Wall clock time and date at job start Sat Apr 11 2020 06:32:15
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31619 * 1
3 3 Si 1.86798 * 120.00456 * 2 1
4 4 H 1.48493 * 109.47326 * 270.00545 * 3 2 1
5 5 H 1.48506 * 109.46545 * 30.00295 * 3 2 1
6 6 H 1.48498 * 109.47210 * 150.00006 * 3 2 1
7 7 C 1.38815 * 119.99884 * 180.02562 * 2 1 3
8 8 H 1.08004 * 119.99568 * 359.71829 * 7 2 1
9 9 N 1.36929 * 120.00031 * 180.02562 * 7 2 1
10 10 C 1.46506 * 119.99807 * 179.97438 * 9 7 2
11 11 C 1.53002 * 109.47042 * 179.97438 * 10 9 7
12 12 H 1.09006 * 112.84971 * 43.80598 * 11 10 9
13 13 C 1.53775 * 113.61574 * 175.00034 * 11 10 9
14 14 C 1.53780 * 87.08139 * 139.98252 * 13 11 10
15 15 H 1.08997 * 113.61372 * 220.01785 * 14 13 11
16 16 N 1.46501 * 113.61084 * 89.20454 * 14 13 11
17 17 C 1.34779 * 119.99837 * 155.00255 * 16 14 13
18 18 O 1.21618 * 120.00434 * 359.97438 * 17 16 14
19 19 C 1.47268 * 119.99706 * 179.97438 * 17 16 14
20 20 C 1.38417 * 120.59949 * 0.02562 * 19 17 16
21 21 C 1.41789 * 118.70549 * 180.02562 * 20 19 17
22 22 C 1.40319 * 120.18990 * 179.97438 * 21 20 19
23 23 C 1.36492 * 119.87173 * 180.02562 * 22 21 20
24 24 C 1.38810 * 120.47088 * 359.97438 * 23 22 21
25 25 C 1.37856 * 120.63630 * 0.02562 * 24 23 22
26 26 C 1.39070 * 119.99507 * 359.97438 * 25 24 23
27 27 O 1.35021 * 119.88358 * 179.97438 * 26 25 24
28 28 C 1.34339 * 121.43003 * 179.69195 * 27 26 25
29 29 O 1.21682 * 119.92109 * 180.31094 * 28 27 26
30 30 C 1.53777 * 113.61609 * 272.50311 * 11 10 9
31 31 H 0.97000 * 119.99517 * 359.97438 * 1 2 3
32 32 H 0.96999 * 120.00117 * 359.97438 * 9 7 2
33 33 H 1.08992 * 109.47646 * 299.99750 * 10 9 7
34 34 H 1.09000 * 109.46872 * 60.00027 * 10 9 7
35 35 H 1.08999 * 113.61760 * 254.53197 * 13 11 10
36 36 H 1.09002 * 113.61210 * 25.43856 * 13 11 10
37 37 H 0.97002 * 119.99986 * 334.99258 * 16 14 13
38 38 H 1.07995 * 120.64879 * 359.97438 * 20 19 17
39 39 H 1.07995 * 120.06366 * 359.97438 * 22 21 20
40 40 H 1.08002 * 119.75934 * 179.97438 * 23 22 21
41 41 H 1.08001 * 119.67753 * 179.97438 * 24 23 22
42 42 H 1.08000 * 120.00098 * 180.02562 * 25 24 23
43 43 H 1.09000 * 113.61321 * 334.56397 * 30 11 10
44 44 H 1.09001 * 113.61514 * 105.46904 * 30 11 10
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2503 1.6176 0.0000
4 1 2.4977 2.0464 -1.4000
5 1 1.4477 2.6526 0.7002
6 1 3.5478 1.4400 0.7000
7 6 2.0102 -1.2022 -0.0005
8 1 1.4701 -2.1375 0.0036
9 7 3.3795 -1.2022 0.0000
10 6 4.1120 -2.4710 0.0000
11 6 5.6163 -2.1915 0.0000
12 1 5.9000 -1.4015 0.6953
13 6 6.4783 -3.4590 0.1228
14 6 7.4240 -2.8207 -0.9083
15 1 7.8117 -3.5278 -1.6416
16 7 8.4719 -1.9910 -0.3087
17 6 9.6290 -1.7857 -0.9687
18 8 9.8034 -2.2896 -2.0617
19 6 10.6823 -0.9511 -0.3661
20 6 10.4972 -0.3721 0.8774
21 6 11.5376 0.4243 1.4194
22 6 11.3829 1.0266 2.6773
23 6 12.3884 1.7924 3.1926
24 6 13.5654 1.9803 2.4812
25 6 13.7389 1.3981 1.2437
26 6 12.7293 0.6134 0.6969
27 8 12.9014 0.0447 -0.5156
28 6 11.9494 -0.7239 -1.0703
29 8 12.1358 -1.2276 -2.1622
30 6 6.2107 -2.0185 -1.4076
31 1 -0.4849 0.8401 0.0004
32 1 3.8646 -0.3622 0.0004
33 1 3.8484 -3.0428 0.8897
34 1 3.8489 -3.0424 -0.8902
35 1 6.9283 -3.5873 1.1072
36 1 5.9832 -4.3604 -0.2382
37 1 8.3330 -1.5892 0.5632
38 1 9.5780 -0.5232 1.4238
39 1 10.4698 0.8851 3.2363
40 1 12.2673 2.2554 4.1608
41 1 14.3526 2.5891 2.9010
42 1 14.6590 1.5508 0.6993
43 1 5.6424 -2.5262 -2.1870
44 1 6.4446 -0.9839 -1.6587
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001700643150.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:32:15
Heat of formation + Delta-G solvation = -44.900562 kcal
Electronic energy + Delta-G solvation = -28371.247104 eV
Core-core repulsion = 24254.669063 eV
Total energy + Delta-G solvation = -4116.578041 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 342.141 amu
Computer time = 0.79 seconds
Orbital eigenvalues (eV)
-43.03220 -41.31987 -40.09536 -39.43485 -38.28368 -36.48466 -36.02393 -34.31236
-33.15533 -31.87425 -31.12126 -28.85242 -26.62943 -26.40572 -25.56596 -24.85972
-24.00185 -23.00434 -22.60594 -20.71481 -20.45886 -19.48316 -19.41337 -18.70751
-18.01978 -17.52389 -17.07383 -16.67812 -16.47180 -16.27062 -16.04257 -15.87279
-15.85616 -15.56655 -15.01641 -14.87818 -14.66141 -14.63986 -14.46562 -14.28212
-13.90105 -13.50020 -13.40565 -13.29729 -13.00077 -12.87326 -12.73798 -12.44597
-12.14814 -11.86508 -11.78259 -11.76783 -11.64083 -11.40545 -11.18479 -11.05384
-10.88951 -10.17159 -9.86584 -9.53424 -9.25812 -8.01432 -5.34352 -1.24230
-0.00814 0.48635 1.06670 1.15955 1.36891 1.43232 1.49921 1.94161
2.09602 2.49965 2.67157 2.79396 3.18581 3.23620 3.29838 3.47919
3.58200 3.68424 3.86961 3.88680 3.95505 4.12157 4.16648 4.20232
4.30568 4.37436 4.49800 4.55412 4.74473 4.86494 4.87174 4.88080
4.91518 4.96513 5.01074 5.13200 5.24448 5.25909 5.32742 5.36291
5.61399 5.64445 5.78179 5.96602 6.22975 6.23310 6.42602 7.10449
7.11412 7.87617 8.06816 9.20398
Molecular weight = 342.14amu
Principal moments of inertia in cm(-1)
A = 0.011937 B = 0.002488 C = 0.002201
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2345.097099 B =11250.265882 C =12716.546858
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.987 5.987
2 C -0.069 4.069
3 Si 0.959 3.041
4 H -0.285 1.285
5 H -0.295 1.295
6 H -0.243 1.243
7 C -0.235 4.235
8 H 0.054 0.946
9 N -0.757 5.757
10 C 0.161 3.839
11 C -0.111 4.111
12 H 0.103 0.897
13 C -0.114 4.114
14 C 0.123 3.877
15 H 0.088 0.912
16 N -0.688 5.688
17 C 0.570 3.430
18 O -0.566 6.566
19 C -0.300 4.300
20 C 0.096 3.904
21 C -0.189 4.189
22 C -0.030 4.030
23 C -0.144 4.144
24 C -0.031 4.031
25 C -0.156 4.156
26 C 0.131 3.869
27 O -0.278 6.278
28 C 0.516 3.484
29 O -0.484 6.484
30 C -0.148 4.148
31 H 0.257 0.743
32 H 0.366 0.634
33 H 0.029 0.971
34 H 0.020 0.980
35 H 0.101 0.899
36 H 0.103 0.897
37 H 0.415 0.585
38 H 0.199 0.801
39 H 0.179 0.821
40 H 0.171 0.829
41 H 0.175 0.825
42 H 0.152 0.848
43 H 0.084 0.916
44 H 0.058 0.942
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 32.712 4.469 14.457 36.043
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.637 5.637
2 C -0.261 4.261
3 Si 0.786 3.214
4 H -0.211 1.211
5 H -0.222 1.222
6 H -0.167 1.167
7 C -0.366 4.366
8 H 0.072 0.928
9 N -0.403 5.403
10 C 0.035 3.965
11 C -0.130 4.130
12 H 0.122 0.878
13 C -0.152 4.152
14 C 0.017 3.983
15 H 0.107 0.893
16 N -0.341 5.341
17 C 0.359 3.641
18 O -0.445 6.445
19 C -0.305 4.305
20 C 0.077 3.923
21 C -0.190 4.190
22 C -0.048 4.048
23 C -0.161 4.161
24 C -0.049 4.049
25 C -0.175 4.175
26 C 0.086 3.914
27 O -0.190 6.190
28 C 0.364 3.636
29 O -0.371 6.371
30 C -0.187 4.187
31 H 0.066 0.934
32 H 0.199 0.801
33 H 0.047 0.953
34 H 0.038 0.962
35 H 0.119 0.881
36 H 0.122 0.878
37 H 0.254 0.746
38 H 0.216 0.784
39 H 0.196 0.804
40 H 0.189 0.811
41 H 0.192 0.808
42 H 0.169 0.831
43 H 0.103 0.897
44 H 0.077 0.923
Dipole moment (debyes) X Y Z Total
from point charges 32.899 3.754 13.043 35.588
hybrid contribution -0.327 0.955 -0.557 1.153
sum 32.572 4.709 12.486 35.200
Atomic orbital electron populations
1.69902 1.07287 1.26690 1.59870 1.25584 0.96185 1.01535 1.02747
0.85352 0.78950 0.79260 0.77878 1.21136 1.22198 1.16666 1.19070
0.83041 0.93378 1.41096 0.92841 1.42706 1.02273 1.04407 1.90889
1.20825 0.90425 0.87156 0.98078 1.22778 0.93170 0.99636 0.97396
0.87844 1.23223 0.94742 0.97264 0.99979 1.21811 0.86280 0.93041
0.97151 0.89343 1.45290 1.14283 1.51996 1.22568 1.17632 0.81985
0.80030 0.84493 1.90864 1.80501 1.51115 1.22013 1.21893 0.96555
1.12062 1.00039 1.22899 0.97845 0.82326 0.89266 1.18336 0.94231
1.06886 0.99533 1.21624 1.00937 0.91530 0.90699 1.21487 0.92924
0.99304 1.02401 1.21825 0.98391 0.93805 0.90886 1.20993 0.98913
0.99436 0.98131 1.19900 0.95990 0.93815 0.81652 1.83656 1.46200
1.56446 1.32679 1.20359 0.82383 0.76141 0.84754 1.91009 1.79406
1.46430 1.20286 1.23496 0.96798 1.00691 0.97721 0.93398 0.80058
0.95316 0.96167 0.88095 0.87830 0.74591 0.78368 0.80396 0.81109
0.80781 0.83068 0.89719 0.92284
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.99 -63.39 13.97 21.65 0.30 -63.09 16
2 C -0.07 -4.08 5.50 84.86 0.47 -3.61 16
3 Si 0.96 44.58 27.74 68.60 1.90 46.48 16
4 H -0.28 -13.21 7.11 99.48 0.71 -12.51 16
5 H -0.30 -13.86 7.11 99.48 0.71 -13.15 16
6 H -0.24 -9.72 6.52 99.48 0.65 -9.07 16
7 C -0.23 -13.34 10.47 84.04 0.88 -12.46 16
8 H 0.05 3.35 8.06 -2.91 -0.02 3.33 16
9 N -0.76 -34.16 5.41 -343.45 -1.86 -36.01 16
10 C 0.16 5.65 6.10 86.38 0.53 6.17 16
11 C -0.11 -2.69 3.63 -10.27 -0.04 -2.73 16
12 H 0.10 2.19 8.14 -2.38 -0.02 2.17 16
13 C -0.11 -2.04 7.39 31.12 0.23 -1.81 16
14 C 0.12 2.69 4.32 45.52 0.20 2.89 16
15 H 0.09 2.30 7.46 -2.39 -0.02 2.28 16
16 N -0.69 -12.97 5.22 -443.45 -2.31 -15.29 16
17 C 0.57 15.35 7.77 86.62 0.67 16.02 16
18 O -0.57 -21.79 15.06 15.82 0.24 -21.55 16
19 C -0.30 -6.59 6.05 -18.64 -0.11 -6.70 16
20 C 0.10 0.98 9.36 23.19 0.22 1.20 16
21 C -0.19 -1.79 5.74 -21.31 -0.12 -1.91 16
22 C -0.03 -0.06 9.72 22.37 0.22 0.16 16
23 C -0.14 0.01 9.97 22.00 0.22 0.23 16
24 C -0.03 -0.05 10.02 22.32 0.22 0.18 16
25 C -0.16 -1.28 9.98 22.38 0.22 -1.06 16
26 C 0.13 1.90 6.75 23.06 0.16 2.05 16
27 O -0.28 -6.50 9.80 13.53 0.13 -6.36 16
28 C 0.52 15.02 8.13 70.04 0.57 15.59 16
29 O -0.48 -19.00 16.31 25.97 0.42 -18.58 16
30 C -0.15 -3.84 7.43 31.12 0.23 -3.61 16
31 H 0.26 15.71 8.31 -92.71 -0.77 14.94 16
32 H 0.37 15.51 5.53 -92.71 -0.51 15.00 16
33 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16
34 H 0.02 0.75 7.84 -2.39 -0.02 0.74 16
35 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16
36 H 0.10 1.83 8.10 -2.39 -0.02 1.81 16
37 H 0.42 4.25 6.78 -92.71 -0.63 3.62 16
38 H 0.20 0.11 6.46 -2.91 -0.02 0.09 16
39 H 0.18 -0.84 8.06 -2.91 -0.02 -0.87 16
40 H 0.17 -0.99 8.06 -2.91 -0.02 -1.02 16
41 H 0.17 -0.82 8.06 -2.91 -0.02 -0.85 16
42 H 0.15 0.97 8.06 -2.91 -0.02 0.95 16
43 H 0.08 2.37 7.89 -2.39 -0.02 2.35 16
44 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16
Total: -1.00 -93.56 373.80 3.45 -90.11
By element:
Atomic # 1 Polarization: 13.82 SS G_CDS: -0.14 Total: 13.68 kcal
Atomic # 6 Polarization: 5.85 SS G_CDS: 4.76 Total: 10.60 kcal
Atomic # 7 Polarization: -110.52 SS G_CDS: -3.87 Total: -114.39 kcal
Atomic # 8 Polarization: -47.29 SS G_CDS: 0.79 Total: -46.49 kcal
Atomic # 14 Polarization: 44.58 SS G_CDS: 1.90 Total: 46.48 kcal
Total: -93.56 3.45 -90.11 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001700643150.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 45.207 kcal
(2) G-P(sol) polarization free energy of solvation -93.556 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.349 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.449 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.108 kcal
(6) G-S(sol) free energy of system = (1) + (5) -44.901 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.79 seconds