Wall clock time and date at job start Sat Apr 11 2020 06:32:27
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46501 * 1
3 3 C 1.35638 * 124.93794 * 2 1
4 4 C 1.35464 * 107.13346 * 179.75081 * 3 2 1
5 5 Cl 1.73596 * 127.23972 * 180.25693 * 4 3 2
6 6 C 1.41546 * 105.52032 * 0.41231 * 4 3 2
7 7 C 1.47666 * 126.46144 * 179.84124 * 6 4 3
8 8 O 1.21581 * 120.00240 * 353.96283 * 7 6 4
9 9 N 1.34775 * 120.00308 * 173.95677 * 7 6 4
10 10 C 1.46925 * 120.62846 * 354.08335 * 9 7 6
11 11 C 1.53193 * 108.77728 * 126.36667 * 10 9 7
12 12 C 1.53038 * 109.33710 * 54.62075 * 11 10 9
13 13 C 1.53043 * 109.53750 * 298.68131 * 12 11 10
14 14 C 1.52999 * 109.52288 * 181.30301 * 13 12 11
15 15 O 1.42904 * 109.47251 * 180.11179 * 14 13 12
16 16 N 1.46506 * 109.47031 * 301.36612 * 13 12 11
17 17 C 1.36936 * 119.99663 * 179.85411 * 16 13 12
18 18 H 1.07994 * 120.00282 * 0.02562 * 17 16 13
19 19 C 1.38811 * 119.99886 * 180.02562 * 17 16 13
20 20 N 1.31624 * 120.00063 * 0.02562 * 19 17 16
21 21 Si 1.86795 * 120.00094 * 179.97438 * 19 17 16
22 22 H 1.48506 * 109.46971 * 90.00273 * 21 19 17
23 23 H 1.48506 * 109.47276 * 209.99786 * 21 19 17
24 24 H 1.48500 * 109.47350 * 330.00040 * 21 19 17
25 25 C 1.46924 * 120.63435 * 174.05470 * 9 7 6
26 26 N 1.28471 * 124.93139 * 180.02562 * 2 1 3
27 27 H 1.09001 * 109.46940 * 270.00049 * 1 2 3
28 28 H 1.08997 * 109.46714 * 29.99275 * 1 2 3
29 29 H 1.08997 * 109.47445 * 150.00276 * 1 2 3
30 30 H 1.08002 * 126.43380 * 0.02566 * 3 2 1
31 31 H 1.08997 * 109.58877 * 6.57945 * 10 9 7
32 32 H 1.09009 * 109.70156 * 246.22416 * 10 9 7
33 33 H 1.09004 * 109.49553 * 174.58526 * 11 10 9
34 34 H 1.08996 * 109.49840 * 294.65108 * 11 10 9
35 35 H 1.08995 * 109.46511 * 58.67231 * 12 11 10
36 36 H 1.09002 * 109.46018 * 178.63159 * 12 11 10
37 37 H 1.08996 * 109.47490 * 300.11705 * 14 13 12
38 38 H 1.09003 * 109.46959 * 60.11674 * 14 13 12
39 39 H 0.96699 * 114.00155 * 179.97438 * 15 14 13
40 40 H 0.96992 * 119.99803 * 359.85655 * 16 13 12
41 41 H 0.96993 * 120.00062 * 179.97438 * 20 19 17
42 42 H 1.08997 * 109.58651 * 353.42150 * 25 9 7
43 43 H 1.08998 * 109.58715 * 113.70231 * 25 9 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.2418 1.1119 0.0000
4 6 3.5315 0.6977 0.0056
5 17 4.9543 1.6923 0.0144
6 6 3.4752 -0.7166 -0.0009
7 6 4.6269 -1.6408 -0.0015
8 8 5.7567 -1.2041 -0.1069
9 7 4.4258 -2.9683 0.1148
10 6 3.0813 -3.5020 0.3724
11 6 2.7550 -4.5523 -0.6939
12 6 3.8585 -5.6125 -0.7154
13 6 5.1927 -4.9552 -1.0762
14 6 6.2896 -6.0205 -1.1294
15 8 7.5353 -5.4053 -1.4637
16 7 5.0788 -4.3049 -2.3840
17 6 6.1539 -3.6443 -2.9161
18 1 7.0858 -3.6031 -2.3718
19 6 6.0459 -3.0277 -4.1550
20 7 4.9100 -3.0775 -4.8181
21 14 7.5122 -2.1260 -4.8805
22 1 8.3183 -3.0686 -5.6973
23 1 7.0335 -1.0123 -5.7383
24 1 8.3504 -1.5804 -3.7829
25 6 5.5466 -3.9095 -0.0142
26 7 2.2006 -1.0533 -0.0005
27 1 -0.3633 0.0000 1.0277
28 1 -0.3633 0.8900 -0.5137
29 1 -0.3634 -0.8900 -0.5138
30 1 1.8968 2.1354 0.0004
31 1 2.3518 -2.6936 0.3242
32 1 3.0517 -3.9625 1.3600
33 1 1.8011 -5.0248 -0.4593
34 1 2.6927 -4.0722 -1.6704
35 1 3.9366 -6.0754 0.2682
36 1 3.6161 -6.3740 -1.4567
37 1 6.3731 -6.5049 -0.1565
38 1 6.0373 -6.7643 -1.8852
39 1 8.2778 -6.0228 -1.5149
40 1 4.2420 -4.3422 -2.8729
41 1 4.8345 -2.6463 -5.6837
42 1 6.4438 -3.3699 -0.3175
43 1 5.7222 -4.4019 0.9422
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001755083311.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:32:27
Heat of formation + Delta-G solvation = 37.520201 kcal
Electronic energy + Delta-G solvation = -29698.824417 eV
Core-core repulsion = 25615.680310 eV
Total energy + Delta-G solvation = -4083.144107 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 342.125 amu
Computer time = 0.46 seconds
Orbital eigenvalues (eV)
-42.64702 -39.50499 -37.51903 -36.27068 -35.60419 -33.83155 -33.26873 -32.09517
-30.95995 -30.57303 -28.55105 -27.65709 -25.31522 -25.09247 -23.39300 -22.31303
-21.69131 -21.30816 -19.51536 -18.27835 -17.39087 -17.06282 -16.50081 -16.30968
-16.09341 -15.39892 -14.84117 -14.55138 -14.32906 -14.09431 -13.86448 -13.63386
-13.47601 -13.18787 -13.12609 -13.01358 -12.79826 -12.60154 -12.09515 -11.95198
-11.68436 -11.57642 -11.49203 -10.92276 -10.62377 -10.60508 -10.51637 -10.46063
-10.04514 -9.79752 -9.61631 -9.46397 -9.30454 -9.18699 -8.89514 -8.68337
-8.67117 -7.86402 -6.70348 -5.47566 -2.72670 1.66216 1.97394 2.06267
2.76254 3.58889 3.64970 3.70067 3.77639 3.94662 4.36002 4.62445
4.81415 4.85064 4.87127 4.92258 5.10469 5.22994 5.39986 5.40589
5.44123 5.58781 5.63296 5.73030 5.86361 5.94340 5.98576 5.99916
6.15768 6.20513 6.24723 6.33688 6.41505 6.52759 6.73650 6.76297
6.94065 7.03243 7.32092 7.81793 8.12521 8.25539 8.45467 8.70603
8.87263 9.84257 10.32696 10.68404 11.76120
Molecular weight = 342.12amu
Principal moments of inertia in cm(-1)
A = 0.010124 B = 0.005356 C = 0.004390
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2764.930706 B = 5226.272464 C = 6376.754433
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.089 3.911
2 N -0.289 5.289
3 C -0.004 4.004
4 C -0.103 4.103
5 Cl -0.011 7.011
6 C 0.024 3.976
7 C 0.602 3.398
8 O -0.511 6.511
9 N -0.579 5.579
10 C 0.078 3.922
11 C -0.126 4.126
12 C -0.116 4.116
13 C 0.189 3.811
14 C 0.077 3.923
15 O -0.540 6.540
16 N -0.702 5.702
17 C -0.196 4.196
18 H 0.092 0.908
19 C -0.024 4.024
20 N -0.946 5.946
21 Si 0.900 3.100
22 H -0.296 1.296
23 H -0.298 1.298
24 H -0.281 1.281
25 C 0.113 3.887
26 N -0.248 5.248
27 H 0.085 0.915
28 H 0.096 0.904
29 H 0.099 0.901
30 H 0.189 0.811
31 H 0.129 0.871
32 H 0.052 0.948
33 H 0.062 0.938
34 H 0.078 0.922
35 H 0.060 0.940
36 H 0.064 0.936
37 H 0.023 0.977
38 H 0.039 0.961
39 H 0.353 0.647
40 H 0.381 0.619
41 H 0.247 0.753
42 H 0.104 0.896
43 H 0.045 0.955
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -11.843 2.232 14.334 18.727
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.051 4.051
2 N -0.076 5.076
3 C -0.149 4.149
4 C -0.140 4.140
5 Cl 0.018 6.982
6 C -0.138 4.138
7 C 0.386 3.614
8 O -0.383 6.383
9 N -0.311 5.311
10 C -0.046 4.046
11 C -0.164 4.164
12 C -0.154 4.154
13 C 0.095 3.905
14 C -0.004 4.004
15 O -0.342 6.342
16 N -0.342 5.342
17 C -0.328 4.328
18 H 0.109 0.891
19 C -0.217 4.217
20 N -0.598 5.598
21 Si 0.733 3.267
22 H -0.225 1.225
23 H -0.225 1.225
24 H -0.206 1.206
25 C -0.011 4.011
26 N -0.083 5.083
27 H 0.104 0.896
28 H 0.114 0.886
29 H 0.118 0.882
30 H 0.206 0.794
31 H 0.146 0.854
32 H 0.070 0.930
33 H 0.081 0.919
34 H 0.097 0.903
35 H 0.078 0.922
36 H 0.083 0.917
37 H 0.041 0.959
38 H 0.057 0.943
39 H 0.198 0.802
40 H 0.216 0.784
41 H 0.057 0.943
42 H 0.122 0.878
43 H 0.063 0.937
Dipole moment (debyes) X Y Z Total
from point charges -12.180 2.298 14.220 18.863
hybrid contribution 1.243 0.643 -0.834 1.629
sum -10.937 2.941 13.386 17.534
Atomic orbital electron populations
1.22197 0.72731 1.05797 1.04369 1.45546 1.07802 1.02957 1.51301
1.22536 0.89435 0.94049 1.08832 1.20804 0.89255 0.91287 1.12644
1.98358 1.35823 1.66933 1.97110 1.22154 0.91198 0.92625 1.07781
1.16692 0.86120 0.81332 0.77251 1.90818 1.22244 1.76247 1.49031
1.47506 1.09184 1.04733 1.69686 1.22524 0.85508 0.99657 0.96888
1.21788 0.97249 0.96457 1.00915 1.21639 0.95026 0.97918 1.00818
1.19951 0.91180 0.90899 0.88475 1.22750 0.85928 0.95710 0.96048
1.86887 1.17263 1.36806 1.93286 1.42416 1.13888 1.62453 1.15476
1.19540 0.91750 1.22252 0.99210 0.89053 1.24644 0.96765 1.02248
0.98065 1.69664 1.24335 1.50710 1.15053 0.86234 0.82615 0.79119
0.78725 1.22451 1.22492 1.20618 1.22138 0.90406 0.91668 0.96921
1.73306 1.02343 1.12332 1.20297 0.89633 0.88568 0.88184 0.79447
0.85415 0.93015 0.91892 0.90302 0.92162 0.91733 0.95862 0.94255
0.80227 0.78387 0.94319 0.87797 0.93678
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.09 0.53 11.32 59.85 0.68 1.21 16
2 N -0.29 -3.41 3.72 -67.94 -0.25 -3.67 16
3 C 0.00 -0.05 11.49 -16.86 -0.19 -0.25 16
4 C -0.10 -1.71 6.80 -39.31 -0.27 -1.98 16
5 Cl -0.01 -0.18 28.20 -51.86 -1.46 -1.65 16
6 C 0.02 0.45 6.88 -82.76 -0.57 -0.12 16
7 C 0.60 13.23 7.69 -12.41 -0.10 13.14 16
8 O -0.51 -12.88 15.34 5.29 0.08 -12.80 16
9 N -0.58 -11.48 2.89 -173.95 -0.50 -11.98 16
10 C 0.08 1.25 6.33 -3.71 -0.02 1.23 16
11 C -0.13 -1.98 5.91 -26.61 -0.16 -2.14 16
12 C -0.12 -1.86 4.76 -26.69 -0.13 -1.98 16
13 C 0.19 3.75 0.68 -131.70 -0.09 3.66 16
14 C 0.08 1.39 6.08 37.16 0.23 1.61 16
15 O -0.54 -10.69 10.11 -35.23 -0.36 -11.05 16
16 N -0.70 -17.66 4.75 -47.12 -0.22 -17.89 16
17 C -0.20 -5.67 8.21 -15.06 -0.12 -5.80 16
18 H 0.09 2.72 5.28 -52.49 -0.28 2.44 16
19 C -0.02 -0.73 5.50 -17.43 -0.10 -0.83 16
20 N -0.95 -30.01 13.06 55.49 0.72 -29.28 16
21 Si 0.90 24.99 29.55 -169.99 -5.02 19.97 16
22 H -0.30 -8.08 7.11 56.52 0.40 -7.67 16
23 H -0.30 -8.36 7.11 56.52 0.40 -7.96 16
24 H -0.28 -7.85 7.11 56.52 0.40 -7.45 16
25 C 0.11 2.30 4.83 -3.72 -0.02 2.28 16
26 N -0.25 -3.88 8.35 33.42 0.28 -3.60 16
27 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16
28 H 0.10 0.33 8.13 -51.93 -0.42 -0.10 16
29 H 0.10 0.58 8.14 -51.93 -0.42 0.15 16
30 H 0.19 1.44 8.06 -52.49 -0.42 1.02 16
31 H 0.13 2.00 3.73 -112.04 -0.42 1.59 16
32 H 0.05 0.71 8.14 -51.92 -0.42 0.29 16
33 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16
34 H 0.08 1.53 6.75 -51.93 -0.35 1.18 16
35 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16
36 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16
37 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16
38 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16
39 H 0.35 5.17 9.12 45.56 0.42 5.58 16
40 H 0.38 10.30 6.43 -40.82 -0.26 10.04 16
41 H 0.25 7.73 8.31 -40.82 -0.34 7.39 16
42 H 0.10 2.55 5.73 -51.93 -0.30 2.25 16
43 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16
LS Contribution 358.59 15.07 5.40 5.40
Total: -1.00 -38.74 358.59 -7.17 -45.90
By element:
Atomic # 1 Polarization: 15.60 SS G_CDS: -4.98 Total: 10.62 kcal
Atomic # 6 Polarization: 10.88 SS G_CDS: -0.86 Total: 10.02 kcal
Atomic # 7 Polarization: -66.44 SS G_CDS: 0.02 Total: -66.42 kcal
Atomic # 8 Polarization: -23.58 SS G_CDS: -0.27 Total: -23.85 kcal
Atomic # 14 Polarization: 24.99 SS G_CDS: -5.02 Total: 19.97 kcal
Atomic # 17 Polarization: -0.18 SS G_CDS: -1.46 Total: -1.65 kcal
Total LS contribution 5.40 Total: 5.40 kcal
Total: -38.74 -7.17 -45.90 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001755083311.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 83.424 kcal
(2) G-P(sol) polarization free energy of solvation -38.738 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.685 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.165 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.903 kcal
(6) G-S(sol) free energy of system = (1) + (5) 37.520 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.46 seconds