Wall clock time and date at job start Sat Apr 11 2020 06:32:40
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31515 * 1
3 3 Si 1.86800 * 119.99841 * 2 1
4 4 H 1.48500 * 109.46936 * 274.98437 * 3 2 1
5 5 H 1.48496 * 109.47595 * 34.98433 * 3 2 1
6 6 H 1.48497 * 109.47002 * 154.98464 * 3 2 1
7 7 C 1.37875 * 120.00139 * 179.97438 * 2 1 3
8 8 H 1.07998 * 120.00250 * 186.13193 * 7 2 1
9 9 C 1.50701 * 119.99870 * 6.14377 * 7 2 1
10 10 O 1.42905 * 110.77290 * 294.98373 * 9 7 2
11 11 C 1.55152 * 110.72521 * 58.22194 * 9 7 2
12 12 C 1.54906 * 101.58338 * 153.86908 * 11 9 7
13 13 N 1.47432 * 104.82997 * 322.98968 * 12 11 9
14 14 C 1.34771 * 125.64731 * 204.08905 * 13 12 11
15 15 O 1.21285 * 119.99969 * 180.02562 * 14 13 12
16 16 C 1.50701 * 120.00417 * 0.02857 * 14 13 12
17 17 N 1.46500 * 109.47502 * 179.97438 * 16 14 13
18 18 C 1.36539 * 118.85937 * 90.00212 * 17 16 14
19 19 C 1.34290 * 122.41170 * 179.74251 * 18 17 16
20 20 C 1.46369 * 119.41811 * 359.97438 * 19 18 17
21 21 C 1.39574 * 122.03896 * 180.02562 * 20 19 18
22 22 C 1.36727 * 119.49065 * 179.97438 * 21 20 19
23 23 C 1.38902 * 120.88631 * 0.02562 * 22 21 20
24 24 C 1.36747 * 120.89023 * 359.97438 * 23 22 21
25 25 C 1.39467 * 119.50417 * 0.02562 * 24 23 22
26 26 C 1.34779 * 118.86273 * 269.73481 * 17 16 14
27 27 O 1.21789 * 120.39312 * 0.29899 * 26 17 16
28 28 C 1.47023 * 108.70206 * 24.36081 * 13 12 11
29 29 H 0.97005 * 119.99772 * 0.02562 * 1 2 3
30 30 H 0.96698 * 114.00092 * 61.79245 * 10 9 7
31 31 H 1.08999 * 111.00335 * 35.79156 * 11 9 7
32 32 H 1.09001 * 111.00494 * 271.94307 * 11 9 7
33 33 H 1.09001 * 110.37184 * 204.15635 * 12 11 9
34 34 H 1.08998 * 110.46359 * 81.87653 * 12 11 9
35 35 H 1.08999 * 109.46756 * 59.99488 * 16 14 13
36 36 H 1.09004 * 109.47218 * 300.00116 * 16 14 13
37 37 H 1.08004 * 118.79768 * 359.71639 * 18 17 16
38 38 H 1.08008 * 120.29040 * 179.97438 * 19 18 17
39 39 H 1.07998 * 120.26039 * 359.97438 * 21 20 19
40 40 H 1.07998 * 119.55762 * 179.97438 * 22 21 20
41 41 H 1.08000 * 119.55884 * 180.02562 * 23 22 21
42 42 H 1.07999 * 120.25427 * 180.02562 * 24 23 22
43 43 H 1.08996 * 109.88290 * 118.12701 * 28 13 12
44 44 H 1.09000 * 109.87596 * 239.29287 * 28 13 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2491 1.6178 0.0000
4 1 2.3912 2.1072 -1.3948
5 1 1.5033 2.6200 0.8027
6 1 3.5953 1.4121 0.5920
7 6 2.0046 -1.1940 0.0005
8 1 3.0799 -1.1967 0.1004
9 6 1.2575 -2.4954 -0.1386
10 8 0.4067 -2.7144 0.9885
11 6 0.4398 -2.5210 -1.4568
12 6 0.3487 -4.0417 -1.7370
13 7 1.6531 -4.5824 -1.3127
14 6 2.2143 -5.7225 -1.7614
15 8 3.2964 -6.0725 -1.3402
16 6 1.4973 -6.5626 -2.7868
17 7 2.3088 -7.7393 -3.1080
18 6 2.1358 -8.8789 -2.3762
19 6 2.8372 -9.9995 -2.6123
20 6 3.8266 -10.0144 -3.6910
21 6 4.5852 -11.1487 -3.9842
22 6 5.4948 -11.1050 -5.0040
23 6 5.6737 -9.9475 -5.7507
24 6 4.9444 -8.8214 -5.4858
25 6 4.0091 -8.8364 -4.4514
26 6 3.1965 -7.6611 -4.1191
27 8 3.3231 -6.6266 -4.7493
28 6 2.2371 -3.6751 -0.3140
29 1 -0.4850 0.8401 -0.0004
30 1 -0.2792 -2.0421 1.1000
31 1 0.9726 -2.0074 -2.2571
32 1 -0.5509 -2.0907 -1.3104
33 1 0.1908 -4.2229 -2.8002
34 1 -0.4555 -4.4893 -1.1531
35 1 1.3369 -5.9746 -3.6904
36 1 0.5354 -6.8826 -2.3860
37 1 1.4084 -8.8792 -1.5778
38 1 2.6728 -10.8819 -2.0117
39 1 4.4548 -12.0541 -3.4100
40 1 6.0826 -11.9819 -5.2316
41 1 6.3979 -9.9368 -6.5519
42 1 5.0916 -7.9271 -6.0732
43 1 2.3635 -4.1987 0.6335
44 1 3.1999 -3.3056 -0.6672
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000592849858.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:32:40
Heat of formation + Delta-G solvation = -87.050591 kcal
Electronic energy + Delta-G solvation = -29337.587907 eV
Core-core repulsion = 25219.182103 eV
Total energy + Delta-G solvation = -4118.405803 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 342.141 amu
Computer time = 0.80 seconds
Orbital eigenvalues (eV)
-42.43792 -40.99953 -39.54534 -38.90031 -37.86482 -36.15008 -34.25554 -34.08519
-32.38364 -31.69775 -30.48576 -30.17746 -29.04304 -26.86559 -24.95081 -24.64595
-23.83551 -22.70509 -21.70335 -20.61152 -19.39413 -19.21546 -18.86011 -18.49247
-18.25755 -17.00865 -16.88531 -16.80334 -16.42636 -16.18365 -16.03096 -15.83980
-15.54128 -15.25042 -14.87323 -14.81077 -14.33322 -14.05613 -13.89538 -13.73538
-13.62154 -13.51123 -13.27100 -13.23236 -13.10096 -12.83467 -12.68835 -12.66109
-12.47306 -12.30349 -12.01562 -12.00982 -11.35143 -11.25092 -11.18255 -10.64639
-10.48354 -10.18660 -10.05559 -9.73389 -8.72910 -8.29118 -6.41986 -0.26926
-0.01885 1.18451 1.33500 1.37778 1.41298 1.42038 1.50390 1.85189
2.09423 2.37018 2.96789 2.99534 3.35453 3.37856 3.65097 3.80213
3.81137 3.89595 3.94217 4.03465 4.07766 4.14333 4.22271 4.35854
4.39165 4.41759 4.52424 4.61125 4.67501 4.85629 4.88920 4.90291
5.01824 5.12913 5.14888 5.26166 5.44482 5.46085 5.49161 5.49591
5.61367 5.72638 5.94553 6.05143 6.07406 6.44925 6.60797 6.74546
6.95481 7.27292 7.39870 8.77192
Molecular weight = 342.14amu
Principal moments of inertia in cm(-1)
A = 0.023839 B = 0.002397 C = 0.002296
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1174.246990 B =11677.133184 C =12192.246549
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.900 5.900
2 C 0.041 3.959
3 Si 0.955 3.045
4 H -0.275 1.275
5 H -0.275 1.275
6 H -0.280 1.280
7 C -0.567 4.567
8 H 0.045 0.955
9 C 0.238 3.762
10 O -0.590 6.590
11 C -0.128 4.128
12 C 0.099 3.901
13 N -0.606 5.606
14 C 0.505 3.495
15 O -0.586 6.586
16 C 0.089 3.911
17 N -0.505 5.505
18 C 0.102 3.898
19 C -0.198 4.198
20 C -0.007 4.007
21 C -0.123 4.123
22 C -0.079 4.079
23 C -0.139 4.139
24 C -0.075 4.075
25 C -0.186 4.186
26 C 0.533 3.467
27 O -0.574 6.574
28 C 0.131 3.869
29 H 0.273 0.727
30 H 0.381 0.619
31 H 0.051 0.949
32 H 0.085 0.915
33 H 0.100 0.900
34 H 0.090 0.910
35 H 0.126 0.874
36 H 0.171 0.829
37 H 0.191 0.809
38 H 0.187 0.813
39 H 0.167 0.833
40 H 0.165 0.835
41 H 0.152 0.848
42 H 0.119 0.881
43 H 0.048 0.952
44 H 0.049 0.951
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.078 -23.715 -9.129 25.412
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.538 5.538
2 C -0.161 4.161
3 Si 0.781 3.219
4 H -0.200 1.200
5 H -0.200 1.200
6 H -0.205 1.205
7 C -0.605 4.605
8 H 0.063 0.937
9 C 0.198 3.802
10 O -0.399 6.399
11 C -0.167 4.167
12 C -0.022 4.022
13 N -0.339 5.339
14 C 0.293 3.707
15 O -0.467 6.467
16 C -0.036 4.036
17 N -0.219 5.219
18 C -0.016 4.016
19 C -0.220 4.220
20 C -0.009 4.009
21 C -0.141 4.141
22 C -0.097 4.097
23 C -0.157 4.157
24 C -0.094 4.094
25 C -0.189 4.189
26 C 0.330 3.670
27 O -0.456 6.456
28 C 0.008 3.992
29 H 0.082 0.918
30 H 0.231 0.769
31 H 0.070 0.930
32 H 0.104 0.896
33 H 0.118 0.882
34 H 0.108 0.892
35 H 0.144 0.856
36 H 0.188 0.812
37 H 0.208 0.792
38 H 0.205 0.795
39 H 0.185 0.815
40 H 0.182 0.818
41 H 0.170 0.830
42 H 0.137 0.863
43 H 0.066 0.934
44 H 0.067 0.933
Dipole moment (debyes) X Y Z Total
from point charges 0.778 -23.725 -9.230 25.469
hybrid contribution 0.360 2.333 0.139 2.365
sum 1.138 -21.391 -9.091 23.271
Atomic orbital electron populations
1.69732 1.06342 1.28468 1.49294 1.25520 0.95887 1.01694 0.92980
0.85597 0.78627 0.79481 0.78224 1.20037 1.20015 1.20487 1.21687
0.93689 0.92127 1.52994 0.93656 1.19551 0.86894 0.89778 0.83993
1.86115 1.48903 1.54332 1.50565 1.23078 1.01801 0.93383 0.98390
1.22681 0.83822 0.94575 1.01146 1.48658 1.21963 1.21788 1.41471
1.21171 0.85770 0.80796 0.82945 1.90684 1.23126 1.71981 1.60943
1.21850 0.95323 0.87034 0.99431 1.44720 1.35270 1.12425 1.29519
1.22080 1.00178 0.84230 0.95144 1.21918 0.99145 0.99788 1.01158
1.19516 0.95234 0.92539 0.93606 1.21317 0.96021 0.97864 0.98917
1.21530 0.96272 0.98540 0.93342 1.21232 1.00337 0.92449 1.01653
1.20919 0.93827 0.99607 0.95045 1.20000 1.02641 0.93821 1.02445
1.18688 0.79891 0.88720 0.79700 1.90820 1.68396 1.32825 1.53551
1.21766 0.96526 0.90399 0.90550 0.91759 0.76920 0.92991 0.89625
0.88168 0.89159 0.85620 0.81163 0.79204 0.79540 0.81521 0.81764
0.83020 0.86318 0.93389 0.93282
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.90 -45.27 10.73 21.45 0.23 -45.04 16
2 C 0.04 2.13 5.24 84.65 0.44 2.57 16
3 Si 0.95 41.87 29.54 68.60 2.03 43.89 16
4 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16
5 H -0.28 -11.59 7.11 99.48 0.71 -10.89 16
6 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16
7 C -0.57 -30.47 8.22 25.60 0.21 -30.26 16
8 H 0.05 2.53 7.62 -2.91 -0.02 2.51 16
9 C 0.24 11.48 0.84 -10.35 -0.01 11.47 16
10 O -0.59 -28.95 13.07 -148.98 -1.95 -30.90 16
11 C -0.13 -5.32 5.43 31.98 0.17 -5.15 16
12 C 0.10 3.17 6.68 86.85 0.58 3.75 16
13 N -0.61 -23.23 3.33 -811.77 -2.70 -25.93 16
14 C 0.50 18.60 7.91 87.66 0.69 19.29 16
15 O -0.59 -26.75 16.76 -3.05 -0.05 -26.80 16
16 C 0.09 2.28 4.77 85.63 0.41 2.69 16
17 N -0.51 -13.86 2.10 -648.66 -1.36 -15.21 16
18 C 0.10 1.98 10.16 83.06 0.84 2.82 16
19 C -0.20 -3.33 10.03 23.49 0.24 -3.09 16
20 C -0.01 -0.15 5.89 -20.06 -0.12 -0.27 16
21 C -0.12 -1.77 9.83 22.24 0.22 -1.55 16
22 C -0.08 -1.02 9.96 22.07 0.22 -0.80 16
23 C -0.14 -2.39 9.96 22.08 0.22 -2.17 16
24 C -0.07 -1.91 9.62 22.22 0.21 -1.69 16
25 C -0.19 -5.29 5.90 -19.99 -0.12 -5.40 16
26 C 0.53 18.01 7.61 86.45 0.66 18.66 16
27 O -0.57 -23.50 16.06 -4.63 -0.07 -23.57 16
28 C 0.13 6.08 6.22 86.73 0.54 6.62 16
29 H 0.27 13.03 8.31 -92.70 -0.77 12.26 16
30 H 0.38 18.59 7.53 -74.06 -0.56 18.03 16
31 H 0.05 2.31 8.04 -2.39 -0.02 2.29 16
32 H 0.09 3.62 7.54 -2.39 -0.02 3.60 16
33 H 0.10 2.50 7.48 -2.39 -0.02 2.48 16
34 H 0.09 2.52 8.14 -2.39 -0.02 2.51 16
35 H 0.13 3.27 7.05 -2.39 -0.02 3.26 16
36 H 0.17 2.52 7.97 -2.39 -0.02 2.51 16
37 H 0.19 2.20 7.98 -2.91 -0.02 2.18 16
38 H 0.19 1.55 8.06 -2.91 -0.02 1.52 16
39 H 0.17 1.16 8.06 -2.91 -0.02 1.14 16
40 H 0.16 0.89 8.06 -2.91 -0.02 0.86 16
41 H 0.15 1.75 8.06 -2.91 -0.02 1.73 16
42 H 0.12 3.23 7.80 -2.91 -0.02 3.21 16
43 H 0.05 2.31 8.07 -2.39 -0.02 2.29 16
44 H 0.05 2.47 7.68 -2.39 -0.02 2.45 16
Total: -1.00 -77.12 370.61 2.02 -75.10
By element:
Atomic # 1 Polarization: 30.49 SS G_CDS: 0.48 Total: 30.97 kcal
Atomic # 6 Polarization: 12.08 SS G_CDS: 5.41 Total: 17.49 kcal
Atomic # 7 Polarization: -82.35 SS G_CDS: -3.83 Total: -86.18 kcal
Atomic # 8 Polarization: -79.21 SS G_CDS: -2.07 Total: -81.28 kcal
Atomic # 14 Polarization: 41.87 SS G_CDS: 2.03 Total: 43.89 kcal
Total: -77.12 2.02 -75.10 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000592849858.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -11.949 kcal
(2) G-P(sol) polarization free energy of solvation -77.124 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.073 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.023 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.101 kcal
(6) G-S(sol) free energy of system = (1) + (5) -87.051 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.80 seconds