Wall clock time and date at job start Sat Apr 11 2020 06:33:05
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46507 * 1
3 3 C 1.34770 * 120.00202 * 2 1
4 4 O 1.21554 * 120.00245 * 185.81584 * 3 2 1
5 5 C 1.47850 * 119.99894 * 5.81206 * 3 2 1
6 6 C 1.39598 * 120.14508 * 35.02336 * 5 3 2
7 7 C 1.37930 * 119.85141 * 179.97438 * 6 5 3
8 8 C 1.38379 * 120.14943 * 359.97438 * 7 6 5
9 9 C 1.38339 * 120.29143 * 0.04212 * 8 7 6
10 10 C 1.50702 * 119.92569 * 179.97438 * 9 8 7
11 11 F 1.39892 * 109.47108 * 359.97438 * 10 9 8
12 12 F 1.39895 * 109.46905 * 120.00177 * 10 9 8
13 13 F 1.39896 * 109.46700 * 239.99648 * 10 9 8
14 14 C 1.37977 * 120.14332 * 359.69676 * 9 8 7
15 15 C 1.46504 * 119.99608 * 179.97438 * 2 1 3
16 16 H 1.09001 * 110.91189 * 183.90452 * 15 2 1
17 17 C 1.55148 * 111.00205 * 60.00566 * 15 2 1
18 18 C 1.54328 * 102.94097 * 206.42209 * 17 15 2
19 19 N 1.47020 * 107.27037 * 22.19090 * 18 17 15
20 20 C 1.36938 * 125.64912 * 181.03060 * 19 18 17
21 21 H 1.07997 * 120.00290 * 174.91781 * 20 19 18
22 22 C 1.38818 * 119.99861 * 354.91278 * 20 19 18
23 23 N 1.31620 * 119.99962 * 214.21105 * 22 20 19
24 24 Si 1.86798 * 119.99666 * 34.48526 * 22 20 19
25 25 H 1.48506 * 109.47010 * 173.99086 * 24 22 20
26 26 H 1.48500 * 109.47279 * 293.98997 * 24 22 20
27 27 H 1.48492 * 109.47128 * 53.99301 * 24 22 20
28 28 C 1.47422 * 108.70567 * 1.28699 * 19 18 17
29 29 H 1.09003 * 109.46818 * 274.70810 * 1 2 3
30 30 H 1.09002 * 109.47046 * 34.70536 * 1 2 3
31 31 H 1.08990 * 109.47014 * 154.70646 * 1 2 3
32 32 H 1.08004 * 120.06877 * 359.95708 * 6 5 3
33 33 H 1.08003 * 119.92776 * 180.02562 * 7 6 5
34 34 H 1.07998 * 119.85572 * 180.02562 * 8 7 6
35 35 H 1.08002 * 120.07490 * 180.27032 * 14 9 8
36 36 H 1.09000 * 110.72708 * 88.05595 * 17 15 2
37 37 H 1.09004 * 110.87523 * 324.84985 * 17 15 2
38 38 H 1.09008 * 109.87957 * 262.77457 * 18 17 15
39 39 H 1.08999 * 109.88366 * 141.61049 * 18 17 15
40 40 H 0.97001 * 119.99783 * 5.28128 * 23 22 20
41 41 H 1.08999 * 110.36405 * 94.48154 * 28 19 18
42 42 H 1.08990 * 110.37151 * 216.80772 * 28 19 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4651 0.0000 0.0000
3 6 2.1390 1.1671 0.0000
4 8 3.3498 1.1698 -0.1067
5 6 1.4054 2.4443 0.1297
6 6 0.2644 2.5192 0.9305
7 6 -0.4149 3.7139 1.0475
8 6 0.0325 4.8367 0.3738
9 6 1.1623 4.7692 -0.4217
10 6 1.6419 5.9970 -1.1522
11 9 0.7887 7.0695 -0.8716
12 9 2.9395 6.3110 -0.7344
13 9 1.6424 5.7498 -2.5291
14 6 1.8542 3.5817 -0.5431
15 6 2.1975 -1.2688 0.0006
16 1 3.2718 -1.0979 0.0698
17 6 1.8484 -2.1129 -1.2535
18 6 2.1063 -3.5588 -0.7796
19 7 2.0264 -3.5578 0.6884
20 6 2.2161 -4.6453 1.4988
21 1 2.2169 -4.5253 2.5721
22 6 2.4073 -5.9018 0.9407
23 7 1.9411 -6.9708 1.5509
24 14 3.3329 -6.0762 -0.6725
25 1 3.5273 -7.5163 -0.9785
26 1 2.5513 -5.4396 -1.7629
27 1 4.6558 -5.4115 -0.5584
28 6 1.7020 -2.1936 1.1433
29 1 -0.3633 0.0844 1.0242
30 1 -0.3633 0.8449 -0.5851
31 1 -0.3633 -0.9291 -0.4390
32 1 -0.0857 1.6436 1.4569
33 1 -1.2976 3.7733 1.6670
34 1 -0.5029 5.7698 0.4691
35 1 2.7386 3.5313 -1.1610
36 1 2.5043 -1.8570 -2.0856
37 1 0.8033 -1.9794 -1.5330
38 1 3.0981 -3.8815 -1.0967
39 1 1.3482 -4.2248 -1.1917
40 1 1.3986 -6.8756 2.3493
41 1 0.6263 -2.0858 1.2822
42 1 2.2296 -1.9671 2.0697
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001033604915.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:33:05
Heat of formation + Delta-G solvation = -105.102109 kcal
Electronic energy + Delta-G solvation = -29704.544055 eV
Core-core repulsion = 25043.498738 eV
Total energy + Delta-G solvation = -4661.045316 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 342.130 amu
Computer time = 0.69 seconds
Orbital eigenvalues (eV)
-50.53664 -48.06856 -47.97393 -40.82227 -39.08736 -37.61939 -35.26986 -32.91320
-32.20274 -31.69121 -29.56617 -28.31061 -27.22348 -26.38371 -24.73847 -23.45864
-22.63425 -21.21920 -20.58991 -19.54880 -18.84769 -18.75967 -18.56959 -17.51672
-17.16282 -16.79839 -16.37746 -15.80746 -15.24101 -15.03013 -14.88521 -14.76168
-14.60101 -14.42870 -14.28488 -14.14281 -14.05403 -13.70972 -13.52889 -13.34923
-13.23101 -13.13534 -12.81941 -12.64460 -12.46395 -12.11964 -12.05755 -11.67157
-11.38553 -11.09789 -11.06630 -10.60983 -10.08768 -10.05297 -9.75253 -9.73410
-9.55320 -9.12202 -8.64902 -8.35842 -7.17241 -6.42262 -3.17816 0.25253
0.55815 2.21139 2.41190 2.76963 3.14711 3.30012 3.42293 3.55208
3.61125 3.71865 4.02525 4.09990 4.31390 4.41734 4.56131 4.63467
4.79486 4.90604 4.91934 4.99287 5.05304 5.18514 5.27899 5.31048
5.35981 5.44141 5.51859 5.56658 5.69418 5.71182 5.80551 5.83766
6.11488 6.14260 6.31264 6.40047 6.52394 6.64643 6.74913 7.26447
7.64821 7.97717 8.29053 8.97131 9.54575 10.20405 11.05627
Molecular weight = 342.13amu
Principal moments of inertia in cm(-1)
A = 0.027907 B = 0.002338 C = 0.002247
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1003.093827 B =11974.712798 C =12459.028317
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.069 3.931
2 N -0.594 5.594
3 C 0.557 3.443
4 O -0.529 6.529
5 C -0.124 4.124
6 C -0.061 4.061
7 C -0.126 4.126
8 C -0.054 4.054
9 C -0.192 4.192
10 C 0.511 3.489
11 F -0.177 7.177
12 F -0.174 7.174
13 F -0.175 7.175
14 C -0.017 4.017
15 C 0.120 3.880
16 H 0.111 0.889
17 C -0.140 4.140
18 C 0.123 3.877
19 N -0.606 5.606
20 C -0.343 4.343
21 H 0.080 0.920
22 C -0.007 4.007
23 N -0.901 5.901
24 Si 1.032 2.968
25 H -0.298 1.298
26 H -0.277 1.277
27 H -0.295 1.295
28 C 0.135 3.865
29 H 0.062 0.938
30 H 0.071 0.929
31 H 0.083 0.917
32 H 0.149 0.851
33 H 0.143 0.857
34 H 0.142 0.858
35 H 0.143 0.857
36 H 0.071 0.929
37 H 0.071 0.929
38 H 0.029 0.971
39 H 0.046 0.954
40 H 0.265 0.735
41 H 0.030 0.970
42 H 0.045 0.955
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -8.083 26.987 -4.576 28.541
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.073 4.073
2 N -0.326 5.326
3 C 0.345 3.655
4 O -0.406 6.406
5 C -0.127 4.127
6 C -0.079 4.079
7 C -0.144 4.144
8 C -0.072 4.072
9 C -0.194 4.194
10 C 0.457 3.543
11 F -0.158 7.158
12 F -0.155 7.155
13 F -0.156 7.156
14 C -0.035 4.035
15 C 0.017 3.983
16 H 0.129 0.871
17 C -0.178 4.178
18 C -0.002 4.002
19 N -0.334 5.334
20 C -0.469 4.469
21 H 0.098 0.902
22 C -0.210 4.210
23 N -0.540 5.540
24 Si 0.863 3.137
25 H -0.225 1.225
26 H -0.204 1.204
27 H -0.223 1.223
28 C 0.008 3.992
29 H 0.081 0.919
30 H 0.090 0.910
31 H 0.102 0.898
32 H 0.166 0.834
33 H 0.160 0.840
34 H 0.160 0.840
35 H 0.161 0.839
36 H 0.089 0.911
37 H 0.090 0.910
38 H 0.047 0.953
39 H 0.064 0.936
40 H 0.075 0.925
41 H 0.048 0.952
42 H 0.064 0.936
Dipole moment (debyes) X Y Z Total
from point charges -6.813 25.787 -5.645 27.262
hybrid contribution -0.441 1.387 0.990 1.760
sum -7.254 27.174 -4.655 28.508
Atomic orbital electron populations
1.22109 0.79654 1.03841 1.01717 1.47673 1.07049 1.05669 1.72164
1.18182 0.87047 0.83283 0.77022 1.90814 1.13560 1.86964 1.49285
1.19915 0.97287 0.94199 1.01323 1.22034 0.92067 0.99090 0.94732
1.21163 1.01013 0.91834 1.00352 1.21218 0.93382 0.99902 0.92687
1.19886 1.00953 0.93469 1.05048 1.18203 0.75366 0.83361 0.77402
1.93164 1.70612 1.58650 1.93421 1.93243 1.38602 1.93751 1.89922
1.93235 1.96242 1.94222 1.31927 1.20918 0.97455 0.89755 0.95419
1.22646 0.97773 0.80963 0.96947 0.87107 1.22964 1.01593 0.96034
0.97243 1.21874 0.98716 0.93712 0.85947 1.44769 1.83264 1.04908
1.00476 1.19935 1.51841 0.84997 0.90165 0.90197 1.25588 1.00418
0.90730 1.04246 1.70932 1.32090 1.30568 1.20367 0.84482 0.77538
0.74538 0.77098 1.22528 1.20437 1.22325 1.21800 0.97612 0.85033
0.94767 0.91944 0.91037 0.89793 0.83372 0.83952 0.83999 0.83896
0.91063 0.91023 0.95318 0.93603 0.92511 0.95236 0.93631
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.07 0.65 7.45 59.85 0.45 1.09 16
2 N -0.59 -7.84 2.91 -172.45 -0.50 -8.34 16
3 C 0.56 7.76 7.37 -12.33 -0.09 7.67 16
4 O -0.53 -9.40 16.23 5.32 0.09 -9.31 16
5 C -0.12 -1.31 5.17 -104.96 -0.54 -1.85 16
6 C -0.06 -0.47 7.81 -39.19 -0.31 -0.77 16
7 C -0.13 -0.74 10.03 -39.64 -0.40 -1.13 16
8 C -0.05 -0.35 9.43 -39.49 -0.37 -0.73 16
9 C -0.19 -1.66 5.37 -104.68 -0.56 -2.22 16
10 C 0.51 4.55 3.31 36.01 0.12 4.67 16
11 F -0.18 -1.46 15.96 2.25 0.04 -1.43 16
12 F -0.17 -1.74 17.23 2.25 0.04 -1.70 16
13 F -0.17 -1.69 17.24 2.25 0.04 -1.65 16
14 C -0.02 -0.17 9.15 -39.18 -0.36 -0.53 16
15 C 0.12 2.00 3.45 -65.66 -0.23 1.78 16
16 H 0.11 2.07 7.05 -51.93 -0.37 1.71 16
17 C -0.14 -2.29 6.49 -24.90 -0.16 -2.45 16
18 C 0.12 2.62 4.58 -3.06 -0.01 2.60 16
19 N -0.61 -14.54 3.38 -169.93 -0.57 -15.12 16
20 C -0.34 -9.66 10.39 -15.06 -0.16 -9.82 16
21 H 0.08 2.37 8.06 -52.49 -0.42 1.94 16
22 C -0.01 -0.21 5.42 -17.43 -0.09 -0.31 16
23 N -0.90 -27.66 13.70 55.49 0.76 -26.90 16
24 Si 1.03 25.75 25.17 -169.99 -4.28 21.48 16
25 H -0.30 -7.61 7.11 56.52 0.40 -7.21 16
26 H -0.28 -6.25 5.09 56.52 0.29 -5.97 16
27 H -0.30 -7.28 7.11 56.52 0.40 -6.88 16
28 C 0.14 2.60 6.79 -2.41 -0.02 2.59 16
29 H 0.06 0.48 6.39 -51.93 -0.33 0.15 16
30 H 0.07 0.52 6.50 -51.93 -0.34 0.19 16
31 H 0.08 0.83 6.38 -51.93 -0.33 0.49 16
32 H 0.15 0.94 5.23 -52.48 -0.27 0.66 16
33 H 0.14 0.44 8.06 -52.48 -0.42 0.02 16
34 H 0.14 0.66 7.14 -52.49 -0.37 0.28 16
35 H 0.14 1.51 8.00 -52.49 -0.42 1.09 16
36 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16
37 H 0.07 1.03 6.47 -51.93 -0.34 0.69 16
38 H 0.03 0.65 4.72 -51.92 -0.25 0.41 16
39 H 0.05 1.02 6.84 -51.93 -0.36 0.67 16
40 H 0.27 8.02 8.73 -40.82 -0.36 7.66 16
41 H 0.03 0.53 6.97 -51.93 -0.36 0.17 16
42 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16
LS Contribution 346.13 15.07 5.22 5.22
Total: -1.00 -33.35 346.13 -6.60 -39.95
By element:
Atomic # 1 Polarization: 1.92 SS G_CDS: -4.69 Total: -2.77 kcal
Atomic # 6 Polarization: 3.31 SS G_CDS: -2.73 Total: 0.58 kcal
Atomic # 7 Polarization: -50.05 SS G_CDS: -0.32 Total: -50.36 kcal
Atomic # 8 Polarization: -9.40 SS G_CDS: 0.09 Total: -9.31 kcal
Atomic # 9 Polarization: -4.89 SS G_CDS: 0.11 Total: -4.77 kcal
Atomic # 14 Polarization: 25.75 SS G_CDS: -4.28 Total: 21.48 kcal
Total LS contribution 5.22 Total: 5.22 kcal
Total: -33.35 -6.60 -39.95 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001033604915.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -65.154 kcal
(2) G-P(sol) polarization free energy of solvation -33.345 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.500 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.603 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.948 kcal
(6) G-S(sol) free energy of system = (1) + (5) -105.102 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.69 seconds