Wall clock time and date at job start Sat Apr 11 2020 06:33:04
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46507 * 1
3 3 C 1.34770 * 120.00202 * 2 1
4 4 O 1.21554 * 120.00245 * 185.81584 * 3 2 1
5 5 C 1.47850 * 119.99894 * 5.81206 * 3 2 1
6 6 C 1.39598 * 120.14508 * 35.02336 * 5 3 2
7 7 C 1.37930 * 119.85141 * 179.97438 * 6 5 3
8 8 C 1.38379 * 120.14943 * 359.97438 * 7 6 5
9 9 C 1.38339 * 120.29143 * 0.04212 * 8 7 6
10 10 C 1.50702 * 119.92569 * 179.97438 * 9 8 7
11 11 F 1.39892 * 109.47108 * 359.97438 * 10 9 8
12 12 F 1.39895 * 109.46905 * 120.00177 * 10 9 8
13 13 F 1.39896 * 109.46700 * 239.99648 * 10 9 8
14 14 C 1.37977 * 120.14332 * 359.69676 * 9 8 7
15 15 C 1.46504 * 119.99608 * 179.97438 * 2 1 3
16 16 H 1.09001 * 110.91189 * 183.90452 * 15 2 1
17 17 C 1.55148 * 111.00205 * 60.00566 * 15 2 1
18 18 C 1.54328 * 102.94097 * 206.42209 * 17 15 2
19 19 N 1.47020 * 107.27037 * 22.19090 * 18 17 15
20 20 C 1.36938 * 125.64912 * 181.03060 * 19 18 17
21 21 H 1.07997 * 120.00290 * 174.91781 * 20 19 18
22 22 C 1.38818 * 119.99861 * 354.91278 * 20 19 18
23 23 N 1.31620 * 119.99962 * 214.21105 * 22 20 19
24 24 Si 1.86798 * 119.99666 * 34.48526 * 22 20 19
25 25 H 1.48506 * 109.47010 * 173.99086 * 24 22 20
26 26 H 1.48500 * 109.47279 * 293.98997 * 24 22 20
27 27 H 1.48492 * 109.47128 * 53.99301 * 24 22 20
28 28 C 1.47422 * 108.70567 * 1.28699 * 19 18 17
29 29 H 1.09003 * 109.46818 * 274.70810 * 1 2 3
30 30 H 1.09002 * 109.47046 * 34.70536 * 1 2 3
31 31 H 1.08990 * 109.47014 * 154.70646 * 1 2 3
32 32 H 1.08004 * 120.06877 * 359.95708 * 6 5 3
33 33 H 1.08003 * 119.92776 * 180.02562 * 7 6 5
34 34 H 1.07998 * 119.85572 * 180.02562 * 8 7 6
35 35 H 1.08002 * 120.07490 * 180.27032 * 14 9 8
36 36 H 1.09000 * 110.72708 * 88.05595 * 17 15 2
37 37 H 1.09004 * 110.87523 * 324.84985 * 17 15 2
38 38 H 1.09008 * 109.87957 * 262.77457 * 18 17 15
39 39 H 1.08999 * 109.88366 * 141.61049 * 18 17 15
40 40 H 0.97001 * 119.99783 * 5.28128 * 23 22 20
41 41 H 1.08999 * 110.36405 * 94.48154 * 28 19 18
42 42 H 1.08990 * 110.37151 * 216.80772 * 28 19 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4651 0.0000 0.0000
3 6 2.1390 1.1671 0.0000
4 8 3.3498 1.1698 -0.1067
5 6 1.4054 2.4443 0.1297
6 6 0.2644 2.5192 0.9305
7 6 -0.4149 3.7139 1.0475
8 6 0.0325 4.8367 0.3738
9 6 1.1623 4.7692 -0.4217
10 6 1.6419 5.9970 -1.1522
11 9 0.7887 7.0695 -0.8716
12 9 2.9395 6.3110 -0.7344
13 9 1.6424 5.7498 -2.5291
14 6 1.8542 3.5817 -0.5431
15 6 2.1975 -1.2688 0.0006
16 1 3.2718 -1.0979 0.0698
17 6 1.8484 -2.1129 -1.2535
18 6 2.1063 -3.5588 -0.7796
19 7 2.0264 -3.5578 0.6884
20 6 2.2161 -4.6453 1.4988
21 1 2.2169 -4.5253 2.5721
22 6 2.4073 -5.9018 0.9407
23 7 1.9411 -6.9708 1.5509
24 14 3.3329 -6.0762 -0.6725
25 1 3.5273 -7.5163 -0.9785
26 1 2.5513 -5.4396 -1.7629
27 1 4.6558 -5.4115 -0.5584
28 6 1.7020 -2.1936 1.1433
29 1 -0.3633 0.0844 1.0242
30 1 -0.3633 0.8449 -0.5851
31 1 -0.3633 -0.9291 -0.4390
32 1 -0.0857 1.6436 1.4569
33 1 -1.2976 3.7733 1.6670
34 1 -0.5029 5.7698 0.4691
35 1 2.7386 3.5313 -1.1610
36 1 2.5043 -1.8570 -2.0856
37 1 0.8033 -1.9794 -1.5330
38 1 3.0981 -3.8815 -1.0967
39 1 1.3482 -4.2248 -1.1917
40 1 1.3986 -6.8756 2.3493
41 1 0.6263 -2.0858 1.2822
42 1 2.2296 -1.9671 2.0697
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001033604915.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:33:04
Heat of formation + Delta-G solvation = -126.359961 kcal
Electronic energy + Delta-G solvation = -29705.465864 eV
Core-core repulsion = 25043.498738 eV
Total energy + Delta-G solvation = -4661.967126 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 342.130 amu
Computer time = 1.19 seconds
Orbital eigenvalues (eV)
-51.23914 -48.75186 -48.70945 -41.75707 -40.03875 -38.98129 -36.54655 -34.55816
-33.24597 -32.44378 -31.21453 -29.76492 -28.14865 -27.06870 -26.17221 -24.74999
-23.26619 -22.66418 -22.02549 -20.67066 -19.56343 -19.55469 -19.49487 -19.38284
-18.14205 -17.50214 -17.45844 -16.92063 -16.66516 -16.04086 -15.69113 -15.61508
-15.48216 -15.37819 -15.17295 -15.13822 -15.02319 -14.86153 -14.79627 -14.48185
-14.40256 -14.12013 -13.88608 -13.82805 -13.65155 -13.17274 -13.06479 -12.98212
-12.80560 -12.49799 -12.38817 -12.21717 -11.86972 -11.56649 -11.18642 -10.99057
-10.46722 -10.35736 -10.21717 -9.78243 -9.17585 -8.69394 -5.37309 -0.38333
-0.07568 1.43128 1.46769 1.53288 1.57401 1.71949 1.77694 2.42538
2.55711 2.62970 2.91876 2.95154 3.28641 3.33502 3.39184 3.70967
3.71951 3.76550 3.88921 3.96571 4.02679 4.17505 4.23310 4.31326
4.37691 4.43376 4.60204 4.69765 4.71412 4.81085 4.84479 4.91262
4.97805 5.05616 5.11474 5.14978 5.16933 5.39450 5.58020 5.61095
6.08384 6.23832 6.79865 6.93295 7.46058 8.11303 8.79622
Molecular weight = 342.13amu
Principal moments of inertia in cm(-1)
A = 0.027907 B = 0.002338 C = 0.002247
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1003.093827 B =11974.712798 C =12459.028317
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.060 3.940
2 N -0.590 5.590
3 C 0.555 3.445
4 O -0.580 6.580
5 C -0.140 4.140
6 C -0.054 4.054
7 C -0.110 4.110
8 C -0.044 4.044
9 C -0.198 4.198
10 C 0.512 3.488
11 F -0.171 7.171
12 F -0.184 7.184
13 F -0.182 7.182
14 C -0.031 4.031
15 C 0.134 3.866
16 H 0.085 0.915
17 C -0.124 4.124
18 C 0.114 3.886
19 N -0.628 5.628
20 C -0.335 4.335
21 H 0.051 0.949
22 C -0.061 4.061
23 N -0.937 5.937
24 Si 1.072 2.928
25 H -0.308 1.308
26 H -0.237 1.237
27 H -0.294 1.294
28 C 0.135 3.865
29 H 0.085 0.915
30 H 0.097 0.903
31 H 0.084 0.916
32 H 0.165 0.835
33 H 0.182 0.818
34 H 0.167 0.833
35 H 0.126 0.874
36 H 0.087 0.913
37 H 0.101 0.899
38 H 0.020 0.980
39 H 0.041 0.959
40 H 0.253 0.747
41 H 0.053 0.947
42 H 0.030 0.970
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -10.624 29.649 -5.505 31.973
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.081 4.081
2 N -0.321 5.321
3 C 0.345 3.655
4 O -0.460 6.460
5 C -0.144 4.144
6 C -0.072 4.072
7 C -0.127 4.127
8 C -0.062 4.062
9 C -0.200 4.200
10 C 0.458 3.542
11 F -0.152 7.152
12 F -0.165 7.165
13 F -0.163 7.163
14 C -0.050 4.050
15 C 0.029 3.971
16 H 0.103 0.897
17 C -0.163 4.163
18 C -0.011 4.011
19 N -0.356 5.356
20 C -0.462 4.462
21 H 0.069 0.931
22 C -0.257 4.257
23 N -0.578 5.578
24 Si 0.899 3.101
25 H -0.236 1.236
26 H -0.161 1.161
27 H -0.221 1.221
28 C 0.009 3.991
29 H 0.103 0.897
30 H 0.115 0.885
31 H 0.102 0.898
32 H 0.182 0.818
33 H 0.200 0.800
34 H 0.185 0.815
35 H 0.144 0.856
36 H 0.105 0.895
37 H 0.119 0.881
38 H 0.038 0.962
39 H 0.059 0.941
40 H 0.062 0.938
41 H 0.071 0.929
42 H 0.048 0.952
Dipole moment (debyes) X Y Z Total
from point charges -9.404 28.512 -6.586 30.737
hybrid contribution 0.291 0.701 1.407 1.599
sum -9.113 29.213 -5.179 31.037
Atomic orbital electron populations
1.22453 0.76839 1.05034 1.03755 1.47642 1.08581 1.04119 1.71724
1.18733 0.86625 0.84398 0.75747 1.90784 1.15917 1.87725 1.51621
1.19639 0.98760 0.92332 1.03623 1.22236 0.90766 1.00608 0.93603
1.21580 1.01379 0.90353 0.99420 1.21610 0.92159 1.01344 0.91087
1.19887 1.01787 0.92484 1.05826 1.18269 0.75058 0.83750 0.77151
1.93171 1.70289 1.58421 1.93342 1.93223 1.39458 1.93866 1.89991
1.93220 1.96248 1.94290 1.32543 1.20819 0.97508 0.90609 0.96038
1.22124 0.96786 0.82267 0.95901 0.89727 1.22897 1.03843 0.92363
0.97183 1.21992 0.97920 0.96955 0.84241 1.44815 1.83369 1.05699
1.01710 1.19816 1.50201 0.86687 0.89536 0.93146 1.26727 1.01136
0.90708 1.07161 1.71026 1.34231 1.31550 1.21039 0.83967 0.76795
0.74135 0.75216 1.23614 1.16095 1.22150 1.21915 0.98564 0.83477
0.95132 0.89720 0.88457 0.89783 0.81760 0.80047 0.81518 0.85648
0.89456 0.88097 0.96218 0.94146 0.93797 0.92920 0.95170
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.06 0.88 7.45 127.77 0.95 1.83 16
2 N -0.59 -14.34 2.91 -817.80 -2.38 -16.72 16
3 C 0.56 14.97 7.37 86.79 0.64 15.61 16
4 O -0.58 -21.09 16.23 -3.89 -0.06 -21.15 16
5 C -0.14 -2.70 5.17 -20.09 -0.10 -2.80 16
6 C -0.05 -0.61 7.81 22.53 0.18 -0.43 16
7 C -0.11 -0.72 10.03 22.23 0.22 -0.50 16
8 C -0.04 -0.40 9.43 22.33 0.21 -0.19 16
9 C -0.20 -3.02 5.37 -19.90 -0.11 -3.12 16
10 C 0.51 8.43 3.31 71.24 0.24 8.67 16
11 F -0.17 -2.43 15.96 44.97 0.72 -1.72 16
12 F -0.18 -3.60 17.23 44.97 0.77 -2.83 16
13 F -0.18 -3.36 17.24 44.97 0.78 -2.58 16
14 C -0.03 -0.60 9.15 22.53 0.21 -0.39 16
15 C 0.13 4.30 3.45 46.46 0.16 4.46 16
16 H 0.08 3.20 7.05 -2.39 -0.02 3.18 16
17 C -0.12 -3.75 6.49 31.78 0.21 -3.55 16
18 C 0.11 4.65 4.58 86.73 0.40 5.04 16
19 N -0.63 -29.95 3.38 -691.55 -2.34 -32.28 16
20 C -0.33 -19.26 10.39 84.03 0.87 -18.39 16
21 H 0.05 3.12 8.06 -2.91 -0.02 3.10 16
22 C -0.06 -3.59 5.42 84.86 0.46 -3.13 16
23 N -0.94 -59.26 13.70 21.65 0.30 -58.96 16
24 Si 1.07 52.38 25.17 68.60 1.73 54.11 16
25 H -0.31 -15.46 7.11 99.48 0.71 -14.75 16
26 H -0.24 -9.96 5.09 99.48 0.51 -9.45 16
27 H -0.29 -14.14 7.11 99.48 0.71 -13.43 16
28 C 0.14 5.10 6.79 86.93 0.59 5.69 16
29 H 0.08 0.90 6.39 -2.39 -0.02 0.88 16
30 H 0.10 0.98 6.50 -2.39 -0.02 0.96 16
31 H 0.08 1.29 6.38 -2.39 -0.02 1.27 16
32 H 0.17 1.28 5.23 -2.91 -0.02 1.27 16
33 H 0.18 -0.13 8.06 -2.91 -0.02 -0.15 16
34 H 0.17 0.71 7.14 -2.91 -0.02 0.69 16
35 H 0.13 2.79 8.00 -2.91 -0.02 2.77 16
36 H 0.09 2.41 8.14 -2.39 -0.02 2.39 16
37 H 0.10 2.47 6.47 -2.38 -0.02 2.46 16
38 H 0.02 0.86 4.72 -2.38 -0.01 0.85 16
39 H 0.04 1.71 6.84 -2.39 -0.02 1.69 16
40 H 0.25 15.98 8.73 -92.71 -0.81 15.17 16
41 H 0.05 1.77 6.97 -2.39 -0.02 1.75 16
42 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16
Total: -1.00 -76.95 346.13 5.48 -71.48
By element:
Atomic # 1 Polarization: 1.00 SS G_CDS: 0.84 Total: 1.85 kcal
Atomic # 6 Polarization: 3.69 SS G_CDS: 5.12 Total: 8.81 kcal
Atomic # 7 Polarization: -103.54 SS G_CDS: -4.42 Total: -107.96 kcal
Atomic # 8 Polarization: -21.09 SS G_CDS: -0.06 Total: -21.15 kcal
Atomic # 9 Polarization: -9.39 SS G_CDS: 2.27 Total: -7.13 kcal
Atomic # 14 Polarization: 52.38 SS G_CDS: 1.73 Total: 54.11 kcal
Total: -76.95 5.48 -71.48 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001033604915.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -54.885 kcal
(2) G-P(sol) polarization free energy of solvation -76.950 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.835 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.475 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.475 kcal
(6) G-S(sol) free energy of system = (1) + (5) -126.360 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.19 seconds