Wall clock time and date at job start Sat Apr 11 2020 06:31:13
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31635 * 1
3 3 Si 1.86791 * 120.00227 * 2 1
4 4 H 1.48496 * 109.47528 * 269.99788 * 3 2 1
5 5 H 1.48500 * 109.47448 * 30.00328 * 3 2 1
6 6 H 1.48506 * 109.47068 * 149.99870 * 3 2 1
7 7 C 1.38800 * 119.99674 * 179.97438 * 2 1 3
8 8 H 1.08000 * 120.00159 * 179.97438 * 7 2 1
9 9 S 1.76202 * 120.00162 * 0.02562 * 7 2 1
10 10 C 1.81001 * 100.00203 * 179.97438 * 9 7 2
11 11 C 1.50698 * 109.47279 * 179.97438 * 10 9 7
12 12 O 1.21280 * 119.99679 * 359.97438 * 11 10 9
13 13 N 1.34768 * 120.00045 * 180.02562 * 11 10 9
14 14 C 1.46503 * 120.00164 * 179.97438 * 13 11 10
15 15 C 1.53950 * 113.74146 * 106.26045 * 14 13 11
16 16 N 1.47805 * 86.03824 * 90.88395 * 15 14 13
17 17 C 1.34776 * 134.45584 * 204.64698 * 16 15 14
18 18 O 1.21281 * 120.00225 * 179.86905 * 17 16 15
19 19 C 1.50705 * 120.00221 * 359.86265 * 17 16 15
20 20 O 1.42900 * 109.47101 * 180.02562 * 19 17 16
21 21 C 1.42897 * 113.99732 * 180.02562 * 20 19 17
22 22 C 1.54268 * 110.03250 * 267.90825 * 21 20 19
23 23 C 1.54966 * 104.16267 * 217.13639 * 22 21 20
24 24 C 1.54891 * 102.77183 * 37.88508 * 23 22 21
25 25 C 1.53876 * 110.03361 * 150.69094 * 21 20 19
26 26 C 1.47582 * 91.05413 * 24.54887 * 16 15 14
27 27 H 0.96996 * 119.99559 * 359.97438 * 1 2 3
28 28 H 1.09004 * 109.46887 * 60.00187 * 10 9 7
29 29 H 1.08997 * 109.47176 * 300.00056 * 10 9 7
30 30 H 0.97006 * 120.00313 * 0.02562 * 13 11 10
31 31 H 1.09002 * 112.94232 * 334.66719 * 14 13 11
32 32 H 1.08999 * 113.76704 * 205.15172 * 15 14 13
33 33 H 1.09002 * 113.76463 * 336.53966 * 15 14 13
34 34 H 1.09000 * 109.46504 * 300.00526 * 19 17 16
35 35 H 1.09001 * 109.46554 * 59.99813 * 19 17 16
36 36 H 1.09005 * 110.02075 * 29.29309 * 21 20 19
37 37 H 1.09002 * 110.48310 * 335.78520 * 22 21 20
38 38 H 1.09007 * 110.48765 * 98.42408 * 22 21 20
39 39 H 1.08992 * 110.71632 * 279.57310 * 23 22 21
40 40 H 1.08992 * 110.92312 * 156.29325 * 23 22 21
41 41 H 1.08999 * 110.48210 * 203.40266 * 24 23 22
42 42 H 1.09006 * 110.59694 * 80.82233 * 24 23 22
43 43 H 1.09000 * 110.02697 * 238.56706 * 25 21 20
44 44 H 1.08999 * 110.03055 * 359.95212 * 25 21 20
45 45 H 1.08999 * 113.77186 * 221.15323 * 26 16 15
46 46 H 1.09004 * 113.76624 * 89.74800 * 26 16 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3164 0.0000 0.0000
3 14 2.2504 1.6176 0.0000
4 1 2.4980 2.0463 -1.4000
5 1 1.4480 2.6526 0.7001
6 1 3.5480 1.4400 0.7001
7 6 2.0103 -1.2021 0.0005
8 1 3.0903 -1.2022 0.0001
9 16 1.1292 -2.7280 0.0005
10 6 2.5157 -3.8916 0.0005
11 6 1.9872 -5.3028 0.0012
12 8 0.7909 -5.5023 0.0021
13 7 2.8438 -6.3432 0.0018
14 6 2.3301 -7.7152 0.0030
15 6 2.4819 -8.4351 -1.3493
16 7 3.7877 -8.9019 -0.8379
17 6 4.9383 -9.3033 -1.4138
18 8 5.8770 -9.6395 -0.7234
19 6 5.0583 -9.3344 -2.9157
20 8 6.3622 -9.7920 -3.2800
21 6 6.5818 -9.8583 -4.6904
22 6 6.2299 -11.2659 -5.2144
23 6 7.2934 -11.5404 -6.3076
24 6 8.5736 -10.9093 -5.7061
25 6 8.0712 -9.6313 -5.0032
26 6 3.3269 -8.7499 0.5559
27 1 -0.4849 0.8400 0.0004
28 1 3.1243 -3.7315 0.8906
29 1 3.1243 -3.7315 -0.8894
30 1 3.8007 -6.1837 0.0022
31 1 1.3315 -7.7946 0.4328
32 1 1.7590 -9.2359 -1.5043
33 1 2.5585 -7.7588 -2.2008
34 1 4.3084 -10.0106 -3.3262
35 1 4.9003 -8.3320 -3.3136
36 1 5.9751 -9.1085 -5.1983
37 1 6.3075 -12.0014 -4.4137
38 1 5.2284 -11.2735 -5.6448
39 1 7.0222 -11.0482 -7.2415
40 1 7.4261 -12.6112 -6.4614
41 1 9.2817 -10.6573 -6.4954
42 1 9.0324 -11.5860 -4.9851
43 1 8.1873 -8.7718 -5.6635
44 1 8.6264 -9.4697 -4.0792
45 1 4.0770 -8.3246 1.2227
46 1 2.8527 -9.6435 0.9617
RHF calculation, no. of doubly occupied orbitals= 62
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001737980486.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:31:13
Heat of formation + Delta-G solvation = -87.434499 kcal
Electronic energy + Delta-G solvation = -26502.881960 eV
Core-core repulsion = 22519.903461 eV
Total energy + Delta-G solvation = -3982.978500 eV
No. of doubly occupied orbitals = 62
Molecular weight
(most abundant/longest-lived isotopes) = 342.145 amu
Computer time = 0.56 seconds
Orbital eigenvalues (eV)
-40.87649 -39.57693 -38.85734 -37.73209 -36.08084 -33.60396 -32.46711 -30.68209
-29.32962 -29.08797 -28.20075 -26.99200 -26.19477 -25.51626 -22.08829 -21.18301
-20.78562 -20.62363 -19.33673 -17.96526 -17.61766 -17.32439 -16.90634 -16.29123
-16.19874 -15.99583 -15.67415 -15.23933 -14.94713 -14.83737 -14.61313 -14.01042
-13.75533 -13.72861 -13.43192 -13.30032 -13.16292 -12.80294 -12.57289 -12.36483
-12.29105 -11.96747 -11.89093 -11.54260 -11.51552 -11.47503 -11.09521 -11.06329
-11.04743 -10.97791 -10.79965 -9.99910 -9.96530 -9.86276 -9.61008 -9.20061
-9.10121 -9.01316 -8.30231 -6.55358 -6.25848 -3.96890 2.15989 2.33810
2.86196 2.88757 3.19957 3.24182 3.28220 3.35740 3.58154 4.01662
4.13239 4.15116 4.16567 4.23547 4.51654 4.56970 4.70228 4.76445
4.82753 4.96077 5.00501 5.02830 5.03104 5.07131 5.09672 5.16199
5.21939 5.25350 5.27744 5.36848 5.42737 5.46024 5.48868 5.60856
5.69626 5.71836 5.78836 5.80893 5.90310 6.07407 6.44492 6.77188
7.28351 7.52475 7.56345 7.86102 8.31359 8.43795 9.19851 10.81534
Molecular weight = 342.14amu
Principal moments of inertia in cm(-1)
A = 0.013175 B = 0.001920 C = 0.001752
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2124.759108 B =14576.815541 C =15975.162302
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.867 5.867
2 C 0.074 3.926
3 Si 0.919 3.081
4 H -0.277 1.277
5 H -0.282 1.282
6 H -0.272 1.272
7 C -0.536 4.536
8 H 0.073 0.927
9 S -0.058 6.058
10 C -0.155 4.155
11 C 0.537 3.463
12 O -0.513 6.513
13 N -0.721 5.721
14 C 0.116 3.884
15 C 0.083 3.917
16 N -0.648 5.648
17 C 0.537 3.463
18 O -0.520 6.520
19 C 0.050 3.950
20 O -0.356 6.356
21 C 0.082 3.918
22 C -0.149 4.149
23 C -0.123 4.123
24 C -0.123 4.123
25 C -0.124 4.124
26 C 0.104 3.896
27 H 0.269 0.731
28 H 0.091 0.909
29 H 0.090 0.910
30 H 0.402 0.598
31 H 0.123 0.877
32 H 0.100 0.900
33 H 0.089 0.911
34 H 0.078 0.922
35 H 0.080 0.920
36 H 0.066 0.934
37 H 0.078 0.922
38 H 0.067 0.933
39 H 0.068 0.932
40 H 0.069 0.931
41 H 0.068 0.932
42 H 0.069 0.931
43 H 0.073 0.927
44 H 0.081 0.919
45 H 0.089 0.911
46 H 0.100 0.900
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 11.416 -23.420 -9.751 27.819
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.502 5.502
2 C -0.136 4.136
3 Si 0.745 3.255
4 H -0.203 1.203
5 H -0.207 1.207
6 H -0.197 1.197
7 C -0.685 4.685
8 H 0.091 0.909
9 S 0.168 5.832
10 C -0.305 4.305
11 C 0.324 3.676
12 O -0.386 6.386
13 N -0.375 5.375
14 C 0.008 3.992
15 C -0.041 4.041
16 N -0.387 5.387
17 C 0.326 3.674
18 O -0.395 6.395
19 C -0.030 4.030
20 O -0.274 6.274
21 C 0.024 3.976
22 C -0.187 4.187
23 C -0.161 4.161
24 C -0.161 4.161
25 C -0.162 4.162
26 C -0.019 4.019
27 H 0.079 0.921
28 H 0.110 0.890
29 H 0.109 0.891
30 H 0.237 0.763
31 H 0.141 0.859
32 H 0.118 0.882
33 H 0.107 0.893
34 H 0.096 0.904
35 H 0.098 0.902
36 H 0.084 0.916
37 H 0.097 0.903
38 H 0.086 0.914
39 H 0.087 0.913
40 H 0.087 0.913
41 H 0.086 0.914
42 H 0.087 0.913
43 H 0.092 0.908
44 H 0.100 0.900
45 H 0.108 0.892
46 H 0.118 0.882
Dipole moment (debyes) X Y Z Total
from point charges 10.107 -23.922 -9.337 27.597
hybrid contribution 2.148 1.363 -0.310 2.563
sum 12.255 -22.559 -9.646 27.425
Atomic orbital electron populations
1.70013 1.05940 1.27512 1.46781 1.24992 0.95042 0.99052 0.94473
0.86162 0.79434 0.81514 0.78368 1.20261 1.20724 1.19677 1.22864
0.94926 0.91595 1.59080 0.90890 1.85372 1.04683 0.96350 1.96745
1.23542 1.06767 0.95072 1.05129 1.20378 0.86452 0.86221 0.74579
1.90710 1.15239 1.85491 1.47172 1.45721 1.10183 1.04095 1.77477
1.22312 0.99393 0.82103 0.95401 1.23949 0.83075 0.97526 0.99516
1.50114 1.12074 1.66987 1.09517 1.19928 0.81427 0.76476 0.89570
1.90745 1.37457 1.46658 1.64643 1.22137 0.87465 1.00621 0.92798
1.88078 1.29690 1.86958 1.22679 1.22922 0.97219 0.96556 0.80901
1.22941 0.99128 0.97557 0.99070 1.22440 0.94913 1.00918 0.97822
1.22339 0.97401 0.96719 0.99644 1.22227 0.94182 0.98330 1.01448
1.23586 0.95475 0.97914 0.84919 0.92147 0.89026 0.89126 0.76346
0.85895 0.88248 0.89266 0.90430 0.90218 0.91573 0.90298 0.91438
0.91324 0.91252 0.91368 0.91266 0.90797 0.90038 0.89242 0.88153
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.87 -25.65 13.22 55.49 0.73 -24.92 16
2 C 0.07 2.07 5.49 -17.43 -0.10 1.97 16
3 Si 0.92 21.10 29.55 -169.99 -5.02 16.07 16
4 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16
5 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16
6 H -0.27 -6.09 7.11 56.52 0.40 -5.68 16
7 C -0.54 -14.95 9.50 30.94 0.29 -14.65 16
8 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16
9 S -0.06 -1.52 20.57 -107.50 -2.21 -3.73 16
10 C -0.15 -2.94 6.16 36.00 0.22 -2.72 16
11 C 0.54 9.03 7.85 -10.99 -0.09 8.94 16
12 O -0.51 -10.47 15.48 5.56 0.09 -10.38 16
13 N -0.72 -8.48 5.37 -55.34 -0.30 -8.78 16
14 C 0.12 1.07 4.40 -70.14 -0.31 0.76 16
15 C 0.08 0.63 8.43 -2.84 -0.02 0.60 16
16 N -0.65 -6.04 3.61 -178.32 -0.64 -6.68 16
17 C 0.54 6.33 8.13 -10.98 -0.09 6.24 16
18 O -0.52 -8.44 17.23 -14.35 -0.25 -8.68 16
19 C 0.05 0.45 6.01 36.01 0.22 0.67 16
20 O -0.36 -3.94 9.43 -55.14 -0.52 -4.46 16
21 C 0.08 0.65 3.38 -25.61 -0.09 0.57 16
22 C -0.15 -1.02 6.56 -25.03 -0.16 -1.18 16
23 C -0.12 -0.70 6.91 -24.70 -0.17 -0.88 16
24 C -0.12 -0.77 6.83 -25.07 -0.17 -0.94 16
25 C -0.12 -0.93 6.61 -25.62 -0.17 -1.10 16
26 C 0.10 0.85 8.58 -2.96 -0.03 0.82 16
27 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16
28 H 0.09 1.63 8.14 -51.91 -0.42 1.20 16
29 H 0.09 1.59 8.14 -51.92 -0.42 1.17 16
30 H 0.40 4.13 8.74 -40.82 -0.36 3.77 16
31 H 0.12 1.20 7.51 -51.93 -0.39 0.81 16
32 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16
33 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16
34 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16
35 H 0.08 0.60 8.10 -51.93 -0.42 0.18 16
36 H 0.07 0.44 7.81 -51.93 -0.41 0.04 16
37 H 0.08 0.63 8.08 -51.93 -0.42 0.21 16
38 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16
39 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16
40 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16
41 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16
42 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16
43 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16
44 H 0.08 0.72 7.95 -51.93 -0.41 0.31 16
45 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16
46 H 0.10 0.63 8.14 -51.93 -0.42 0.20 16
LS Contribution 400.78 15.07 6.04 6.04
Total: -1.00 -36.56 400.78 -10.19 -46.75
By element:
Atomic # 1 Polarization: 7.11 SS G_CDS: -7.45 Total: -0.34 kcal
Atomic # 6 Polarization: -0.23 SS G_CDS: -0.66 Total: -0.88 kcal
Atomic # 7 Polarization: -40.18 SS G_CDS: -0.21 Total: -40.38 kcal
Atomic # 8 Polarization: -22.84 SS G_CDS: -0.68 Total: -23.52 kcal
Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.07 kcal
Atomic # 16 Polarization: -1.52 SS G_CDS: -2.21 Total: -3.73 kcal
Total LS contribution 6.04 Total: 6.04 kcal
Total: -36.56 -10.19 -46.75 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001737980486.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -40.688 kcal
(2) G-P(sol) polarization free energy of solvation -36.558 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.245 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.189 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.747 kcal
(6) G-S(sol) free energy of system = (1) + (5) -87.434 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.56 seconds