Wall clock time and date at job start Sat Apr 11 2020 06:31:21
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31559 * 1
3 3 Si 1.86804 * 119.99408 * 2 1
4 4 H 1.48500 * 109.46767 * 180.02562 * 3 2 1
5 5 H 1.48500 * 109.47203 * 299.99902 * 3 2 1
6 6 H 1.48504 * 109.47170 * 60.00112 * 3 2 1
7 7 C 1.38651 * 120.00304 * 180.02562 * 2 1 3
8 8 H 1.07998 * 119.99898 * 179.97438 * 7 2 1
9 9 O 1.34830 * 119.99868 * 0.02562 * 7 2 1
10 10 C 1.35746 * 116.99936 * 174.96875 * 9 7 2
11 11 C 1.38948 * 120.03478 * 5.35567 * 10 9 7
12 12 C 1.38125 * 120.07457 * 180.02562 * 11 10 9
13 13 C 1.38204 * 120.13263 * 359.70264 * 12 11 10
14 14 C 1.38919 * 120.07157 * 0.55166 * 13 12 11
15 15 N 1.39940 * 120.04075 * 179.74490 * 14 13 12
16 16 C 1.34775 * 120.00148 * 214.85225 * 15 14 13
17 17 O 1.21580 * 120.00056 * 355.49638 * 16 15 14
18 18 N 1.34773 * 119.99686 * 175.49491 * 16 15 14
19 19 C 1.46507 * 119.99738 * 180.02562 * 18 16 15
20 20 C 1.50696 * 109.47171 * 179.97438 * 19 18 16
21 21 C 1.38262 * 120.00132 * 270.02101 * 20 19 18
22 22 C 1.38209 * 120.00336 * 179.97438 * 21 20 19
23 23 C 1.38254 * 119.99846 * 359.80395 * 22 21 20
24 24 C 1.38221 * 120.00220 * 0.42609 * 23 22 21
25 25 C 1.50693 * 120.00120 * 179.80546 * 24 23 22
26 26 O 1.42906 * 109.47248 * 269.72541 * 25 24 23
27 27 C 1.38210 * 120.00170 * 89.99512 * 20 19 18
28 28 C 1.38739 * 120.03577 * 185.34247 * 10 9 7
29 29 H 0.97001 * 120.00309 * 0.02562 * 1 2 3
30 30 H 1.08005 * 119.96760 * 359.97438 * 11 10 9
31 31 H 1.07995 * 119.93610 * 180.02562 * 12 11 10
32 32 H 1.08004 * 119.96939 * 180.27624 * 13 12 11
33 33 H 0.97005 * 119.99458 * 34.84991 * 15 14 13
34 34 H 0.96999 * 120.00692 * 359.97438 * 18 16 15
35 35 H 1.09001 * 109.47034 * 59.99527 * 19 18 16
36 36 H 1.09000 * 109.46703 * 299.99330 * 19 18 16
37 37 H 1.07999 * 119.99486 * 359.97438 * 21 20 19
38 38 H 1.08000 * 119.99924 * 180.02562 * 22 21 20
39 39 H 1.08005 * 120.00257 * 180.22801 * 23 22 21
40 40 H 1.08997 * 109.47452 * 149.72952 * 25 24 23
41 41 H 1.09004 * 109.47580 * 29.72695 * 25 24 23
42 42 H 0.96701 * 114.00146 * 179.97438 * 26 25 24
43 43 H 1.07999 * 119.99947 * 0.02562 * 27 20 19
44 44 H 1.08004 * 120.06575 * 0.03688 * 28 10 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3156 0.0000 0.0000
3 14 2.2494 1.6179 0.0000
4 1 3.7095 1.3466 -0.0006
5 1 1.8906 2.3965 -1.2125
6 1 1.8906 2.3965 1.2125
7 6 2.0089 -1.2007 -0.0005
8 1 3.0889 -1.2006 -0.0010
9 8 1.3348 -2.3684 -0.0016
10 6 2.0702 -3.5044 -0.1081
11 6 3.4580 -3.4380 -0.0977
12 6 4.2071 -4.5934 -0.2066
13 6 3.5791 -5.8193 -0.3201
14 6 2.1919 -5.8919 -0.3364
15 7 1.5567 -7.1331 -0.4567
16 6 0.4020 -7.2353 -1.1441
17 8 -0.1305 -6.2374 -1.5898
18 7 -0.1623 -8.4439 -1.3373
19 6 -1.4173 -8.5551 -2.0851
20 6 -1.8316 -10.0021 -2.1586
21 6 -1.4037 -10.7912 -3.2102
22 6 -1.7832 -12.1185 -3.2774
23 6 -2.5875 -12.6582 -2.2909
24 6 -3.0193 -11.8683 -1.2421
25 6 -3.8996 -12.4555 -0.1692
26 8 -5.2711 -12.2918 -0.5358
27 6 -2.6390 -10.5407 -1.1746
28 6 1.4368 -4.7330 -0.2273
29 1 -0.4850 0.8400 -0.0004
30 1 3.9517 -2.4819 -0.0052
31 1 5.2857 -4.5393 -0.1979
32 1 4.1674 -6.7215 -0.4006
33 1 1.9477 -7.9198 -0.0452
34 1 0.2627 -9.2401 -0.9820
35 1 -1.2751 -8.1665 -3.0935
36 1 -2.1933 -7.9799 -1.5800
37 1 -0.7728 -10.3703 -3.9791
38 1 -1.4485 -12.7349 -4.0987
39 1 -2.8811 -13.6964 -2.3415
40 1 -3.7124 -11.9438 0.7748
41 1 -3.6775 -13.5168 -0.0575
42 1 -5.8961 -12.6480 0.1103
43 1 -2.9733 -9.9244 -0.3532
44 1 0.3582 -4.7872 -0.2360
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000729557076.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:31:21
Heat of formation + Delta-G solvation = -44.342033 kcal
Electronic energy + Delta-G solvation = -27532.219015 eV
Core-core repulsion = 23415.665193 eV
Total energy + Delta-G solvation = -4116.553821 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 342.141 amu
Computer time = 0.71 seconds
Orbital eigenvalues (eV)
-40.43695 -39.81403 -38.64167 -37.17099 -36.58988 -34.95093 -34.01262 -32.19764
-32.09135 -31.56132 -29.37011 -28.39249 -26.48069 -26.15554 -25.19600 -22.63019
-22.26490 -21.40578 -20.99397 -20.57576 -18.41016 -18.19334 -17.89542 -17.13433
-16.83847 -16.23530 -15.99658 -15.40118 -15.30677 -14.98665 -14.81407 -14.46389
-14.31783 -14.12847 -13.98081 -13.81838 -13.47541 -13.21136 -13.00506 -12.94184
-12.63847 -12.46825 -12.41386 -11.69650 -11.48828 -11.41086 -11.30667 -11.15062
-10.98322 -10.73599 -10.54158 -10.39388 -9.97164 -9.65204 -9.27047 -9.25401
-9.13761 -9.06669 -8.76203 -7.60065 -7.11610 -6.36183 -3.95227 0.81547
0.95893 2.15913 2.41322 2.74197 3.17187 3.18855 3.24633 3.31732
3.40167 3.99488 4.03056 4.27578 4.32815 4.46367 4.56078 4.66666
4.72436 4.80331 4.91440 5.06429 5.11493 5.18383 5.34950 5.37522
5.48832 5.66655 5.68086 5.69954 5.89379 6.03860 6.14243 6.15489
6.22729 6.28991 6.34387 6.47526 6.56979 6.60297 6.89879 7.09402
7.13406 7.14468 7.29865 7.41200 7.56058 7.88532 8.08025 8.10129
8.73253 9.08785 9.81230 10.81909
Molecular weight = 342.14amu
Principal moments of inertia in cm(-1)
A = 0.017711 B = 0.001878 C = 0.001769
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1580.559837 B =14905.058163 C =15823.919523
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.861 5.861
2 C 0.037 3.963
3 Si 0.941 3.059
4 H -0.267 1.267
5 H -0.276 1.276
6 H -0.277 1.277
7 C -0.390 4.390
8 H 0.093 0.907
9 O -0.174 6.174
10 C 0.167 3.833
11 C -0.247 4.247
12 C -0.059 4.059
13 C -0.237 4.237
14 C 0.192 3.808
15 N -0.681 5.681
16 C 0.698 3.302
17 O -0.558 6.558
18 N -0.744 5.744
19 C 0.180 3.820
20 C -0.107 4.107
21 C -0.092 4.092
22 C -0.125 4.125
23 C -0.093 4.093
24 C -0.098 4.098
25 C 0.117 3.883
26 O -0.567 6.567
27 C -0.078 4.078
28 C -0.186 4.186
29 H 0.269 0.731
30 H 0.127 0.873
31 H 0.111 0.889
32 H 0.107 0.893
33 H 0.401 0.599
34 H 0.395 0.605
35 H 0.077 0.923
36 H 0.078 0.922
37 H 0.127 0.873
38 H 0.126 0.874
39 H 0.122 0.878
40 H 0.056 0.944
41 H 0.054 0.946
42 H 0.381 0.619
43 H 0.126 0.874
44 H 0.136 0.864
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.547 -27.880 -1.202 28.022
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.496 5.496
2 C -0.167 4.167
3 Si 0.766 3.234
4 H -0.191 1.191
5 H -0.202 1.202
6 H -0.202 1.202
7 C -0.467 4.467
8 H 0.110 0.890
9 O -0.077 6.077
10 C 0.112 3.888
11 C -0.266 4.266
12 C -0.078 4.078
13 C -0.259 4.259
14 C 0.099 3.901
15 N -0.329 5.329
16 C 0.398 3.602
17 O -0.433 6.433
18 N -0.401 5.401
19 C 0.056 3.944
20 C -0.108 4.108
21 C -0.111 4.111
22 C -0.143 4.143
23 C -0.112 4.112
24 C -0.098 4.098
25 C 0.039 3.961
26 O -0.373 6.373
27 C -0.096 4.096
28 C -0.208 4.208
29 H 0.079 0.921
30 H 0.145 0.855
31 H 0.129 0.871
32 H 0.125 0.875
33 H 0.235 0.765
34 H 0.228 0.772
35 H 0.096 0.904
36 H 0.096 0.904
37 H 0.145 0.855
38 H 0.144 0.856
39 H 0.140 0.860
40 H 0.074 0.926
41 H 0.073 0.927
42 H 0.228 0.772
43 H 0.144 0.856
44 H 0.153 0.847
Dipole moment (debyes) X Y Z Total
from point charges -3.257 -26.455 -2.151 26.742
hybrid contribution 0.690 -0.347 0.798 1.111
sum -2.567 -26.802 -1.353 26.958
Atomic orbital electron populations
1.70068 1.05944 1.27445 1.46129 1.25305 0.95838 0.98823 0.96699
0.85644 0.79107 0.80450 0.78169 1.19105 1.20199 1.20223 1.21390
0.91826 0.80822 1.52641 0.88959 1.83993 1.34232 1.11329 1.78184
1.19146 0.89985 0.87871 0.91774 1.21174 0.93770 0.99049 1.12652
1.20476 0.98316 0.91670 0.97322 1.20238 0.91785 0.97683 1.16165
1.16947 0.90506 0.83221 0.99458 1.42450 1.24287 1.10203 1.55926
1.15966 0.80911 0.83786 0.79516 1.91034 1.63063 1.34882 1.54320
1.45125 1.26513 1.07428 1.60991 1.20022 0.85435 0.91480 0.97455
1.19908 0.99411 0.95589 0.95855 1.21201 0.98548 0.93736 0.97579
1.21153 0.98709 0.95430 0.99016 1.21093 0.96834 0.99805 0.93420
1.19608 0.98887 0.94278 0.97052 1.20976 0.81306 0.98853 0.94936
1.86579 1.15660 1.84466 1.50627 1.21034 0.96199 0.94200 0.98199
1.20202 1.00778 0.89155 1.10657 0.92131 0.85506 0.87099 0.87500
0.76474 0.77188 0.90432 0.90410 0.85500 0.85614 0.85956 0.92565
0.92731 0.77182 0.85570 0.84673
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.86 -26.24 13.67 55.48 0.76 -25.48 16
2 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16
3 Si 0.94 21.14 29.55 -169.99 -5.02 16.11 16
4 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16
5 H -0.28 -6.10 7.11 56.52 0.40 -5.69 16
6 H -0.28 -6.06 7.11 56.52 0.40 -5.65 16
7 C -0.39 -11.32 9.49 30.88 0.29 -11.03 16
8 H 0.09 2.46 5.20 -52.49 -0.27 2.19 16
9 O -0.17 -5.26 9.75 0.06 0.00 -5.26 16
10 C 0.17 4.31 6.64 -39.13 -0.26 4.05 16
11 C -0.25 -5.55 9.17 -39.36 -0.36 -5.91 16
12 C -0.06 -1.10 10.03 -39.64 -0.40 -1.49 16
13 C -0.24 -4.14 9.96 -39.34 -0.39 -4.54 16
14 C 0.19 3.70 6.30 -83.71 -0.53 3.17 16
15 N -0.68 -10.14 5.34 -14.24 -0.08 -10.22 16
16 C 0.70 11.25 8.41 -86.92 -0.73 10.52 16
17 O -0.56 -12.02 13.78 5.29 0.07 -11.95 16
18 N -0.74 -8.34 5.55 -66.41 -0.37 -8.71 16
19 C 0.18 1.96 5.80 -5.19 -0.03 1.93 16
20 C -0.11 -0.96 5.25 -104.63 -0.55 -1.51 16
21 C -0.09 -0.74 9.70 -39.58 -0.38 -1.13 16
22 C -0.13 -0.90 10.05 -39.59 -0.40 -1.30 16
23 C -0.09 -0.69 9.70 -39.58 -0.38 -1.08 16
24 C -0.10 -0.80 5.51 -104.62 -0.58 -1.38 16
25 C 0.12 0.74 7.17 36.00 0.26 0.99 16
26 O -0.57 -4.24 13.64 -35.23 -0.48 -4.72 16
27 C -0.08 -0.69 9.36 -39.58 -0.37 -1.06 16
28 C -0.19 -4.42 8.64 -39.21 -0.34 -4.76 16
29 H 0.27 7.47 8.31 -40.82 -0.34 7.14 16
30 H 0.13 2.83 5.63 -52.48 -0.30 2.53 16
31 H 0.11 1.69 8.06 -52.49 -0.42 1.27 16
32 H 0.11 1.49 8.06 -52.48 -0.42 1.07 16
33 H 0.40 4.18 8.84 -40.82 -0.36 3.82 16
34 H 0.39 3.20 8.48 -40.82 -0.35 2.86 16
35 H 0.08 0.90 8.09 -51.93 -0.42 0.48 16
36 H 0.08 0.94 8.09 -51.93 -0.42 0.52 16
37 H 0.13 0.90 8.06 -52.49 -0.42 0.47 16
38 H 0.13 0.65 8.06 -52.49 -0.42 0.22 16
39 H 0.12 0.69 8.06 -52.48 -0.42 0.27 16
40 H 0.06 0.30 8.09 -51.93 -0.42 -0.12 16
41 H 0.05 0.25 8.08 -51.93 -0.42 -0.17 16
42 H 0.38 0.99 9.12 45.56 0.42 1.41 16
43 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16
44 H 0.14 3.48 6.22 -52.48 -0.33 3.15 16
LS Contribution 381.77 15.07 5.75 5.75
Total: -1.00 -37.80 381.77 -9.14 -46.94
By element:
Atomic # 1 Polarization: 15.62 SS G_CDS: -4.54 Total: 11.08 kcal
Atomic # 6 Polarization: -8.31 SS G_CDS: -5.24 Total: -13.56 kcal
Atomic # 7 Polarization: -44.72 SS G_CDS: 0.31 Total: -44.41 kcal
Atomic # 8 Polarization: -21.52 SS G_CDS: -0.41 Total: -21.93 kcal
Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.11 kcal
Total LS contribution 5.75 Total: 5.75 kcal
Total: -37.80 -9.14 -46.94 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000729557076.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 2.600 kcal
(2) G-P(sol) polarization free energy of solvation -37.797 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.197 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.145 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.942 kcal
(6) G-S(sol) free energy of system = (1) + (5) -44.342 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.71 seconds