206 B = 6381.754894 C = 8583.526797
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.150 4.150
2 C 0.059 3.941
3 O -0.366 6.366
4 C 0.458 3.542
5 O -0.517 6.517
6 C -0.103 4.103
7 C 0.233 3.767
8 H 0.045 0.955
9 C -0.547 4.547
10 H 0.069 0.931
11 C 0.083 3.917
12 N -0.860 5.860
13 Si 0.896 3.104
14 H -0.272 1.272
15 H -0.284 1.284
16 H -0.273 1.273
17 O -0.326 6.326
18 C 0.494 3.506
19 O -0.524 6.524
20 C -0.151 4.151
21 H 0.125 0.875
22 C -0.138 4.138
23 C -0.107 4.107
24 C -0.080 4.080
25 C -0.076 4.076
26 S -0.295 6.295
27 C -0.057 4.057
28 C -0.084 4.084
29 H 0.073 0.927
30 H 0.065 0.935
31 H 0.064 0.936
32 H 0.063 0.937
33 H 0.064 0.936
34 H 0.103 0.897
35 H 0.140 0.860
36 H 0.268 0.732
37 H 0.103 0.897
38 H 0.101 0.899
39 H 0.074 0.926
40 H 0.081 0.919
41 H 0.101 0.899
42 H 0.084 0.916
43 H 0.098 0.902
44 H 0.096 0.904
45 H 0.063 0.937
46 H 0.108 0.892
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.220 -9.276 2.920 9.728
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.207 4.207
2 C -0.015 4.015
3 O -0.284 6.284
4 C 0.302 3.698
5 O -0.405 6.405
6 C -0.140 4.140
7 C 0.180 3.820
8 H 0.063 0.937
9 C -0.584 4.584
10 H 0.087 0.913
11 C -0.124 4.124
12 N -0.496 5.496
13 Si 0.723 3.277
14 H -0.197 1.197
15 H -0.209 1.209
16 H -0.198 1.198
17 O -0.240 6.240
18 C 0.338 3.662
19 O -0.417 6.417
20 C -0.170 4.170
21 H 0.143 0.857
22 C -0.175 4.175
23 C -0.107 4.107
24 C -0.119 4.119
25 C -0.224 4.224
26 S -0.069 6.069
27 C -0.205 4.205
28 C -0.122 4.122
29 H 0.092 0.908
30 H 0.084 0.916
31 H 0.083 0.917
32 H 0.081 0.919
33 H 0.082 0.918
34 H 0.121 0.879
35 H 0.158 0.842
36 H 0.078 0.922
37 H 0.121 0.879
38 H 0.120 0.880
39 H 0.093 0.907
40 H 0.100 0.900
41 H 0.119 0.881
42 H 0.103 0.897
43 H 0.116 0.884
44 H 0.115 0.885
45 H 0.082 0.918
46 H 0.126 0.874
Dipole moment (debyes) X Y Z Total
from point charges 1.116 -9.363 2.644 9.793
hybrid contribution -1.027 0.801 0.207 1.319
sum 0.089 -8.562 2.851 9.025
Atomic orbital electron populations
1.21777 0.93276 1.02337 1.03351 1.22854 0.94873 0.81781 1.02005
1.86581 1.26116 1.30990 1.84699 1.24918 0.79480 0.94309 0.71063
1.90583 1.60253 1.43679 1.45996 1.21885 0.96809 0.88106 1.07228
1.20023 0.87992 0.92451 0.81523 0.93660 1.21323 1.32278 0.94375
1.10421 0.91288 1.25097 0.93801 0.99096 0.94451 1.69855 1.34133
1.34657 1.10912 0.86584 0.79976 0.83232 0.77953 1.19710 1.20904
1.19827 1.86582 1.36432 1.59169 1.41813 1.21867 0.80427 0.75851
0.88045 1.90448 1.58368 1.59886 1.32952 1.21931 1.01600 0.95124
0.98391 0.85740 1.23108 0.98815 0.91868 1.03714 1.21704 0.88511
1.03426 0.97108 1.21285 0.97265 0.97143 0.96172 1.23294 1.01069
1.01004 0.97026 1.86508 1.19629 1.96863 1.03947 1.23371 0.97359
1.02359 0.97415 1.21459 0.99856 0.95841 0.95065 0.90835 0.91588
0.91691 0.91889 0.91767 0.87888 0.84209 0.92195 0.87913 0.88036
0.90748 0.90050 0.88101 0.89709 0.88372 0.88538 0.91797 0.87398
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.58 10.29 37.15 0.38 -1.20 16
2 C 0.06 0.85 6.19 37.15 0.23 1.08 16
3 O -0.37 -6.63 10.22 -39.26 -0.40 -7.04 16
4 C 0.46 9.60 7.84 36.00 0.28 9.89 16
5 O -0.52 -11.84 15.17 -23.95 -0.36 -12.21 16
6 C -0.10 -2.28 5.23 -27.89 -0.15 -2.43 16
7 C 0.23 5.79 1.64 -27.89 -0.05 5.75 16
8 H 0.05 1.18 6.97 -51.93 -0.36 0.82 16
9 C -0.55 -14.35 8.91 -34.44 -0.31 -14.66 16
10 H 0.07 1.83 7.81 -52.48 -0.41 1.42 16
11 C 0.08 2.11 5.25 -17.82 -0.09 2.02 16
12 N -0.86 -22.23 10.93 55.43 0.61 -21.63 16
13 Si 0.90 20.05 29.54 -169.99 -5.02 15.02 16
14 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16
15 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16
16 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16
17 O -0.33 -8.12 8.53 -44.45 -0.38 -8.50 16
18 C 0.49 11.09 7.49 36.00 0.27 11.36 16
19 O -0.52 -12.20 10.56 -18.75 -0.20 -12.40 16
20 C -0.15 -2.66 6.01 -91.73 -0.55 -3.22 16
21 H 0.12 2.12 8.14 -51.93 -0.42 1.69 16
22 C -0.14 -1.99 9.60 -26.60 -0.26 -2.25 16
23 C -0.11 -1.57 1.76 -154.39 -0.27 -1.84 16
24 C -0.08 -0.96 5.46 -26.73 -0.15 -1.11 16
25 C -0.08 -0.99 6.47 37.19 0.24 -0.75 16
26 S -0.30 -4.51 22.25 -107.50 -2.39 -6.90 16
27 C -0.06 -0.95 5.92 37.20 0.22 -0.73 16
28 C -0.08 -1.31 4.69 -26.73 -0.13 -1.44 16
29 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16
30 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16
31 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16
32 H 0.06 0.88 8.13 -51.93 -0.42 0.46 16
33 H 0.06 0.93 8.13 -51.93 -0.42 0.50 16
34 H 0.10 2.09 8.14 -51.93 -0.42 1.67 16
35 H 0.14 3.33 6.22 -51.93 -0.32 3.01 16
36 H 0.27 6.62 8.31 -40.82 -0.34 6.28 16
37 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16
38 H 0.10 1.56 8.14 -51.93 -0.42 1.13 16
39 H 0.07 0.78 8.08 -51.93 -0.42 0.36 16
40 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16
41 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16
42 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16
43 H 0.10 1.55 8.14 -51.93 -0.42 1.13 16
44 H 0.10 1.92 6.57 -51.93 -0.34 1.58 16
45 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16
46 H 0.11 1.94 5.71 -51.93 -0.30 1.65 16
LS Contribution 384.90 15.07 5.80 5.80
Total: -1.00 -29.19 384.90 -9.87 -39.06
By element:
Atomic # 1 Polarization: 15.52 SS G_CDS: -7.21 Total: 8.32 kcal
Atomic # 6 Polarization: 0.78 SS G_CDS: -0.32 Total: 0.47 kcal
Atomic # 7 Polarization: -22.23 SS G_CDS: 0.61 Total: -21.63 kcal
Atomic # 8 Polarization: -38.80 SS G_CDS: -1.34 Total: -40.14 kcal
Atomic # 14 Polarization: 20.05 SS G_CDS: -5.02 Total: 15.02 kcal
Atomic # 16 Polarization: -4.51 SS G_CDS: -2.39 Total: -6.90 kcal
Total LS contribution 5.80 Total: 5.80 kcal
Total: -29.19 -9.87 -39.06 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000870617465.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -118.766 kcal
(2) G-P(sol) polarization free energy of solvation -29.190 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.956 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.871 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.060 kcal
(6) G-S(sol) free energy of system = (1) + (5) -157.827 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.50 seconds