Wall clock time and date at job start Sat Apr 11 2020 06:30:58
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 O 1.45196 * 109.47070 * 2 1
4 4 C 1.34234 * 116.99938 * 179.97438 * 3 2 1
5 5 O 1.20822 * 119.99973 * 0.02562 * 4 3 2
6 6 C 1.50700 * 120.00068 * 179.97438 * 4 3 2
7 7 C 1.52992 * 109.47257 * 180.02562 * 6 4 3
8 8 H 1.09006 * 109.47047 * 54.99685 * 7 6 4
9 9 C 1.50699 * 109.47279 * 174.99909 * 7 6 4
10 10 H 1.08003 * 119.99953 * 240.00101 * 9 7 6
11 11 C 1.37875 * 120.00163 * 59.99886 * 9 7 6
12 12 N 1.31519 * 119.99825 * 359.97438 * 11 9 7
13 13 Si 1.86797 * 120.00286 * 180.02562 * 11 9 7
14 14 H 1.48496 * 109.47230 * 89.99907 * 13 11 9
15 15 H 1.48501 * 109.47115 * 209.99969 * 13 11 9
16 16 H 1.48506 * 109.47083 * 330.00108 * 13 11 9
17 17 O 1.45200 * 109.47056 * 294.99756 * 7 6 4
18 18 C 1.34234 * 116.99977 * 149.99672 * 17 7 6
19 19 O 1.20821 * 119.99760 * 0.02562 * 18 17 7
20 20 C 1.50698 * 119.99862 * 180.02562 * 18 17 7
21 21 C 1.52459 * 108.79268 * 301.64576 * 20 18 17
22 22 C 1.54793 * 108.74038 * 174.61456 * 21 20 18
23 23 H 1.08998 * 114.45035 * 196.97640 * 22 21 20
24 24 C 1.54962 * 106.18007 * 324.12613 * 22 21 20
25 25 C 1.52457 * 111.72511 * 80.58128 * 24 22 21
26 26 C 1.54970 * 111.71539 * 359.97438 * 25 24 22
27 27 H 1.08997 * 114.36401 * 152.81745 * 26 25 24
28 28 C 1.52466 * 108.78973 * 178.35849 * 20 18 17
29 29 S 1.84396 * 102.42651 * 28.49853 * 26 25 24
30 30 H 1.08999 * 109.47084 * 60.00195 * 1 2 3
31 31 H 1.08999 * 109.47659 * 180.02562 * 1 2 3
32 32 H 1.08998 * 109.47592 * 300.00297 * 1 2 3
33 33 H 1.08996 * 109.47090 * 239.99632 * 2 1 3
34 34 H 1.08999 * 109.47084 * 119.99805 * 2 1 3
35 35 H 1.09004 * 109.46932 * 300.00373 * 6 4 3
36 36 H 1.08997 * 109.47392 * 59.99712 * 6 4 3
37 37 H 0.96997 * 120.00301 * 179.97438 * 12 11 9
38 38 H 1.09001 * 108.75935 * 60.00479 * 20 18 17
39 39 H 1.08999 * 109.50648 * 295.63272 * 21 20 18
40 40 H 1.09007 * 109.50292 * 55.74856 * 21 20 18
41 41 H 1.08999 * 109.04056 * 319.98262 * 24 22 21
42 42 H 1.09002 * 108.94702 * 201.11257 * 24 22 21
43 43 H 1.08996 * 109.03893 * 239.40562 * 25 24 22
44 44 H 1.08996 * 108.94332 * 120.52502 * 25 24 22
45 45 H 1.09011 * 109.49806 * 304.25311 * 28 20 18
46 46 H 1.08995 * 109.50532 * 64.36531 * 28 20 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 8 2.0140 1.3689 0.0000
4 6 3.3447 1.5448 0.0005
5 8 4.0807 0.5866 0.0005
6 6 3.9208 2.9374 0.0000
7 6 5.4486 2.8573 0.0001
8 1 5.7806 2.2492 -0.8414
9 6 6.0243 4.2444 -0.1243
10 1 6.6592 4.4925 -0.9621
11 6 5.7406 5.1969 0.8314
12 7 4.9671 4.8950 1.8513
13 14 6.4537 6.9165 0.6769
14 1 5.5187 7.7724 -0.0967
15 1 6.6493 7.4947 2.0306
16 1 7.7600 6.8493 -0.0263
17 8 5.9015 2.2548 1.2411
18 6 7.0462 1.5550 1.1966
19 8 7.6497 1.4498 0.1553
20 6 7.5783 0.9006 2.4455
21 6 7.7938 1.9725 3.5079
22 6 8.2096 1.2848 4.8310
23 1 8.1074 1.9117 5.7167
24 6 7.4169 -0.0452 4.8940
25 6 8.0698 -1.1320 4.0474
26 6 9.3536 -0.6194 3.3469
27 1 10.0889 -1.3948 3.1323
28 6 8.8568 0.1462 2.0980
29 16 9.9427 0.6883 4.5058
30 1 -0.3633 0.5138 -0.8900
31 1 -0.3634 -1.0276 0.0005
32 1 -0.3634 0.5139 0.8899
33 1 1.8933 -0.5139 -0.8899
34 1 1.8933 -0.5138 0.8900
35 1 3.5852 3.4690 -0.8905
36 1 3.5844 3.4701 0.8894
37 1 4.7678 5.5649 2.5239
38 1 6.8384 0.1882 2.8104
39 1 8.5672 2.6647 3.1749
40 1 6.8632 2.5164 3.6703
41 1 6.4035 0.1273 4.5313
42 1 7.3709 -0.3810 5.9300
43 1 7.3612 -1.4665 3.2898
44 1 8.3270 -1.9742 4.6898
45 1 8.6546 -0.5616 1.2939
46 1 9.6211 0.8538 1.7769
RHF calculation, no. of doubly occupied orbitals= 62
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000893297015.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:30:58
Heat of formation + Delta-G solvation = -178.719290 kcal
Electronic energy + Delta-G solvation = -29461.380378 eV
Core-core repulsion = 25442.150722 eV
Total energy + Delta-G solvation = -4019.229656 eV
No. of doubly occupied orbitals = 62
Molecular weight
(most abundant/longest-lived isotopes) = 342.138 amu
Computer time = 0.54 seconds
Orbital eigenvalues (eV)
-40.06807 -39.72834 -38.11719 -36.20518 -35.22917 -33.11473 -31.80683 -31.63235
-31.60726 -30.23323 -26.52596 -26.02116 -24.22892 -23.34054 -22.19747 -21.04391
-19.95288 -19.81662 -19.00900 -17.37215 -17.24535 -17.04442 -16.46961 -16.16853
-15.56073 -15.36245 -14.75214 -14.61309 -14.12341 -13.96972 -13.82037 -13.51329
-13.34328 -12.97328 -12.84639 -12.77957 -12.48104 -12.35992 -12.03717 -11.99503
-11.84020 -11.53147 -11.42751 -11.29269 -11.04286 -10.98418 -10.88797 -10.79403
-10.53926 -10.37120 -10.27464 -10.19870 -10.18609 -9.74543 -9.55561 -9.44627
-9.18878 -8.78377 -8.73735 -7.52910 -6.27368 -4.43951 1.98775 2.31833
2.96468 3.16535 3.26028 3.27227 3.32750 3.42807 3.89533 4.24693
4.38948 4.73824 4.84422 4.87413 5.02388 5.04602 5.11355 5.13295
5.15478 5.25648 5.32655 5.35490 5.42023 5.43539 5.74943 5.81124
5.85512 5.86236 5.89242 5.91656 6.02854 6.05306 6.10269 6.16194
6.23074 6.31554 6.48658 6.56764 6.59949 6.90800 6.98539 7.25499
7.65807 7.93113 8.02274 8.46537 8.63977 9.12917 9.33259 10.74869
Molecular weight = 342.14amu
Principal moments of inertia in cm(-1)
A = 0.008424 B = 0.004797 C = 0.003445
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3323.011787 B = 5834.993607 C = 8125.963336
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.150 4.150
2 C 0.059 3.941
3 O -0.366 6.366
4 C 0.458 3.542
5 O -0.518 6.518
6 C -0.102 4.102
7 C 0.231 3.769
8 H 0.044 0.956
9 C -0.545 4.545
10 H 0.069 0.931
11 C 0.083 3.917
12 N -0.860 5.860
13 Si 0.895 3.105
14 H -0.276 1.276
15 H -0.283 1.283
16 H -0.271 1.271
17 O -0.329 6.329
18 C 0.467 3.533
19 O -0.531 6.531
20 C -0.090 4.090
21 C -0.106 4.106
22 C -0.015 4.015
23 H 0.126 0.874
24 C -0.125 4.125
25 C -0.124 4.124
26 C -0.026 4.026
27 H 0.124 0.876
28 C -0.099 4.099
29 S -0.331 6.331
30 H 0.064 0.936
31 H 0.073 0.927
32 H 0.065 0.935
33 H 0.063 0.937
34 H 0.064 0.936
35 H 0.103 0.897
36 H 0.141 0.859
37 H 0.267 0.733
38 H 0.105 0.895
39 H 0.082 0.918
40 H 0.096 0.904
41 H 0.084 0.916
42 H 0.071 0.929
43 H 0.079 0.921
44 H 0.071 0.929
45 H 0.080 0.920
46 H 0.084 0.916
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.882 -9.676 5.190 11.352
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.207 4.207
2 C -0.015 4.015
3 O -0.284 6.284
4 C 0.302 3.698
5 O -0.406 6.406
6 C -0.140 4.140
7 C 0.178 3.822
8 H 0.062 0.938
9 C -0.582 4.582
10 H 0.087 0.913
11 C -0.123 4.123
12 N -0.496 5.496
13 Si 0.722 3.278
14 H -0.202 1.202
15 H -0.208 1.208
16 H -0.196 1.196
17 O -0.243 6.243
18 C 0.310 3.690
19 O -0.422 6.422
20 C -0.109 4.109
21 C -0.144 4.144
22 C -0.143 4.143
23 H 0.144 0.856
24 C -0.164 4.164
25 C -0.163 4.163
26 C -0.154 4.154
27 H 0.142 0.858
28 C -0.138 4.138
29 S -0.103 6.103
30 H 0.083 0.917
31 H 0.092 0.908
32 H 0.084 0.916
33 H 0.081 0.919
34 H 0.082 0.918
35 H 0.121 0.879
36 H 0.158 0.842
37 H 0.077 0.923
38 H 0.123 0.877
39 H 0.101 0.899
40 H 0.115 0.885
41 H 0.102 0.898
42 H 0.090 0.910
43 H 0.098 0.902
44 H 0.089 0.911
45 H 0.098 0.902
46 H 0.103 0.897
Dipole moment (debyes) X Y Z Total
from point charges -1.496 -9.567 5.446 11.110
hybrid contribution -0.665 0.436 -0.473 0.925
sum -2.161 -9.131 4.973 10.620
Atomic orbital electron populations
1.21777 0.93274 1.02333 1.03356 1.22852 0.94876 0.81807 1.01994
1.86584 1.26135 1.30964 1.84701 1.24945 0.79453 0.94339 0.71035
1.90582 1.60260 1.43702 1.46035 1.21889 0.96798 0.88046 1.07234
1.20013 0.87908 0.92559 0.81683 0.93795 1.21360 1.32251 0.94309
1.10276 0.91330 1.25070 0.93813 0.98998 0.94458 1.69860 1.34428
1.34413 1.10908 0.86536 0.79955 0.83581 0.77747 1.20169 1.20824
1.19570 1.86565 1.36737 1.59502 1.41533 1.22898 0.80593 0.76164
0.89331 1.90520 1.58960 1.59670 1.33056 1.21102 0.98350 0.98094
0.93381 1.22040 1.04329 0.96933 0.91141 1.24858 0.89601 0.98656
1.01206 0.85641 1.22291 1.00312 0.92890 1.00924 1.22314 0.95972
0.98879 0.99145 1.24543 0.98211 0.96710 0.95955 0.85789 1.21934
0.96926 0.99268 0.95701 1.88330 1.16409 1.45011 1.60561 0.91685
0.90844 0.91589 0.91888 0.91794 0.87930 0.84156 0.92312 0.87688
0.89898 0.88548 0.89756 0.90974 0.90203 0.91072 0.90199 0.89744
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.56 10.29 37.16 0.38 -1.18 16
2 C 0.06 0.84 6.19 37.16 0.23 1.07 16
3 O -0.37 -6.56 10.22 -39.27 -0.40 -6.96 16
4 C 0.46 9.53 7.84 36.01 0.28 9.81 16
5 O -0.52 -11.83 15.17 -23.94 -0.36 -12.20 16
6 C -0.10 -2.26 5.23 -27.89 -0.15 -2.40 16
7 C 0.23 5.79 1.64 -27.89 -0.05 5.74 16
8 H 0.04 1.17 6.97 -51.93 -0.36 0.81 16
9 C -0.55 -14.37 8.91 -34.44 -0.31 -14.67 16
10 H 0.07 1.85 7.81 -52.48 -0.41 1.44 16
11 C 0.08 2.11 5.25 -17.82 -0.09 2.02 16
12 N -0.86 -21.70 10.93 55.43 0.61 -21.09 16
13 Si 0.90 19.94 29.54 -169.99 -5.02 14.92 16
14 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16
15 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16
16 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16
17 O -0.33 -8.07 8.24 -44.46 -0.37 -8.43 16
18 C 0.47 10.69 7.19 36.00 0.26 10.95 16
19 O -0.53 -13.50 15.10 -18.75 -0.28 -13.78 16
20 C -0.09 -1.57 2.07 -92.32 -0.19 -1.76 16
21 C -0.11 -1.75 4.67 -26.06 -0.12 -1.87 16
22 C -0.02 -0.20 4.90 -24.75 -0.12 -0.32 16
23 H 0.13 1.48 8.14 -51.93 -0.42 1.06 16
24 C -0.13 -1.44 5.23 -25.97 -0.14 -1.58 16
25 C -0.12 -1.39 5.22 -25.97 -0.14 -1.52 16
26 C -0.03 -0.33 4.83 -24.80 -0.12 -0.45 16
27 H 0.12 1.34 8.14 -51.93 -0.42 0.92 16
28 C -0.10 -1.55 3.97 -26.12 -0.10 -1.66 16
29 S -0.33 -4.76 22.07 -107.50 -2.37 -7.13 16
30 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16
31 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16
32 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16
33 H 0.06 0.88 8.13 -51.93 -0.42 0.45 16
34 H 0.06 0.90 8.13 -51.93 -0.42 0.48 16
35 H 0.10 2.08 8.14 -51.93 -0.42 1.66 16
36 H 0.14 3.29 6.22 -51.93 -0.32 2.96 16
37 H 0.27 6.41 8.31 -40.82 -0.34 6.07 16
38 H 0.11 1.68 4.29 -51.93 -0.22 1.46 16
39 H 0.08 1.51 8.03 -51.93 -0.42 1.10 16
40 H 0.10 1.74 7.92 -51.93 -0.41 1.33 16
41 H 0.08 1.00 6.79 -51.93 -0.35 0.65 16
42 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16
43 H 0.08 0.90 6.81 -51.93 -0.35 0.54 16
44 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16
45 H 0.08 1.26 7.97 -51.92 -0.41 0.84 16
46 H 0.08 1.47 8.03 -51.93 -0.42 1.05 16
LS Contribution 376.56 15.07 5.67 5.67
Total: -1.00 -30.12 376.56 -9.94 -40.06
By element:
Atomic # 1 Polarization: 13.81 SS G_CDS: -7.04 Total: 6.77 kcal
Atomic # 6 Polarization: 2.55 SS G_CDS: -0.37 Total: 2.18 kcal
Atomic # 7 Polarization: -21.70 SS G_CDS: 0.61 Total: -21.09 kcal
Atomic # 8 Polarization: -39.96 SS G_CDS: -1.41 Total: -41.37 kcal
Atomic # 14 Polarization: 19.94 SS G_CDS: -5.02 Total: 14.92 kcal
Atomic # 16 Polarization: -4.76 SS G_CDS: -2.37 Total: -7.13 kcal
Total LS contribution 5.67 Total: 5.67 kcal
Total: -30.12 -9.94 -40.06 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000893297015.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -138.662 kcal
(2) G-P(sol) polarization free energy of solvation -30.119 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.781 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.938 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.057 kcal
(6) G-S(sol) free energy of system = (1) + (5) -178.719 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.54 seconds