Wall clock time and date at job start Sat Apr 11 2020 06:32:16
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31619 * 1
3 3 Si 1.86798 * 120.00456 * 2 1
4 4 H 1.48493 * 109.47326 * 270.00545 * 3 2 1
5 5 H 1.48506 * 109.46545 * 30.00295 * 3 2 1
6 6 H 1.48498 * 109.47210 * 150.00006 * 3 2 1
7 7 C 1.38815 * 119.99884 * 180.02562 * 2 1 3
8 8 H 1.08004 * 119.99568 * 359.71829 * 7 2 1
9 9 N 1.36929 * 120.00031 * 180.02562 * 7 2 1
10 10 C 1.46506 * 119.99807 * 179.97438 * 9 7 2
11 11 C 1.53002 * 109.47042 * 179.97438 * 10 9 7
12 12 H 1.09006 * 112.84971 * 43.80598 * 11 10 9
13 13 C 1.53775 * 113.61574 * 175.00034 * 11 10 9
14 14 C 1.53780 * 87.08139 * 139.98252 * 13 11 10
15 15 H 1.08997 * 113.61372 * 220.01785 * 14 13 11
16 16 N 1.46501 * 113.61084 * 89.20454 * 14 13 11
17 17 C 1.34779 * 119.99837 * 155.00255 * 16 14 13
18 18 O 1.21618 * 120.00434 * 359.97438 * 17 16 14
19 19 C 1.47268 * 119.99706 * 179.97438 * 17 16 14
20 20 C 1.38417 * 120.59949 * 0.02562 * 19 17 16
21 21 C 1.41789 * 118.70549 * 180.02562 * 20 19 17
22 22 C 1.40319 * 120.18990 * 179.97438 * 21 20 19
23 23 C 1.36492 * 119.87173 * 180.02562 * 22 21 20
24 24 C 1.38810 * 120.47088 * 359.97438 * 23 22 21
25 25 C 1.37856 * 120.63630 * 0.02562 * 24 23 22
26 26 C 1.39070 * 119.99507 * 359.97438 * 25 24 23
27 27 O 1.35021 * 119.88358 * 179.97438 * 26 25 24
28 28 C 1.34339 * 121.43003 * 179.69195 * 27 26 25
29 29 O 1.21682 * 119.92109 * 180.31094 * 28 27 26
30 30 C 1.53777 * 113.61609 * 272.50311 * 11 10 9
31 31 H 0.97000 * 119.99517 * 359.97438 * 1 2 3
32 32 H 0.96999 * 120.00117 * 359.97438 * 9 7 2
33 33 H 1.08992 * 109.47646 * 299.99750 * 10 9 7
34 34 H 1.09000 * 109.46872 * 60.00027 * 10 9 7
35 35 H 1.08999 * 113.61760 * 254.53197 * 13 11 10
36 36 H 1.09002 * 113.61210 * 25.43856 * 13 11 10
37 37 H 0.97002 * 119.99986 * 334.99258 * 16 14 13
38 38 H 1.07995 * 120.64879 * 359.97438 * 20 19 17
39 39 H 1.07995 * 120.06366 * 359.97438 * 22 21 20
40 40 H 1.08002 * 119.75934 * 179.97438 * 23 22 21
41 41 H 1.08001 * 119.67753 * 179.97438 * 24 23 22
42 42 H 1.08000 * 120.00098 * 180.02562 * 25 24 23
43 43 H 1.09000 * 113.61321 * 334.56397 * 30 11 10
44 44 H 1.09001 * 113.61514 * 105.46904 * 30 11 10
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2503 1.6176 0.0000
4 1 2.4977 2.0464 -1.4000
5 1 1.4477 2.6526 0.7002
6 1 3.5478 1.4400 0.7000
7 6 2.0102 -1.2022 -0.0005
8 1 1.4701 -2.1375 0.0036
9 7 3.3795 -1.2022 0.0000
10 6 4.1120 -2.4710 0.0000
11 6 5.6163 -2.1915 0.0000
12 1 5.9000 -1.4015 0.6953
13 6 6.4783 -3.4590 0.1228
14 6 7.4240 -2.8207 -0.9083
15 1 7.8117 -3.5278 -1.6416
16 7 8.4719 -1.9910 -0.3087
17 6 9.6290 -1.7857 -0.9687
18 8 9.8034 -2.2896 -2.0617
19 6 10.6823 -0.9511 -0.3661
20 6 10.4972 -0.3721 0.8774
21 6 11.5376 0.4243 1.4194
22 6 11.3829 1.0266 2.6773
23 6 12.3884 1.7924 3.1926
24 6 13.5654 1.9803 2.4812
25 6 13.7389 1.3981 1.2437
26 6 12.7293 0.6134 0.6969
27 8 12.9014 0.0447 -0.5156
28 6 11.9494 -0.7239 -1.0703
29 8 12.1358 -1.2276 -2.1622
30 6 6.2107 -2.0185 -1.4076
31 1 -0.4849 0.8401 0.0004
32 1 3.8646 -0.3622 0.0004
33 1 3.8484 -3.0428 0.8897
34 1 3.8489 -3.0424 -0.8902
35 1 6.9283 -3.5873 1.1072
36 1 5.9832 -4.3604 -0.2382
37 1 8.3330 -1.5892 0.5632
38 1 9.5780 -0.5232 1.4238
39 1 10.4698 0.8851 3.2363
40 1 12.2673 2.2554 4.1608
41 1 14.3526 2.5891 2.9010
42 1 14.6590 1.5508 0.6993
43 1 5.6424 -2.5262 -2.1870
44 1 6.4446 -0.9839 -1.6587
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001700643150.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:32:16
Heat of formation + Delta-G solvation = -18.758970 kcal
Electronic energy + Delta-G solvation = -28370.113519 eV
Core-core repulsion = 24254.669063 eV
Total energy + Delta-G solvation = -4115.444457 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 342.141 amu
Computer time = 1.16 seconds
Orbital eigenvalues (eV)
-42.34590 -40.36899 -39.41773 -38.47277 -37.44359 -35.38429 -34.70384 -33.15763
-31.52508 -31.18804 -30.50403 -27.34272 -25.75436 -25.64026 -24.74190 -23.78001
-23.10357 -21.87272 -21.40271 -20.07698 -19.34087 -18.70058 -17.97422 -17.56905
-17.20719 -16.81361 -16.28749 -15.89681 -15.54525 -15.34768 -15.10128 -14.85447
-14.46879 -14.37681 -14.24880 -13.93375 -13.79196 -13.72206 -13.45288 -12.75864
-12.61768 -12.55904 -12.50425 -12.35162 -12.06119 -11.84804 -11.46731 -11.25068
-10.92735 -10.86420 -10.67120 -10.31028 -10.22050 -10.08672 -9.91910 -9.59773
-9.50672 -9.21108 -8.94177 -8.88836 -7.23355 -5.78063 -3.13107 -0.68529
0.44444 0.93766 1.78573 1.98543 2.74334 2.79409 3.20280 3.33491
3.37623 3.42777 3.44477 3.63977 3.77839 4.09404 4.37500 4.41390
4.50686 4.55658 4.57178 4.62688 4.78542 4.85045 4.88888 4.96682
4.97218 5.13398 5.35762 5.51592 5.51884 5.58720 5.65094 5.66025
5.77012 5.82318 5.89132 5.91718 6.05677 6.07157 6.21451 6.49380
6.65209 6.66522 6.79058 7.04626 7.21866 7.96651 7.98754 8.41318
9.20665 9.93087 10.13182 11.40561
Molecular weight = 342.14amu
Principal moments of inertia in cm(-1)
A = 0.011937 B = 0.002488 C = 0.002201
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2345.097099 B =11250.265882 C =12716.546858
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.935 5.935
2 C 0.002 3.998
3 Si 0.886 3.114
4 H -0.284 1.284
5 H -0.291 1.291
6 H -0.279 1.279
7 C -0.243 4.243
8 H 0.090 0.910
9 N -0.756 5.756
10 C 0.166 3.834
11 C -0.120 4.120
12 H 0.085 0.915
13 C -0.135 4.135
14 C 0.117 3.883
15 H 0.104 0.896
16 N -0.706 5.706
17 C 0.569 3.431
18 O -0.503 6.503
19 C -0.248 4.248
20 C 0.038 3.962
21 C -0.167 4.167
22 C -0.044 4.044
23 C -0.146 4.146
24 C -0.051 4.051
25 C -0.141 4.141
26 C 0.161 3.839
27 O -0.265 6.265
28 C 0.520 3.480
29 O -0.414 6.414
30 C -0.141 4.141
31 H 0.259 0.741
32 H 0.360 0.640
33 H 0.027 0.973
34 H 0.030 0.970
35 H 0.070 0.930
36 H 0.099 0.901
37 H 0.397 0.603
38 H 0.155 0.845
39 H 0.144 0.856
40 H 0.138 0.862
41 H 0.142 0.858
42 H 0.146 0.854
43 H 0.096 0.904
44 H 0.067 0.933
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 30.642 2.172 9.901 32.275
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.583 5.583
2 C -0.193 4.193
3 Si 0.717 3.283
4 H -0.211 1.211
5 H -0.218 1.218
6 H -0.205 1.205
7 C -0.373 4.373
8 H 0.108 0.892
9 N -0.401 5.401
10 C 0.039 3.961
11 C -0.138 4.138
12 H 0.103 0.897
13 C -0.173 4.173
14 C 0.012 3.988
15 H 0.122 0.878
16 N -0.358 5.358
17 C 0.355 3.645
18 O -0.378 6.378
19 C -0.253 4.253
20 C 0.018 3.982
21 C -0.167 4.167
22 C -0.062 4.062
23 C -0.164 4.164
24 C -0.069 4.069
25 C -0.159 4.159
26 C 0.116 3.884
27 O -0.177 6.177
28 C 0.363 3.637
29 O -0.296 6.296
30 C -0.180 4.180
31 H 0.069 0.931
32 H 0.192 0.808
33 H 0.045 0.955
34 H 0.048 0.952
35 H 0.089 0.911
36 H 0.117 0.883
37 H 0.232 0.768
38 H 0.173 0.827
39 H 0.161 0.839
40 H 0.156 0.844
41 H 0.160 0.840
42 H 0.164 0.836
43 H 0.114 0.886
44 H 0.086 0.914
Dipole moment (debyes) X Y Z Total
from point charges 30.783 1.455 8.399 31.942
hybrid contribution 0.225 1.563 0.604 1.691
sum 31.008 3.018 9.003 32.430
Atomic orbital electron populations
1.69705 1.05096 1.25784 1.57712 1.24686 0.95252 0.97214 1.02175
0.86521 0.79022 0.84997 0.77778 1.21089 1.21770 1.20532 1.19080
0.80740 0.94721 1.42783 0.89247 1.42695 1.03981 1.02276 1.91140
1.20622 0.87609 0.89237 0.98600 1.22831 0.96568 0.97297 0.97129
0.89661 1.23306 0.96497 0.98654 0.98889 1.21979 0.86588 0.93409
0.96792 0.87779 1.45513 1.15527 1.52597 1.22195 1.17295 0.81275
0.80736 0.85225 1.90900 1.79264 1.48401 1.19213 1.22436 0.97502
1.07755 0.97642 1.22431 0.97046 0.86822 0.91919 1.18102 0.94787
1.05672 0.98180 1.21167 0.99477 0.93262 0.92294 1.20991 0.93720
1.00318 1.01379 1.21335 0.97471 0.95628 0.92469 1.20703 0.99031
0.99234 0.96950 1.19282 0.94022 0.92741 0.82351 1.83738 1.46415
1.56608 1.30898 1.19967 0.81540 0.76983 0.85240 1.91069 1.77867
1.43201 1.17439 1.23471 0.95776 1.01022 0.97732 0.93078 0.80772
0.95534 0.95247 0.91113 0.88264 0.76815 0.82713 0.83857 0.84390
0.83990 0.83575 0.88589 0.91392
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 21.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.93 -29.39 13.97 55.49 0.78 -28.62 16
2 C 0.00 0.07 5.50 -17.43 -0.10 -0.03 16
3 Si 0.89 21.97 27.74 -169.99 -4.71 17.26 16
4 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16
5 H -0.29 -7.30 7.11 56.52 0.40 -6.89 16
6 H -0.28 -6.40 6.52 56.52 0.37 -6.03 16
7 C -0.24 -6.87 10.47 -15.06 -0.16 -7.03 16
8 H 0.09 2.71 8.06 -52.48 -0.42 2.28 16
9 N -0.76 -17.63 5.41 -59.91 -0.32 -17.95 16
10 C 0.17 3.05 6.10 -4.04 -0.02 3.03 16
11 C -0.12 -1.62 3.63 -89.81 -0.33 -1.95 16
12 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16
13 C -0.13 -1.42 7.39 -25.92 -0.19 -1.62 16
14 C 0.12 1.36 4.32 -67.12 -0.29 1.07 16
15 H 0.10 1.33 7.46 -51.93 -0.39 0.94 16
16 N -0.71 -7.36 5.22 -54.14 -0.28 -7.64 16
17 C 0.57 7.52 7.77 -12.59 -0.10 7.42 16
18 O -0.50 -8.99 15.06 -15.56 -0.23 -9.22 16
19 C -0.25 -2.71 6.05 -102.73 -0.62 -3.33 16
20 C 0.04 0.25 9.36 -38.16 -0.36 -0.10 16
21 C -0.17 -1.07 5.74 -106.85 -0.61 -1.68 16
22 C -0.04 -0.17 9.72 -39.43 -0.38 -0.56 16
23 C -0.15 -0.45 9.97 -40.00 -0.40 -0.84 16
24 C -0.05 -0.16 10.02 -39.51 -0.40 -0.56 16
25 C -0.14 -0.73 9.98 -39.41 -0.39 -1.13 16
26 C 0.16 1.26 6.75 -38.37 -0.26 1.01 16
27 O -0.26 -2.89 9.80 -21.05 -0.21 -3.09 16
28 C 0.52 6.91 8.13 34.16 0.28 7.19 16
29 O -0.41 -7.20 16.31 -26.44 -0.43 -7.64 16
30 C -0.14 -1.91 7.43 -25.92 -0.19 -2.10 16
31 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16
32 H 0.36 8.17 5.53 -40.82 -0.23 7.94 16
33 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16
34 H 0.03 0.55 7.84 -51.93 -0.41 0.15 16
35 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16
36 H 0.10 1.01 8.10 -51.93 -0.42 0.59 16
37 H 0.40 2.89 6.78 -40.82 -0.28 2.62 16
38 H 0.16 0.52 6.46 -52.49 -0.34 0.18 16
39 H 0.14 0.23 8.06 -52.49 -0.42 -0.20 16
40 H 0.14 0.12 8.06 -52.49 -0.42 -0.30 16
41 H 0.14 0.07 8.06 -52.49 -0.42 -0.35 16
42 H 0.15 0.55 8.06 -52.49 -0.42 0.13 16
43 H 0.10 1.33 7.89 -51.93 -0.41 0.92 16
44 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16
LS Contribution 373.80 15.07 5.63 5.63
Total: -1.00 -38.50 373.80 -9.75 -48.24
By element:
Atomic # 1 Polarization: 9.69 SS G_CDS: -5.44 Total: 4.25 kcal
Atomic # 6 Polarization: 3.30 SS G_CDS: -4.52 Total: -1.22 kcal
Atomic # 7 Polarization: -54.39 SS G_CDS: 0.17 Total: -54.22 kcal
Atomic # 8 Polarization: -19.08 SS G_CDS: -0.87 Total: -19.95 kcal
Atomic # 14 Polarization: 21.97 SS G_CDS: -4.71 Total: 17.26 kcal
Total LS contribution 5.63 Total: 5.63 kcal
Total: -38.50 -9.75 -48.24 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001700643150.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 29.485 kcal
(2) G-P(sol) polarization free energy of solvation -38.498 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.013 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.746 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.244 kcal
(6) G-S(sol) free energy of system = (1) + (5) -18.759 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.16 seconds