Wall clock time and date at job start Sat Apr 11 2020 06:32:40
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31515 * 1
3 3 Si 1.86800 * 119.99841 * 2 1
4 4 H 1.48500 * 109.46936 * 274.98437 * 3 2 1
5 5 H 1.48496 * 109.47595 * 34.98433 * 3 2 1
6 6 H 1.48497 * 109.47002 * 154.98464 * 3 2 1
7 7 C 1.37875 * 120.00139 * 179.97438 * 2 1 3
8 8 H 1.07998 * 120.00250 * 186.13193 * 7 2 1
9 9 C 1.50701 * 119.99870 * 6.14377 * 7 2 1
10 10 O 1.42905 * 110.77290 * 294.98373 * 9 7 2
11 11 C 1.55152 * 110.72521 * 58.22194 * 9 7 2
12 12 C 1.54906 * 101.58338 * 153.86908 * 11 9 7
13 13 N 1.47432 * 104.82997 * 322.98968 * 12 11 9
14 14 C 1.34771 * 125.64731 * 204.08905 * 13 12 11
15 15 O 1.21285 * 119.99969 * 180.02562 * 14 13 12
16 16 C 1.50701 * 120.00417 * 0.02857 * 14 13 12
17 17 N 1.46500 * 109.47502 * 179.97438 * 16 14 13
18 18 C 1.36539 * 118.85937 * 90.00212 * 17 16 14
19 19 C 1.34290 * 122.41170 * 179.74251 * 18 17 16
20 20 C 1.46369 * 119.41811 * 359.97438 * 19 18 17
21 21 C 1.39574 * 122.03896 * 180.02562 * 20 19 18
22 22 C 1.36727 * 119.49065 * 179.97438 * 21 20 19
23 23 C 1.38902 * 120.88631 * 0.02562 * 22 21 20
24 24 C 1.36747 * 120.89023 * 359.97438 * 23 22 21
25 25 C 1.39467 * 119.50417 * 0.02562 * 24 23 22
26 26 C 1.34779 * 118.86273 * 269.73481 * 17 16 14
27 27 O 1.21789 * 120.39312 * 0.29899 * 26 17 16
28 28 C 1.47023 * 108.70206 * 24.36081 * 13 12 11
29 29 H 0.97005 * 119.99772 * 0.02562 * 1 2 3
30 30 H 0.96698 * 114.00092 * 61.79245 * 10 9 7
31 31 H 1.08999 * 111.00335 * 35.79156 * 11 9 7
32 32 H 1.09001 * 111.00494 * 271.94307 * 11 9 7
33 33 H 1.09001 * 110.37184 * 204.15635 * 12 11 9
34 34 H 1.08998 * 110.46359 * 81.87653 * 12 11 9
35 35 H 1.08999 * 109.46756 * 59.99488 * 16 14 13
36 36 H 1.09004 * 109.47218 * 300.00116 * 16 14 13
37 37 H 1.08004 * 118.79768 * 359.71639 * 18 17 16
38 38 H 1.08008 * 120.29040 * 179.97438 * 19 18 17
39 39 H 1.07998 * 120.26039 * 359.97438 * 21 20 19
40 40 H 1.07998 * 119.55762 * 179.97438 * 22 21 20
41 41 H 1.08000 * 119.55884 * 180.02562 * 23 22 21
42 42 H 1.07999 * 120.25427 * 180.02562 * 24 23 22
43 43 H 1.08996 * 109.88290 * 118.12701 * 28 13 12
44 44 H 1.09000 * 109.87596 * 239.29287 * 28 13 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2491 1.6178 0.0000
4 1 2.3912 2.1072 -1.3948
5 1 1.5033 2.6200 0.8027
6 1 3.5953 1.4121 0.5920
7 6 2.0046 -1.1940 0.0005
8 1 3.0799 -1.1967 0.1004
9 6 1.2575 -2.4954 -0.1386
10 8 0.4067 -2.7144 0.9885
11 6 0.4398 -2.5210 -1.4568
12 6 0.3487 -4.0417 -1.7370
13 7 1.6531 -4.5824 -1.3127
14 6 2.2143 -5.7225 -1.7614
15 8 3.2964 -6.0725 -1.3402
16 6 1.4973 -6.5626 -2.7868
17 7 2.3088 -7.7393 -3.1080
18 6 2.1358 -8.8789 -2.3762
19 6 2.8372 -9.9995 -2.6123
20 6 3.8266 -10.0144 -3.6910
21 6 4.5852 -11.1487 -3.9842
22 6 5.4948 -11.1050 -5.0040
23 6 5.6737 -9.9475 -5.7507
24 6 4.9444 -8.8214 -5.4858
25 6 4.0091 -8.8364 -4.4514
26 6 3.1965 -7.6611 -4.1191
27 8 3.3231 -6.6266 -4.7493
28 6 2.2371 -3.6751 -0.3140
29 1 -0.4850 0.8401 -0.0004
30 1 -0.2792 -2.0421 1.1000
31 1 0.9726 -2.0074 -2.2571
32 1 -0.5509 -2.0907 -1.3104
33 1 0.1908 -4.2229 -2.8002
34 1 -0.4555 -4.4893 -1.1531
35 1 1.3369 -5.9746 -3.6904
36 1 0.5354 -6.8826 -2.3860
37 1 1.4084 -8.8792 -1.5778
38 1 2.6728 -10.8819 -2.0117
39 1 4.4548 -12.0541 -3.4100
40 1 6.0826 -11.9819 -5.2316
41 1 6.3979 -9.9368 -6.5519
42 1 5.0916 -7.9271 -6.0732
43 1 2.3635 -4.1987 0.6335
44 1 3.1999 -3.3056 -0.6672
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000592849858.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:32:40
Heat of formation + Delta-G solvation = -65.158099 kcal
Electronic energy + Delta-G solvation = -29336.638577 eV
Core-core repulsion = 25219.182103 eV
Total energy + Delta-G solvation = -4117.456474 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 342.141 amu
Computer time = 0.67 seconds
Orbital eigenvalues (eV)
-41.41629 -39.57964 -38.51567 -37.36557 -36.74811 -34.39922 -33.17541 -32.28160
-31.54930 -30.14922 -29.49564 -28.72924 -27.68369 -25.12637 -24.04551 -23.62973
-22.37369 -21.85859 -19.99411 -19.12908 -18.46093 -18.03356 -17.46123 -17.15483
-16.94300 -15.60401 -15.48572 -15.35038 -15.28088 -14.98685 -14.78504 -14.47484
-14.23903 -14.06587 -13.82046 -13.42529 -13.06601 -12.90964 -12.86650 -12.57402
-12.18143 -12.12551 -11.87740 -11.76622 -11.56790 -11.49853 -11.38874 -11.26553
-10.93014 -10.69957 -10.50551 -10.17695 -10.15184 -9.95777 -9.51198 -9.36679
-9.23197 -8.68949 -8.29807 -8.14381 -7.86294 -6.33737 -4.40065 0.58025
0.78549 2.05125 2.36935 2.76410 2.85295 3.18186 3.26150 3.30308
3.44049 3.86782 4.24465 4.25149 4.36950 4.57119 4.66327 4.70249
4.81982 4.88264 4.95300 5.04909 5.13557 5.16522 5.37573 5.45153
5.61793 5.64402 5.67613 5.75513 5.81207 5.91510 6.02388 6.13430
6.21741 6.22880 6.36333 6.38215 6.60506 6.66169 6.81815 6.86694
7.02914 7.23098 7.28891 7.68915 7.81020 7.94606 7.97663 8.42659
8.62961 9.24233 9.35663 10.74241
Molecular weight = 342.14amu
Principal moments of inertia in cm(-1)
A = 0.023839 B = 0.002397 C = 0.002296
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1174.246990 B =11677.133184 C =12192.246549
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.895 5.895
2 C 0.073 3.927
3 Si 0.902 3.098
4 H -0.279 1.279
5 H -0.284 1.284
6 H -0.272 1.272
7 C -0.535 4.535
8 H 0.065 0.935
9 C 0.247 3.753
10 O -0.586 6.586
11 C -0.135 4.135
12 C 0.090 3.910
13 N -0.603 5.603
14 C 0.508 3.492
15 O -0.542 6.542
16 C 0.080 3.920
17 N -0.503 5.503
18 C 0.131 3.869
19 C -0.213 4.213
20 C 0.011 3.989
21 C -0.129 4.129
22 C -0.085 4.085
23 C -0.144 4.144
24 C -0.047 4.047
25 C -0.151 4.151
26 C 0.551 3.449
27 O -0.521 6.521
28 C 0.124 3.876
29 H 0.268 0.732
30 H 0.383 0.617
31 H 0.068 0.932
32 H 0.090 0.910
33 H 0.062 0.938
34 H 0.066 0.934
35 H 0.125 0.875
36 H 0.119 0.881
37 H 0.157 0.843
38 H 0.148 0.852
39 H 0.131 0.869
40 H 0.126 0.874
41 H 0.127 0.873
42 H 0.135 0.865
43 H 0.062 0.938
44 H 0.073 0.927
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.817 -20.607 -8.817 22.429
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.534 5.534
2 C -0.129 4.129
3 Si 0.730 3.270
4 H -0.205 1.205
5 H -0.210 1.210
6 H -0.196 1.196
7 C -0.574 4.574
8 H 0.083 0.917
9 C 0.207 3.793
10 O -0.395 6.395
11 C -0.173 4.173
12 C -0.032 4.032
13 N -0.337 5.337
14 C 0.294 3.706
15 O -0.420 6.420
16 C -0.045 4.045
17 N -0.218 5.218
18 C 0.011 3.989
19 C -0.236 4.236
20 C 0.009 3.991
21 C -0.147 4.147
22 C -0.103 4.103
23 C -0.162 4.162
24 C -0.065 4.065
25 C -0.154 4.154
26 C 0.346 3.654
27 O -0.398 6.398
28 C 0.002 3.998
29 H 0.078 0.922
30 H 0.233 0.767
31 H 0.087 0.913
32 H 0.108 0.892
33 H 0.080 0.920
34 H 0.085 0.915
35 H 0.143 0.857
36 H 0.137 0.863
37 H 0.174 0.826
38 H 0.166 0.834
39 H 0.149 0.851
40 H 0.144 0.856
41 H 0.145 0.855
42 H 0.153 0.847
43 H 0.080 0.920
44 H 0.091 0.909
Dipole moment (debyes) X Y Z Total
from point charges 1.714 -20.573 -8.929 22.492
hybrid contribution -0.023 1.476 0.028 1.477
sum 1.691 -19.096 -8.902 21.137
Atomic orbital electron populations
1.69696 1.05976 1.27697 1.50003 1.24976 0.95017 0.99545 0.93410
0.86401 0.80017 0.82433 0.78169 1.20456 1.21005 1.19645 1.21493
0.94200 0.90211 1.51462 0.91727 1.19484 0.86460 0.90366 0.82961
1.86134 1.48934 1.54529 1.49941 1.23293 1.03074 0.90342 1.00629
1.22601 0.84517 0.97742 0.98358 1.48613 1.21234 1.21762 1.42050
1.20227 0.86230 0.81164 0.82972 1.90714 1.21046 1.70952 1.59303
1.21746 0.94236 0.87441 1.01123 1.44653 1.35764 1.11518 1.29824
1.21432 0.98413 0.84909 0.94154 1.21373 1.01101 0.98884 1.02274
1.19128 0.94132 0.92559 0.93250 1.20846 0.97223 0.97708 0.98938
1.21041 0.96763 0.98002 0.94512 1.20880 1.01032 0.93076 1.01251
1.20834 0.92457 0.98729 0.94521 1.19824 1.01563 0.93371 1.00645
1.18130 0.79409 0.88471 0.79397 1.90878 1.66503 1.31027 1.51437
1.22107 0.97410 0.90054 0.90190 0.92193 0.76714 0.91280 0.89196
0.91970 0.91550 0.85704 0.86347 0.82587 0.83421 0.85088 0.85624
0.85468 0.84670 0.91986 0.90887
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.89 -22.52 10.73 55.43 0.59 -21.93 16
2 C 0.07 1.86 5.24 -17.82 -0.09 1.77 16
3 Si 0.90 20.21 29.54 -169.99 -5.02 15.19 16
4 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16
5 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16
6 H -0.27 -6.16 7.11 56.52 0.40 -5.75 16
7 C -0.54 -13.91 8.22 -34.44 -0.28 -14.19 16
8 H 0.06 1.71 7.62 -52.49 -0.40 1.31 16
9 C 0.25 5.83 0.84 -89.93 -0.08 5.76 16
10 O -0.59 -14.22 13.07 -35.23 -0.46 -14.68 16
11 C -0.13 -2.81 5.43 -24.59 -0.13 -2.94 16
12 C 0.09 1.53 6.68 -2.53 -0.02 1.51 16
13 N -0.60 -11.58 3.33 -170.51 -0.57 -12.15 16
14 C 0.51 9.37 7.91 -10.99 -0.09 9.28 16
15 O -0.54 -12.00 16.76 5.55 0.09 -11.91 16
16 C 0.08 1.08 4.77 -5.19 -0.02 1.06 16
17 N -0.50 -7.04 2.10 -119.03 -0.25 -7.29 16
18 C 0.13 1.42 10.16 -16.85 -0.17 1.25 16
19 C -0.21 -2.10 10.03 -37.70 -0.38 -2.48 16
20 C 0.01 0.13 5.89 -104.92 -0.62 -0.49 16
21 C -0.13 -1.16 9.83 -39.63 -0.39 -1.55 16
22 C -0.08 -0.70 9.96 -39.88 -0.40 -1.10 16
23 C -0.14 -1.35 9.96 -39.88 -0.40 -1.75 16
24 C -0.05 -0.57 9.62 -39.66 -0.38 -0.95 16
25 C -0.15 -2.10 5.90 -104.82 -0.62 -2.71 16
26 C 0.55 8.93 7.61 -12.84 -0.10 8.84 16
27 O -0.52 -9.94 16.06 5.11 0.08 -9.86 16
28 C 0.12 2.77 6.22 -3.06 -0.02 2.75 16
29 H 0.27 6.49 8.31 -40.82 -0.34 6.15 16
30 H 0.38 9.25 7.53 45.56 0.34 9.60 16
31 H 0.07 1.51 8.04 -51.93 -0.42 1.09 16
32 H 0.09 1.92 7.54 -51.93 -0.39 1.53 16
33 H 0.06 0.87 7.48 -51.93 -0.39 0.48 16
34 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16
35 H 0.13 1.68 7.05 -51.93 -0.37 1.31 16
36 H 0.12 1.11 7.97 -51.93 -0.41 0.69 16
37 H 0.16 1.19 7.98 -52.48 -0.42 0.77 16
38 H 0.15 0.98 8.06 -52.48 -0.42 0.56 16
39 H 0.13 0.82 8.06 -52.49 -0.42 0.40 16
40 H 0.13 0.68 8.06 -52.49 -0.42 0.25 16
41 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16
42 H 0.14 1.63 7.80 -52.49 -0.41 1.22 16
43 H 0.06 1.43 8.07 -51.93 -0.42 1.01 16
44 H 0.07 1.71 7.68 -51.93 -0.40 1.31 16
LS Contribution 370.61 15.07 5.58 5.58
Total: -1.00 -32.69 370.61 -9.05 -41.74
By element:
Atomic # 1 Polarization: 16.18 SS G_CDS: -4.93 Total: 11.25 kcal
Atomic # 6 Polarization: 8.23 SS G_CDS: -4.18 Total: 4.05 kcal
Atomic # 7 Polarization: -41.15 SS G_CDS: -0.22 Total: -41.37 kcal
Atomic # 8 Polarization: -36.17 SS G_CDS: -0.29 Total: -36.45 kcal
Atomic # 14 Polarization: 20.21 SS G_CDS: -5.02 Total: 15.19 kcal
Total LS contribution 5.58 Total: 5.58 kcal
Total: -32.69 -9.05 -41.74 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000592849858.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -23.415 kcal
(2) G-P(sol) polarization free energy of solvation -32.688 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.104 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.054 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.743 kcal
(6) G-S(sol) free energy of system = (1) + (5) -65.158 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.67 seconds