Wall clock time and date at job start Sat Apr 11 2020 06:30:57
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 O 1.45196 * 109.47070 * 2 1
4 4 C 1.34234 * 116.99938 * 179.97438 * 3 2 1
5 5 O 1.20822 * 119.99973 * 0.02562 * 4 3 2
6 6 C 1.50700 * 120.00068 * 179.97438 * 4 3 2
7 7 C 1.52992 * 109.47257 * 180.02562 * 6 4 3
8 8 H 1.09006 * 109.47047 * 54.99685 * 7 6 4
9 9 C 1.50699 * 109.47279 * 174.99909 * 7 6 4
10 10 H 1.08003 * 119.99953 * 240.00101 * 9 7 6
11 11 C 1.37875 * 120.00163 * 59.99886 * 9 7 6
12 12 N 1.31519 * 119.99825 * 359.97438 * 11 9 7
13 13 Si 1.86797 * 120.00286 * 180.02562 * 11 9 7
14 14 H 1.48496 * 109.47230 * 89.99907 * 13 11 9
15 15 H 1.48501 * 109.47115 * 209.99969 * 13 11 9
16 16 H 1.48506 * 109.47083 * 330.00108 * 13 11 9
17 17 O 1.45200 * 109.47056 * 294.99756 * 7 6 4
18 18 C 1.34234 * 116.99977 * 149.99672 * 17 7 6
19 19 O 1.20821 * 119.99760 * 0.02562 * 18 17 7
20 20 C 1.50698 * 119.99862 * 180.02562 * 18 17 7
21 21 C 1.52459 * 108.79268 * 301.64576 * 20 18 17
22 22 C 1.54793 * 108.74038 * 174.61456 * 21 20 18
23 23 H 1.08998 * 114.45035 * 196.97640 * 22 21 20
24 24 C 1.54962 * 106.18007 * 324.12613 * 22 21 20
25 25 C 1.52457 * 111.72511 * 80.58128 * 24 22 21
26 26 C 1.54970 * 111.71539 * 359.97438 * 25 24 22
27 27 H 1.08997 * 114.36401 * 152.81745 * 26 25 24
28 28 C 1.52466 * 108.78973 * 178.35849 * 20 18 17
29 29 S 1.84396 * 102.42651 * 28.49853 * 26 25 24
30 30 H 1.08999 * 109.47084 * 60.00195 * 1 2 3
31 31 H 1.08999 * 109.47659 * 180.02562 * 1 2 3
32 32 H 1.08998 * 109.47592 * 300.00297 * 1 2 3
33 33 H 1.08996 * 109.47090 * 239.99632 * 2 1 3
34 34 H 1.08999 * 109.47084 * 119.99805 * 2 1 3
35 35 H 1.09004 * 109.46932 * 300.00373 * 6 4 3
36 36 H 1.08997 * 109.47392 * 59.99712 * 6 4 3
37 37 H 0.96997 * 120.00301 * 179.97438 * 12 11 9
38 38 H 1.09001 * 108.75935 * 60.00479 * 20 18 17
39 39 H 1.08999 * 109.50648 * 295.63272 * 21 20 18
40 40 H 1.09007 * 109.50292 * 55.74856 * 21 20 18
41 41 H 1.08999 * 109.04056 * 319.98262 * 24 22 21
42 42 H 1.09002 * 108.94702 * 201.11257 * 24 22 21
43 43 H 1.08996 * 109.03893 * 239.40562 * 25 24 22
44 44 H 1.08996 * 108.94332 * 120.52502 * 25 24 22
45 45 H 1.09011 * 109.49806 * 304.25311 * 28 20 18
46 46 H 1.08995 * 109.50532 * 64.36531 * 28 20 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 8 2.0140 1.3689 0.0000
4 6 3.3447 1.5448 0.0005
5 8 4.0807 0.5866 0.0005
6 6 3.9208 2.9374 0.0000
7 6 5.4486 2.8573 0.0001
8 1 5.7806 2.2492 -0.8414
9 6 6.0243 4.2444 -0.1243
10 1 6.6592 4.4925 -0.9621
11 6 5.7406 5.1969 0.8314
12 7 4.9671 4.8950 1.8513
13 14 6.4537 6.9165 0.6769
14 1 5.5187 7.7724 -0.0967
15 1 6.6493 7.4947 2.0306
16 1 7.7600 6.8493 -0.0263
17 8 5.9015 2.2548 1.2411
18 6 7.0462 1.5550 1.1966
19 8 7.6497 1.4498 0.1553
20 6 7.5783 0.9006 2.4455
21 6 7.7938 1.9725 3.5079
22 6 8.2096 1.2848 4.8310
23 1 8.1074 1.9117 5.7167
24 6 7.4169 -0.0452 4.8940
25 6 8.0698 -1.1320 4.0474
26 6 9.3536 -0.6194 3.3469
27 1 10.0889 -1.3948 3.1323
28 6 8.8568 0.1462 2.0980
29 16 9.9427 0.6883 4.5058
30 1 -0.3633 0.5138 -0.8900
31 1 -0.3634 -1.0276 0.0005
32 1 -0.3634 0.5139 0.8899
33 1 1.8933 -0.5139 -0.8899
34 1 1.8933 -0.5138 0.8900
35 1 3.5852 3.4690 -0.8905
36 1 3.5844 3.4701 0.8894
37 1 4.7678 5.5649 2.5239
38 1 6.8384 0.1882 2.8104
39 1 8.5672 2.6647 3.1749
40 1 6.8632 2.5164 3.6703
41 1 6.4035 0.1273 4.5313
42 1 7.3709 -0.3810 5.9300
43 1 7.3612 -1.4665 3.2898
44 1 8.3270 -1.9742 4.6898
45 1 8.6546 -0.5616 1.2939
46 1 9.6211 0.8538 1.7769
RHF calculation, no. of doubly occupied orbitals= 62
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000893297015.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:30:57
Heat of formation + Delta-G solvation = -192.748245 kcal
Electronic energy + Delta-G solvation = -29461.988719 eV
Core-core repulsion = 25442.150722 eV
Total energy + Delta-G solvation = -4019.837997 eV
No. of doubly occupied orbitals = 62
Molecular weight
(most abundant/longest-lived isotopes) = 342.138 amu
Computer time = 0.61 seconds
Orbital eigenvalues (eV)
-41.69653 -41.27223 -39.62210 -37.81836 -37.06807 -35.06277 -33.12141 -32.84315
-32.79073 -31.89428 -28.26179 -27.45273 -25.40546 -24.80002 -23.60972 -22.61278
-21.53287 -20.96718 -20.50667 -19.05436 -18.86214 -18.31608 -18.20936 -17.63586
-17.22818 -17.10077 -16.51304 -16.23735 -15.45010 -15.33444 -15.17045 -14.71240
-14.66653 -14.51423 -14.14661 -13.99852 -13.90438 -13.64271 -13.51390 -13.33112
-13.17784 -12.97480 -12.84522 -12.78455 -12.64055 -12.60020 -12.45477 -12.12768
-12.01474 -11.87364 -11.58118 -11.50262 -11.47370 -11.40922 -11.30435 -11.03857
-10.77919 -10.67732 -10.64032 -8.68633 -8.23799 -6.48548 0.90411 1.24605
1.28304 1.38730 1.42840 1.51376 1.61101 1.81125 2.20930 2.36907
3.07399 3.32773 3.54488 3.68411 3.80214 3.90503 3.93464 4.01487
4.02920 4.08618 4.13584 4.15035 4.20665 4.35708 4.44888 4.50142
4.58329 4.58475 4.78377 4.82182 4.85275 4.88667 4.94049 5.00083
5.04183 5.05871 5.14167 5.14576 5.20209 5.24248 5.31534 5.50043
5.64553 5.94973 6.14278 6.57807 6.85504 7.20753 7.33951 8.78107
Molecular weight = 342.14amu
Principal moments of inertia in cm(-1)
A = 0.008424 B = 0.004797 C = 0.003445
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3323.011787 B = 5834.993607 C = 8125.963336
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.142 4.142
2 C 0.048 3.952
3 O -0.364 6.364
4 C 0.466 3.534
5 O -0.542 6.542
6 C -0.095 4.095
7 C 0.231 3.769
8 H 0.014 0.986
9 C -0.576 4.576
10 H 0.049 0.951
11 C 0.055 3.945
12 N -0.868 5.868
13 Si 0.950 3.050
14 H -0.262 1.262
15 H -0.274 1.274
16 H -0.284 1.284
17 O -0.336 6.336
18 C 0.453 3.547
19 O -0.565 6.565
20 C -0.079 4.079
21 C -0.100 4.100
22 C -0.002 4.002
23 H 0.144 0.856
24 C -0.125 4.125
25 C -0.124 4.124
26 C -0.010 4.010
27 H 0.149 0.851
28 C -0.096 4.096
29 S -0.362 6.362
30 H 0.069 0.931
31 H 0.103 0.897
32 H 0.068 0.932
33 H 0.064 0.936
34 H 0.064 0.936
35 H 0.116 0.884
36 H 0.131 0.869
37 H 0.273 0.727
38 H 0.126 0.874
39 H 0.057 0.943
40 H 0.078 0.922
41 H 0.081 0.919
42 H 0.098 0.902
43 H 0.081 0.919
44 H 0.099 0.901
45 H 0.077 0.923
46 H 0.059 0.941
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.070 -10.807 7.057 13.534
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.199 4.199
2 C -0.025 4.025
3 O -0.281 6.281
4 C 0.311 3.689
5 O -0.433 6.433
6 C -0.132 4.132
7 C 0.178 3.822
8 H 0.033 0.967
9 C -0.612 4.612
10 H 0.067 0.933
11 C -0.151 4.151
12 N -0.503 5.503
13 Si 0.775 3.225
14 H -0.187 1.187
15 H -0.199 1.199
16 H -0.209 1.209
17 O -0.251 6.251
18 C 0.298 3.702
19 O -0.458 6.458
20 C -0.097 4.097
21 C -0.139 4.139
22 C -0.130 4.130
23 H 0.162 0.838
24 C -0.164 4.164
25 C -0.163 4.163
26 C -0.138 4.138
27 H 0.167 0.833
28 C -0.135 4.135
29 S -0.135 6.135
30 H 0.088 0.912
31 H 0.122 0.878
32 H 0.087 0.913
33 H 0.083 0.917
34 H 0.082 0.918
35 H 0.134 0.866
36 H 0.149 0.851
37 H 0.083 0.917
38 H 0.144 0.856
39 H 0.076 0.924
40 H 0.097 0.903
41 H 0.100 0.900
42 H 0.117 0.883
43 H 0.100 0.900
44 H 0.117 0.883
45 H 0.096 0.904
46 H 0.078 0.922
Dipole moment (debyes) X Y Z Total
from point charges -2.721 -10.700 7.328 13.251
hybrid contribution -0.335 0.749 -1.106 1.377
sum -3.056 -9.952 6.222 12.128
Atomic orbital electron populations
1.21808 0.89911 1.04446 1.03718 1.23294 0.97447 0.79624 1.02155
1.86551 1.23995 1.33619 1.83933 1.24493 0.80431 0.93346 0.70601
1.90567 1.61154 1.44223 1.47309 1.21651 0.94942 0.89257 1.07352
1.19897 0.89705 0.91494 0.81074 0.96739 1.21389 1.33463 0.95642
1.10745 0.93304 1.25569 0.93909 1.01680 0.93934 1.69913 1.34123
1.35412 1.10849 0.85692 0.78817 0.79996 0.77993 1.18657 1.19879
1.20946 1.86559 1.37562 1.59856 1.41123 1.24078 0.79733 0.75512
0.90838 1.90488 1.59578 1.60882 1.34888 1.21223 0.99468 0.98281
0.90778 1.21934 1.02632 0.96412 0.92965 1.24900 0.88937 0.99665
0.99514 0.83810 1.22337 0.99561 0.91718 1.02747 1.22354 0.94869
0.99541 0.99515 1.24634 0.99490 0.96069 0.93604 0.83317 1.21891
0.95307 0.98831 0.97513 1.88492 1.17753 1.46297 1.60957 0.91229
0.87805 0.91318 0.91736 0.91766 0.86634 0.85132 0.91708 0.85620
0.92428 0.90297 0.90033 0.88294 0.90034 0.88265 0.90446 0.92193
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.57 10.29 71.98 0.74 -1.83 16
2 C 0.05 1.30 6.19 71.98 0.45 1.75 16
3 O -0.36 -12.82 10.22 -51.46 -0.53 -13.34 16
4 C 0.47 19.66 7.84 71.24 0.56 20.22 16
5 O -0.54 -25.29 15.17 26.94 0.41 -24.88 16
6 C -0.09 -4.29 5.23 29.85 0.16 -4.13 16
7 C 0.23 12.15 1.64 29.85 0.05 12.20 16
8 H 0.01 0.83 6.97 -2.38 -0.02 0.81 16
9 C -0.58 -31.67 8.91 25.60 0.23 -31.44 16
10 H 0.05 2.79 7.81 -2.91 -0.02 2.77 16
11 C 0.06 2.85 5.25 84.65 0.44 3.29 16
12 N -0.87 -44.06 10.93 21.45 0.23 -43.82 16
13 Si 0.95 41.24 29.54 68.60 2.03 43.26 16
14 H -0.26 -10.75 7.11 99.48 0.71 -10.04 16
15 H -0.27 -11.44 7.11 99.48 0.71 -10.74 16
16 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16
17 O -0.34 -17.19 8.24 -46.49 -0.38 -17.57 16
18 C 0.45 21.68 7.19 71.24 0.51 22.19 16
19 O -0.57 -30.42 15.10 21.98 0.33 -30.08 16
20 C -0.08 -2.78 2.07 -11.90 -0.02 -2.80 16
21 C -0.10 -3.37 4.67 31.03 0.14 -3.22 16
22 C 0.00 -0.06 4.90 31.88 0.16 0.10 16
23 H 0.14 3.08 8.14 -2.39 -0.02 3.06 16
24 C -0.12 -2.49 5.23 31.09 0.16 -2.33 16
25 C -0.12 -2.37 5.22 31.09 0.16 -2.20 16
26 C -0.01 -0.23 4.83 31.84 0.15 -0.08 16
27 H 0.15 2.78 8.14 -2.39 -0.02 2.76 16
28 C -0.10 -3.02 3.97 30.99 0.12 -2.90 16
29 S -0.36 -9.92 22.07 -56.49 -1.25 -11.17 16
30 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16
31 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16
32 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16
33 H 0.06 1.72 8.13 -2.39 -0.02 1.70 16
34 H 0.06 1.73 8.13 -2.39 -0.02 1.71 16
35 H 0.12 4.81 8.14 -2.38 -0.02 4.79 16
36 H 0.13 6.22 6.22 -2.39 -0.01 6.21 16
37 H 0.27 12.99 8.31 -92.71 -0.77 12.22 16
38 H 0.13 3.93 4.29 -2.39 -0.01 3.91 16
39 H 0.06 2.20 8.03 -2.39 -0.02 2.18 16
40 H 0.08 2.92 7.92 -2.38 -0.02 2.90 16
41 H 0.08 1.72 6.79 -2.39 -0.02 1.70 16
42 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16
43 H 0.08 1.58 6.81 -2.39 -0.02 1.57 16
44 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16
45 H 0.08 2.46 7.97 -2.38 -0.02 2.44 16
46 H 0.06 2.17 8.03 -2.39 -0.02 2.15 16
Total: -1.00 -68.08 376.56 5.84 -62.24
By element:
Atomic # 1 Polarization: 25.58 SS G_CDS: 0.98 Total: 26.57 kcal
Atomic # 6 Polarization: 4.79 SS G_CDS: 4.01 Total: 8.81 kcal
Atomic # 7 Polarization: -44.06 SS G_CDS: 0.23 Total: -43.82 kcal
Atomic # 8 Polarization: -85.71 SS G_CDS: -0.17 Total: -85.88 kcal
Atomic # 14 Polarization: 41.24 SS G_CDS: 2.03 Total: 43.26 kcal
Atomic # 16 Polarization: -9.92 SS G_CDS: -1.25 Total: -11.17 kcal
Total: -68.08 5.84 -62.24 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000893297015.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -130.510 kcal
(2) G-P(sol) polarization free energy of solvation -68.079 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -198.589 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.841 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.238 kcal
(6) G-S(sol) free energy of system = (1) + (5) -192.748 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.61 seconds