Wall clock time and date at job start Sat Apr 11 2020 06:32:26
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46501 * 1
3 3 C 1.35638 * 124.93794 * 2 1
4 4 C 1.35464 * 107.13346 * 179.75081 * 3 2 1
5 5 Cl 1.73596 * 127.23972 * 180.25693 * 4 3 2
6 6 C 1.41546 * 105.52032 * 0.41231 * 4 3 2
7 7 C 1.47666 * 126.46144 * 179.84124 * 6 4 3
8 8 O 1.21581 * 120.00240 * 353.96283 * 7 6 4
9 9 N 1.34775 * 120.00308 * 173.95677 * 7 6 4
10 10 C 1.46925 * 120.62846 * 354.08335 * 9 7 6
11 11 C 1.53193 * 108.77728 * 126.36667 * 10 9 7
12 12 C 1.53038 * 109.33710 * 54.62075 * 11 10 9
13 13 C 1.53043 * 109.53750 * 298.68131 * 12 11 10
14 14 C 1.52999 * 109.52288 * 181.30301 * 13 12 11
15 15 O 1.42904 * 109.47251 * 180.11179 * 14 13 12
16 16 N 1.46506 * 109.47031 * 301.36612 * 13 12 11
17 17 C 1.36936 * 119.99663 * 179.85411 * 16 13 12
18 18 H 1.07994 * 120.00282 * 0.02562 * 17 16 13
19 19 C 1.38811 * 119.99886 * 180.02562 * 17 16 13
20 20 N 1.31624 * 120.00063 * 0.02562 * 19 17 16
21 21 Si 1.86795 * 120.00094 * 179.97438 * 19 17 16
22 22 H 1.48506 * 109.46971 * 90.00273 * 21 19 17
23 23 H 1.48506 * 109.47276 * 209.99786 * 21 19 17
24 24 H 1.48500 * 109.47350 * 330.00040 * 21 19 17
25 25 C 1.46924 * 120.63435 * 174.05470 * 9 7 6
26 26 N 1.28471 * 124.93139 * 180.02562 * 2 1 3
27 27 H 1.09001 * 109.46940 * 270.00049 * 1 2 3
28 28 H 1.08997 * 109.46714 * 29.99275 * 1 2 3
29 29 H 1.08997 * 109.47445 * 150.00276 * 1 2 3
30 30 H 1.08002 * 126.43380 * 0.02566 * 3 2 1
31 31 H 1.08997 * 109.58877 * 6.57945 * 10 9 7
32 32 H 1.09009 * 109.70156 * 246.22416 * 10 9 7
33 33 H 1.09004 * 109.49553 * 174.58526 * 11 10 9
34 34 H 1.08996 * 109.49840 * 294.65108 * 11 10 9
35 35 H 1.08995 * 109.46511 * 58.67231 * 12 11 10
36 36 H 1.09002 * 109.46018 * 178.63159 * 12 11 10
37 37 H 1.08996 * 109.47490 * 300.11705 * 14 13 12
38 38 H 1.09003 * 109.46959 * 60.11674 * 14 13 12
39 39 H 0.96699 * 114.00155 * 179.97438 * 15 14 13
40 40 H 0.96992 * 119.99803 * 359.85655 * 16 13 12
41 41 H 0.96993 * 120.00062 * 179.97438 * 20 19 17
42 42 H 1.08997 * 109.58651 * 353.42150 * 25 9 7
43 43 H 1.08998 * 109.58715 * 113.70231 * 25 9 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.2418 1.1119 0.0000
4 6 3.5315 0.6977 0.0056
5 17 4.9543 1.6923 0.0144
6 6 3.4752 -0.7166 -0.0009
7 6 4.6269 -1.6408 -0.0015
8 8 5.7567 -1.2041 -0.1069
9 7 4.4258 -2.9683 0.1148
10 6 3.0813 -3.5020 0.3724
11 6 2.7550 -4.5523 -0.6939
12 6 3.8585 -5.6125 -0.7154
13 6 5.1927 -4.9552 -1.0762
14 6 6.2896 -6.0205 -1.1294
15 8 7.5353 -5.4053 -1.4637
16 7 5.0788 -4.3049 -2.3840
17 6 6.1539 -3.6443 -2.9161
18 1 7.0858 -3.6031 -2.3718
19 6 6.0459 -3.0277 -4.1550
20 7 4.9100 -3.0775 -4.8181
21 14 7.5122 -2.1260 -4.8805
22 1 8.3183 -3.0686 -5.6973
23 1 7.0335 -1.0123 -5.7383
24 1 8.3504 -1.5804 -3.7829
25 6 5.5466 -3.9095 -0.0142
26 7 2.2006 -1.0533 -0.0005
27 1 -0.3633 0.0000 1.0277
28 1 -0.3633 0.8900 -0.5137
29 1 -0.3634 -0.8900 -0.5138
30 1 1.8968 2.1354 0.0004
31 1 2.3518 -2.6936 0.3242
32 1 3.0517 -3.9625 1.3600
33 1 1.8011 -5.0248 -0.4593
34 1 2.6927 -4.0722 -1.6704
35 1 3.9366 -6.0754 0.2682
36 1 3.6161 -6.3740 -1.4567
37 1 6.3731 -6.5049 -0.1565
38 1 6.0373 -6.7643 -1.8852
39 1 8.2778 -6.0228 -1.5149
40 1 4.2420 -4.3422 -2.8729
41 1 4.8345 -2.6463 -5.6837
42 1 6.4438 -3.3699 -0.3175
43 1 5.7222 -4.4019 0.9422
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001755083311.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:32:26
Heat of formation + Delta-G solvation = 6.232313 kcal
Electronic energy + Delta-G solvation = -29700.181162 eV
Core-core repulsion = 25615.680310 eV
Total energy + Delta-G solvation = -4084.500852 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 342.125 amu
Computer time = 0.65 seconds
Orbital eigenvalues (eV)
-43.74434 -41.02493 -39.11736 -37.51298 -37.10052 -35.57122 -34.44909 -33.76165
-32.51676 -31.76176 -30.42004 -28.70676 -26.67634 -26.44576 -25.53717 -23.57737
-22.94149 -22.46227 -20.89877 -19.82490 -19.21135 -18.34663 -17.80100 -17.76320
-17.33431 -17.00879 -16.42970 -16.00229 -15.70915 -15.65011 -15.53275 -15.05262
-14.89925 -14.66496 -14.41827 -14.23632 -13.82849 -13.61065 -13.56118 -13.45516
-13.18472 -12.91280 -12.87185 -12.79649 -12.69477 -12.39362 -12.08503 -11.86752
-11.83219 -11.40261 -11.28850 -11.20507 -10.94326 -10.61757 -10.54348 -10.31726
-9.84422 -9.43175 -8.77972 -7.80199 -5.00599 0.44872 0.85848 1.00285
1.38626 1.42155 1.51831 1.69851 2.19631 2.44364 2.64420 3.34687
3.41757 3.68655 3.70598 3.86974 3.90347 4.09522 4.15076 4.25483
4.32755 4.37024 4.46777 4.49191 4.57981 4.61552 4.67215 4.75271
4.79507 4.85857 4.93691 4.99341 5.05947 5.17615 5.23163 5.46740
5.55383 5.68762 5.90905 5.93990 6.45049 6.53327 6.77452 7.18549
7.31809 7.53545 8.23271 8.46178 9.44213
Molecular weight = 342.12amu
Principal moments of inertia in cm(-1)
A = 0.010124 B = 0.005356 C = 0.004390
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2764.930706 B = 5226.272464 C = 6376.754433
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.074 3.926
2 N -0.273 5.273
3 C 0.025 3.975
4 C -0.139 4.139
5 Cl -0.029 7.029
6 C -0.021 4.021
7 C 0.585 3.415
8 O -0.565 6.565
9 N -0.582 5.582
10 C 0.074 3.926
11 C -0.119 4.119
12 C -0.110 4.110
13 C 0.175 3.825
14 C 0.077 3.923
15 O -0.574 6.574
16 N -0.708 5.708
17 C -0.166 4.166
18 H 0.081 0.919
19 C -0.090 4.090
20 N -0.976 5.976
21 Si 0.945 3.055
22 H -0.287 1.287
23 H -0.304 1.304
24 H -0.291 1.291
25 C 0.117 3.883
26 N -0.248 5.248
27 H 0.115 0.885
28 H 0.130 0.870
29 H 0.102 0.898
30 H 0.238 0.762
31 H 0.134 0.866
32 H 0.084 0.916
33 H 0.104 0.896
34 H 0.035 0.965
35 H 0.100 0.900
36 H 0.068 0.932
37 H 0.067 0.933
38 H 0.037 0.963
39 H 0.376 0.624
40 H 0.370 0.630
41 H 0.239 0.761
42 H 0.054 0.946
43 H 0.077 0.923
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -14.740 1.354 16.427 22.112
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.063 4.063
2 N -0.060 5.060
3 C -0.120 4.120
4 C -0.177 4.177
5 Cl -0.001 7.001
6 C -0.180 4.180
7 C 0.371 3.629
8 O -0.442 6.442
9 N -0.312 5.312
10 C -0.049 4.049
11 C -0.158 4.158
12 C -0.147 4.147
13 C 0.084 3.916
14 C -0.003 4.003
15 O -0.380 6.380
16 N -0.347 5.347
17 C -0.298 4.298
18 H 0.098 0.902
19 C -0.280 4.280
20 N -0.631 5.631
21 Si 0.778 3.222
22 H -0.215 1.215
23 H -0.231 1.231
24 H -0.217 1.217
25 C -0.008 4.008
26 N -0.085 5.085
27 H 0.133 0.867
28 H 0.148 0.852
29 H 0.121 0.879
30 H 0.254 0.746
31 H 0.150 0.850
32 H 0.102 0.898
33 H 0.122 0.878
34 H 0.054 0.946
35 H 0.118 0.882
36 H 0.087 0.913
37 H 0.085 0.915
38 H 0.056 0.944
39 H 0.223 0.777
40 H 0.203 0.797
41 H 0.048 0.952
42 H 0.072 0.928
43 H 0.095 0.905
Dipole moment (debyes) X Y Z Total
from point charges -15.093 1.344 16.366 22.304
hybrid contribution 2.008 0.879 -1.319 2.558
sum -13.085 2.223 15.048 20.064
Atomic orbital electron populations
1.22806 0.68901 1.07698 1.06930 1.46196 1.09691 1.02028 1.48098
1.23183 0.87583 0.95908 1.05309 1.21124 0.90480 0.90719 1.15338
1.98336 1.37370 1.67027 1.97333 1.21834 0.91548 0.93108 1.11511
1.17307 0.86598 0.82411 0.76551 1.90760 1.24447 1.77348 1.51685
1.47707 1.10521 1.04222 1.68774 1.22804 0.83558 1.00059 0.98442
1.21739 0.99254 0.96232 0.98525 1.21652 0.92370 0.97713 1.03003
1.20426 0.94495 0.91083 0.85584 1.22698 0.84655 0.94618 0.98286
1.86799 1.18738 1.38821 1.93614 1.42521 1.12233 1.62520 1.17453
1.19633 0.92190 1.19905 0.98114 0.90170 1.25179 0.98634 1.04739
0.99451 1.69774 1.25502 1.52710 1.15154 0.85498 0.80684 0.78256
0.77730 1.21476 1.23136 1.21692 1.21988 0.89096 0.91316 0.98370
1.73167 1.01323 1.13758 1.20238 0.86668 0.85186 0.87908 0.74582
0.84990 0.89793 0.87811 0.94644 0.88166 0.91288 0.91468 0.94435
0.77680 0.79684 0.95250 0.92777 0.90498
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.07 0.54 11.32 127.77 1.45 1.98 16
2 N -0.27 -5.61 3.72 -368.87 -1.37 -6.98 16
3 C 0.03 0.55 11.49 83.46 0.96 1.50 16
4 C -0.14 -4.65 6.80 22.44 0.15 -4.49 16
5 Cl -0.03 -1.03 28.20 -2.72 -0.08 -1.11 16
6 C -0.02 -0.81 6.88 42.45 0.29 -0.52 16
7 C 0.58 26.76 7.69 86.73 0.67 27.42 16
8 O -0.57 -30.44 15.34 -3.97 -0.06 -30.50 16
9 N -0.58 -23.09 2.89 -822.53 -2.38 -25.46 16
10 C 0.07 2.20 6.33 86.36 0.55 2.74 16
11 C -0.12 -3.47 5.91 30.67 0.18 -3.29 16
12 C -0.11 -3.16 4.76 30.62 0.15 -3.02 16
13 C 0.18 6.78 0.68 3.68 0.00 6.78 16
14 C 0.08 2.65 6.08 71.98 0.44 3.09 16
15 O -0.57 -22.53 10.11 -148.98 -1.51 -24.04 16
16 N -0.71 -36.29 4.75 -303.00 -1.44 -37.72 16
17 C -0.17 -9.89 8.21 84.03 0.69 -9.20 16
18 H 0.08 4.97 5.28 -2.91 -0.02 4.95 16
19 C -0.09 -5.74 5.50 84.86 0.47 -5.27 16
20 N -0.98 -64.10 13.06 21.65 0.28 -63.82 16
21 Si 0.94 53.46 29.55 68.60 2.03 55.49 16
22 H -0.29 -15.56 7.11 99.48 0.71 -14.86 16
23 H -0.30 -17.31 7.11 99.48 0.71 -16.60 16
24 H -0.29 -16.66 7.11 99.48 0.71 -15.95 16
25 C 0.12 4.74 4.83 86.36 0.42 5.15 16
26 N -0.25 -7.41 8.35 -48.17 -0.40 -7.82 16
27 H 0.12 0.28 8.14 -2.39 -0.02 0.26 16
28 H 0.13 0.16 8.13 -2.39 -0.02 0.14 16
29 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16
30 H 0.24 2.53 8.06 -2.91 -0.02 2.50 16
31 H 0.13 3.90 3.73 -80.15 -0.30 3.60 16
32 H 0.08 1.98 8.14 -2.38 -0.02 1.96 16
33 H 0.10 2.19 8.14 -2.38 -0.02 2.17 16
34 H 0.03 1.35 6.75 -2.39 -0.02 1.34 16
35 H 0.10 2.15 8.14 -2.39 -0.02 2.13 16
36 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16
37 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16
38 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16
39 H 0.38 10.67 9.12 -74.06 -0.68 10.00 16
40 H 0.37 20.51 6.43 -92.71 -0.60 19.91 16
41 H 0.24 15.49 8.31 -92.71 -0.77 14.72 16
42 H 0.05 2.76 5.73 -2.39 -0.01 2.75 16
43 H 0.08 2.58 8.14 -2.39 -0.02 2.56 16
Total: -1.00 -92.79 358.59 1.00 -91.79
By element:
Atomic # 1 Polarization: 27.76 SS G_CDS: -0.48 Total: 27.27 kcal
Atomic # 6 Polarization: 16.49 SS G_CDS: 6.40 Total: 22.90 kcal
Atomic # 7 Polarization: -136.50 SS G_CDS: -5.31 Total: -141.81 kcal
Atomic # 8 Polarization: -52.97 SS G_CDS: -1.57 Total: -54.54 kcal
Atomic # 14 Polarization: 53.46 SS G_CDS: 2.03 Total: 55.49 kcal
Atomic # 17 Polarization: -1.03 SS G_CDS: -0.08 Total: -1.11 kcal
Total: -92.79 1.00 -91.79 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001755083311.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 98.024 kcal
(2) G-P(sol) polarization free energy of solvation -92.793 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.232 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.000 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.792 kcal
(6) G-S(sol) free energy of system = (1) + (5) 6.232 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.65 seconds