Wall clock time and date at job start Sat Apr 11 2020 06:30:40
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52994 * 1
3 3 O 1.45202 * 109.46919 * 2 1
4 4 C 1.34230 * 116.99836 * 180.02562 * 3 2 1
5 5 O 1.20833 * 119.99930 * 359.97438 * 4 3 2
6 6 C 1.50697 * 120.00262 * 180.27336 * 4 3 2
7 7 C 1.52996 * 109.47491 * 179.72204 * 6 4 3
8 8 H 1.08999 * 109.47456 * 54.99697 * 7 6 4
9 9 C 1.50695 * 109.47310 * 174.99936 * 7 6 4
10 10 H 1.08005 * 120.00302 * 239.99738 * 9 7 6
11 11 C 1.37884 * 120.00111 * 59.99751 * 9 7 6
12 12 N 1.31510 * 119.99863 * 0.02562 * 11 9 7
13 13 Si 1.86800 * 119.99841 * 180.02562 * 11 9 7
14 14 H 1.48501 * 109.47365 * 60.00472 * 13 11 9
15 15 H 1.48505 * 109.46871 * 180.02562 * 13 11 9
16 16 H 1.48497 * 109.47303 * 299.99668 * 13 11 9
17 17 O 1.45203 * 109.46931 * 294.99585 * 7 6 4
18 18 C 1.34227 * 116.99812 * 149.99881 * 17 7 6
19 19 O 1.20832 * 120.00335 * 0.02562 * 18 17 7
20 20 C 1.50698 * 120.00021 * 180.02562 * 18 17 7
21 21 H 1.09003 * 115.55206 * 325.58423 * 20 18 17
22 22 C 1.52988 * 117.49480 * 111.23673 * 20 18 17
23 23 C 1.53101 * 117.49788 * 179.97438 * 20 18 17
24 24 C 1.52927 * 117.37464 * 145.22745 * 23 20 18
25 25 C 1.53069 * 109.68961 * 279.49659 * 24 23 20
26 26 S 1.81627 * 109.05704 * 299.81403 * 25 24 23
27 27 C 1.81627 * 102.49845 * 55.77045 * 26 25 24
28 28 C 1.52931 * 117.37354 * 359.77260 * 23 20 18
29 29 H 1.08999 * 109.47371 * 180.02562 * 1 2 3
30 30 H 1.08997 * 109.47687 * 300.00275 * 1 2 3
31 31 H 1.09002 * 109.47633 * 60.00402 * 1 2 3
32 32 H 1.08998 * 109.47242 * 239.99429 * 2 1 3
33 33 H 1.09004 * 109.46797 * 119.99245 * 2 1 3
34 34 H 1.09004 * 109.46801 * 299.72165 * 6 4 3
35 35 H 1.09000 * 109.47461 * 59.71633 * 6 4 3
36 36 H 0.96998 * 120.00236 * 180.02562 * 12 11 9
37 37 H 1.09003 * 117.49638 * 214.99826 * 22 20 18
38 38 H 1.08991 * 117.49545 * 359.97438 * 22 20 18
39 39 H 1.09006 * 109.43514 * 39.56005 * 24 23 20
40 40 H 1.08999 * 109.43880 * 159.42786 * 24 23 20
41 41 H 1.09001 * 109.54585 * 179.97438 * 25 24 23
42 42 H 1.09000 * 109.54184 * 59.68660 * 25 24 23
43 43 H 1.09003 * 109.53986 * 184.35775 * 27 26 25
44 44 H 1.08996 * 109.53793 * 64.10337 * 27 26 25
45 45 H 1.08996 * 109.43631 * 200.56911 * 28 23 20
46 46 H 1.09000 * 109.43645 * 320.43767 * 28 23 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 8 2.0139 1.3690 0.0000
4 6 3.3446 1.5449 -0.0005
5 8 4.0807 0.5866 -0.0005
6 6 3.9207 2.9374 0.0057
7 6 5.4485 2.8573 0.0107
8 1 5.7835 2.2522 -0.8318
9 6 6.0247 4.2448 -0.1070
10 1 6.6624 4.4958 -0.9418
11 6 5.7377 5.1940 0.8510
12 7 4.9616 4.8883 1.8678
13 14 6.4513 6.9141 0.7047
14 1 5.9918 7.5345 -0.5638
15 1 5.9957 7.7384 1.8529
16 1 7.9343 6.8368 0.7093
17 8 5.8973 2.2506 1.2512
18 6 7.0420 1.5510 1.2081
19 8 7.6493 1.4493 0.1684
20 6 7.5699 0.8923 2.4564
21 1 7.3859 1.4309 3.3861
22 6 7.5509 -0.6365 2.5104
23 6 8.8800 0.1082 2.3421
24 6 9.8243 0.1375 3.5446
25 6 10.6320 1.4377 3.5345
26 16 11.6032 1.5206 2.0019
27 6 10.3294 1.3431 0.7193
28 6 9.5473 0.0508 0.9672
29 1 -0.3634 -1.0276 0.0005
30 1 -0.3634 0.5138 0.8899
31 1 -0.3634 0.5138 -0.8900
32 1 1.8933 -0.5139 -0.8899
33 1 1.8932 -0.5137 0.8901
34 1 3.5878 3.4722 -0.8839
35 1 3.5816 3.4669 0.8960
36 1 4.7594 5.5562 2.5415
37 1 7.3547 -1.1036 3.4756
38 1 7.1562 -1.1658 1.6433
39 1 9.2422 0.0793 4.4644
40 1 10.5046 -0.7125 3.4923
41 1 11.3038 1.4563 4.3926
42 1 9.9531 2.2891 3.5823
43 1 10.8031 1.3000 -0.2615
44 1 9.6498 2.1942 0.7603
45 1 10.2293 -0.7987 0.9303
46 1 8.7838 -0.0643 0.1979
RHF calculation, no. of doubly occupied orbitals= 62
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000870617465.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:30:40
Heat of formation + Delta-G solvation = -170.846678 kcal
Electronic energy + Delta-G solvation = -29216.828809 eV
Core-core repulsion = 25197.940535 eV
Total energy + Delta-G solvation = -4018.888274 eV
No. of doubly occupied orbitals = 62
Molecular weight
(most abundant/longest-lived isotopes) = 342.138 amu
Computer time = 0.61 seconds
Orbital eigenvalues (eV)
-41.68123 -41.27967 -39.36941 -37.70901 -36.89559 -35.07782 -33.51171 -32.90770
-32.55734 -31.98348 -28.26987 -26.82215 -25.09450 -24.45215 -24.22179 -23.29266
-21.81967 -21.44118 -20.02776 -19.10376 -18.65742 -18.01323 -17.59751 -17.50490
-17.24410 -16.99180 -16.46732 -16.32629 -15.78104 -15.28292 -15.19954 -14.87705
-14.75199 -14.56777 -14.26699 -14.09909 -13.81987 -13.70555 -13.46888 -13.32745
-13.27697 -13.00967 -12.98300 -12.85221 -12.80500 -12.63010 -12.47241 -12.27071
-12.10397 -11.64303 -11.58159 -11.49562 -11.42903 -11.34295 -10.99193 -10.80601
-10.78017 -10.59949 -10.46713 -8.68741 -8.26081 -6.51402 0.85147 1.26769
1.38168 1.40773 1.47183 1.50365 1.61196 1.79863 2.18535 2.34504
2.67077 3.06795 3.52714 3.67444 3.73949 3.77095 3.92452 3.99908
4.03224 4.11950 4.21290 4.27360 4.33987 4.35693 4.46298 4.48037
4.53083 4.56778 4.68523 4.73781 4.80849 4.86256 4.92124 4.92995
4.99928 5.05076 5.10255 5.12877 5.16259 5.29497 5.36296 5.48225
5.62774 5.93293 6.20002 6.56853 6.84045 7.22218 7.36895 8.75716
Molecular weight = 342.14amu
Principal moments of inertia in cm(-1)
A = 0.009391 B = 0.004386 C = 0.003261
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2980.785206 B = 6381.754894 C = 8583.526797
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.142 4.142
2 C 0.048 3.952
3 O -0.364 6.364
4 C 0.465 3.535
5 O -0.541 6.541
6 C -0.096 4.096
7 C 0.235 3.765
8 H 0.018 0.982
9 C -0.574 4.574
10 H 0.052 0.948
11 C 0.051 3.949
12 N -0.874 5.874
13 Si 0.952 3.048
14 H -0.263 1.263
15 H -0.271 1.271
16 H -0.283 1.283
17 O -0.344 6.344
18 C 0.478 3.522
19 O -0.543 6.543
20 C -0.179 4.179
21 H 0.131 0.869
22 C -0.115 4.115
23 C -0.094 4.094
24 C -0.073 4.073
25 C -0.073 4.073
26 S -0.301 6.301
27 C -0.055 4.055
28 C -0.080 4.080
29 H 0.104 0.896
30 H 0.067 0.933
31 H 0.069 0.931
32 H 0.065 0.935
33 H 0.062 0.938
34 H 0.116 0.884
35 H 0.128 0.872
36 H 0.272 0.728
37 H 0.143 0.857
38 H 0.088 0.912
39 H 0.103 0.897
40 H 0.103 0.897
41 H 0.131 0.869
42 H 0.067 0.933
43 H 0.097 0.903
44 H 0.055 0.945
45 H 0.087 0.913
46 H 0.078 0.922
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.349 -10.439 4.958 11.562
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.199 4.199
2 C -0.025 4.025
3 O -0.282 6.282
4 C 0.311 3.689
5 O -0.431 6.431
6 C -0.134 4.134
7 C 0.182 3.818
8 H 0.036 0.964
9 C -0.610 4.610
10 H 0.070 0.930
11 C -0.154 4.154
12 N -0.509 5.509
13 Si 0.776 3.224
14 H -0.188 1.188
15 H -0.196 1.196
16 H -0.209 1.209
17 O -0.259 6.259
18 C 0.323 3.677
19 O -0.436 6.436
20 C -0.198 4.198
21 H 0.149 0.851
22 C -0.152 4.152
23 C -0.094 4.094
24 C -0.111 4.111
25 C -0.221 4.221
26 S -0.075 6.075
27 C -0.203 4.203
28 C -0.119 4.119
29 H 0.122 0.878
30 H 0.086 0.914
31 H 0.088 0.912
32 H 0.083 0.917
33 H 0.081 0.919
34 H 0.134 0.866
35 H 0.145 0.855
36 H 0.082 0.918
37 H 0.160 0.840
38 H 0.106 0.894
39 H 0.121 0.879
40 H 0.121 0.879
41 H 0.149 0.851
42 H 0.086 0.914
43 H 0.115 0.885
44 H 0.073 0.927
45 H 0.105 0.895
46 H 0.096 0.904
Dipole moment (debyes) X Y Z Total
from point charges 0.957 -10.531 4.683 11.565
hybrid contribution -1.001 1.091 -0.459 1.550
sum -0.044 -9.440 4.224 10.342
Atomic orbital electron populations
1.21808 0.89873 1.04470 1.03717 1.23293 0.97476 0.79608 1.02116
1.86549 1.24033 1.33641 1.83954 1.24484 0.80436 0.93351 0.70641
1.90567 1.61125 1.44181 1.47226 1.21663 0.95279 0.89255 1.07185
1.19862 0.89524 0.91399 0.80994 0.96352 1.21396 1.33171 0.95685
1.10766 0.92961 1.25637 0.93930 1.01939 0.93938 1.69931 1.34265
1.35630 1.11051 0.85720 0.78470 0.79531 0.78630 1.18766 1.19570
1.20932 1.86560 1.37843 1.59995 1.41463 1.22889 0.79554 0.75475
0.89756 1.90442 1.58488 1.60379 1.34309 1.21972 1.04762 0.97060
0.96018 0.85113 1.23261 0.97673 0.89096 1.05182 1.21860 0.88437
1.01401 0.97696 1.21348 0.97028 0.97091 0.95667 1.23440 1.01159
1.01124 0.96352 1.86484 1.19257 1.96962 1.04778 1.23186 0.97296
1.01280 0.98571 1.21379 0.99387 0.95986 0.95153 0.87762 0.91385
0.91157 0.91650 0.91921 0.86605 0.85472 0.91801 0.83956 0.89368
0.87915 0.87878 0.85063 0.91435 0.88507 0.92653 0.89464 0.90411
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.66 10.29 71.98 0.74 -1.92 16
2 C 0.05 1.35 6.19 71.98 0.45 1.79 16
3 O -0.36 -13.18 10.22 -51.41 -0.53 -13.70 16
4 C 0.47 20.05 7.84 71.23 0.56 20.61 16
5 O -0.54 -25.59 15.17 26.91 0.41 -25.19 16
6 C -0.10 -4.45 5.23 29.85 0.16 -4.30 16
7 C 0.24 12.38 1.64 29.85 0.05 12.42 16
8 H 0.02 1.03 6.97 -2.39 -0.02 1.02 16
9 C -0.57 -31.56 8.91 25.60 0.23 -31.33 16
10 H 0.05 2.95 7.81 -2.91 -0.02 2.93 16
11 C 0.05 2.69 5.25 84.66 0.44 3.13 16
12 N -0.87 -45.84 10.93 21.45 0.23 -45.61 16
13 Si 0.95 41.68 29.54 68.60 2.03 43.71 16
14 H -0.26 -11.08 7.11 99.48 0.71 -10.38 16
15 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16
16 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16
17 O -0.34 -17.98 8.53 -46.42 -0.40 -18.37 16
18 C 0.48 22.52 7.49 71.24 0.53 23.05 16
19 O -0.54 -27.08 10.56 21.94 0.23 -26.85 16
20 C -0.18 -6.30 6.01 -11.51 -0.07 -6.37 16
21 H 0.13 4.38 8.14 -2.39 -0.02 4.36 16
22 C -0.12 -3.11 9.60 30.68 0.29 -2.82 16
23 C -0.09 -2.61 1.76 -52.10 -0.09 -2.70 16
24 C -0.07 -1.49 5.46 30.59 0.17 -1.32 16
25 C -0.07 -1.72 6.47 72.01 0.47 -1.26 16
26 S -0.30 -8.87 22.25 -56.49 -1.26 -10.13 16
27 C -0.06 -1.90 5.92 72.01 0.43 -1.48 16
28 C -0.08 -2.53 4.69 30.60 0.14 -2.38 16
29 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16
30 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16
31 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16
32 H 0.07 1.78 8.13 -2.39 -0.02 1.76 16
33 H 0.06 1.76 8.13 -2.38 -0.02 1.74 16
34 H 0.12 4.90 8.14 -2.38 -0.02 4.88 16
35 H 0.13 6.25 6.22 -2.39 -0.01 6.24 16
36 H 0.27 13.46 8.31 -92.71 -0.77 12.69 16
37 H 0.14 2.73 8.14 -2.39 -0.02 2.71 16
38 H 0.09 2.65 8.14 -2.39 -0.02 2.63 16
39 H 0.10 1.62 8.08 -2.38 -0.02 1.60 16
40 H 0.10 1.77 8.14 -2.39 -0.02 1.76 16
41 H 0.13 2.36 8.14 -2.39 -0.02 2.34 16
42 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16
43 H 0.10 3.23 8.14 -2.39 -0.02 3.21 16
44 H 0.05 2.35 6.57 -2.39 -0.02 2.33 16
45 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16
46 H 0.08 2.94 5.71 -2.39 -0.01 2.92 16
Total: -1.00 -67.15 384.90 6.19 -60.97
By element:
Atomic # 1 Polarization: 29.06 SS G_CDS: 0.98 Total: 30.04 kcal
Atomic # 6 Polarization: 0.65 SS G_CDS: 4.49 Total: 5.14 kcal
Atomic # 7 Polarization: -45.84 SS G_CDS: 0.23 Total: -45.61 kcal
Atomic # 8 Polarization: -83.83 SS G_CDS: -0.28 Total: -84.11 kcal
Atomic # 14 Polarization: 41.68 SS G_CDS: 2.03 Total: 43.71 kcal
Atomic # 16 Polarization: -8.87 SS G_CDS: -1.26 Total: -10.13 kcal
Total: -67.15 6.19 -60.97 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000870617465.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -109.881 kcal
(2) G-P(sol) polarization free energy of solvation -67.154 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -177.036 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.189 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.965 kcal
(6) G-S(sol) free energy of system = (1) + (5) -170.847 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.61 seconds