Wall clock time and date at job start Sat Apr 11 2020 06:31:12
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31635 * 1
3 3 Si 1.86791 * 120.00227 * 2 1
4 4 H 1.48496 * 109.47528 * 269.99788 * 3 2 1
5 5 H 1.48500 * 109.47448 * 30.00328 * 3 2 1
6 6 H 1.48506 * 109.47068 * 149.99870 * 3 2 1
7 7 C 1.38800 * 119.99674 * 179.97438 * 2 1 3
8 8 H 1.08000 * 120.00159 * 179.97438 * 7 2 1
9 9 S 1.76202 * 120.00162 * 0.02562 * 7 2 1
10 10 C 1.81001 * 100.00203 * 179.97438 * 9 7 2
11 11 C 1.50698 * 109.47279 * 179.97438 * 10 9 7
12 12 O 1.21280 * 119.99679 * 359.97438 * 11 10 9
13 13 N 1.34768 * 120.00045 * 180.02562 * 11 10 9
14 14 C 1.46503 * 120.00164 * 179.97438 * 13 11 10
15 15 C 1.53950 * 113.74146 * 106.26045 * 14 13 11
16 16 N 1.47805 * 86.03824 * 90.88395 * 15 14 13
17 17 C 1.34776 * 134.45584 * 204.64698 * 16 15 14
18 18 O 1.21281 * 120.00225 * 179.86905 * 17 16 15
19 19 C 1.50705 * 120.00221 * 359.86265 * 17 16 15
20 20 O 1.42900 * 109.47101 * 180.02562 * 19 17 16
21 21 C 1.42897 * 113.99732 * 180.02562 * 20 19 17
22 22 C 1.54268 * 110.03250 * 267.90825 * 21 20 19
23 23 C 1.54966 * 104.16267 * 217.13639 * 22 21 20
24 24 C 1.54891 * 102.77183 * 37.88508 * 23 22 21
25 25 C 1.53876 * 110.03361 * 150.69094 * 21 20 19
26 26 C 1.47582 * 91.05413 * 24.54887 * 16 15 14
27 27 H 0.96996 * 119.99559 * 359.97438 * 1 2 3
28 28 H 1.09004 * 109.46887 * 60.00187 * 10 9 7
29 29 H 1.08997 * 109.47176 * 300.00056 * 10 9 7
30 30 H 0.97006 * 120.00313 * 0.02562 * 13 11 10
31 31 H 1.09002 * 112.94232 * 334.66719 * 14 13 11
32 32 H 1.08999 * 113.76704 * 205.15172 * 15 14 13
33 33 H 1.09002 * 113.76463 * 336.53966 * 15 14 13
34 34 H 1.09000 * 109.46504 * 300.00526 * 19 17 16
35 35 H 1.09001 * 109.46554 * 59.99813 * 19 17 16
36 36 H 1.09005 * 110.02075 * 29.29309 * 21 20 19
37 37 H 1.09002 * 110.48310 * 335.78520 * 22 21 20
38 38 H 1.09007 * 110.48765 * 98.42408 * 22 21 20
39 39 H 1.08992 * 110.71632 * 279.57310 * 23 22 21
40 40 H 1.08992 * 110.92312 * 156.29325 * 23 22 21
41 41 H 1.08999 * 110.48210 * 203.40266 * 24 23 22
42 42 H 1.09006 * 110.59694 * 80.82233 * 24 23 22
43 43 H 1.09000 * 110.02697 * 238.56706 * 25 21 20
44 44 H 1.08999 * 110.03055 * 359.95212 * 25 21 20
45 45 H 1.08999 * 113.77186 * 221.15323 * 26 16 15
46 46 H 1.09004 * 113.76624 * 89.74800 * 26 16 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3164 0.0000 0.0000
3 14 2.2504 1.6176 0.0000
4 1 2.4980 2.0463 -1.4000
5 1 1.4480 2.6526 0.7001
6 1 3.5480 1.4400 0.7001
7 6 2.0103 -1.2021 0.0005
8 1 3.0903 -1.2022 0.0001
9 16 1.1292 -2.7280 0.0005
10 6 2.5157 -3.8916 0.0005
11 6 1.9872 -5.3028 0.0012
12 8 0.7909 -5.5023 0.0021
13 7 2.8438 -6.3432 0.0018
14 6 2.3301 -7.7152 0.0030
15 6 2.4819 -8.4351 -1.3493
16 7 3.7877 -8.9019 -0.8379
17 6 4.9383 -9.3033 -1.4138
18 8 5.8770 -9.6395 -0.7234
19 6 5.0583 -9.3344 -2.9157
20 8 6.3622 -9.7920 -3.2800
21 6 6.5818 -9.8583 -4.6904
22 6 6.2299 -11.2659 -5.2144
23 6 7.2934 -11.5404 -6.3076
24 6 8.5736 -10.9093 -5.7061
25 6 8.0712 -9.6313 -5.0032
26 6 3.3269 -8.7499 0.5559
27 1 -0.4849 0.8400 0.0004
28 1 3.1243 -3.7315 0.8906
29 1 3.1243 -3.7315 -0.8894
30 1 3.8007 -6.1837 0.0022
31 1 1.3315 -7.7946 0.4328
32 1 1.7590 -9.2359 -1.5043
33 1 2.5585 -7.7588 -2.2008
34 1 4.3084 -10.0106 -3.3262
35 1 4.9003 -8.3320 -3.3136
36 1 5.9751 -9.1085 -5.1983
37 1 6.3075 -12.0014 -4.4137
38 1 5.2284 -11.2735 -5.6448
39 1 7.0222 -11.0482 -7.2415
40 1 7.4261 -12.6112 -6.4614
41 1 9.2817 -10.6573 -6.4954
42 1 9.0324 -11.5860 -4.9851
43 1 8.1873 -8.7718 -5.6635
44 1 8.6264 -9.4697 -4.0792
45 1 4.0770 -8.3246 1.2227
46 1 2.8527 -9.6435 0.9617
RHF calculation, no. of doubly occupied orbitals= 62
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001737980486.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:31:12
Heat of formation + Delta-G solvation = -112.557061 kcal
Electronic energy + Delta-G solvation = -26503.971356 eV
Core-core repulsion = 22519.903461 eV
Total energy + Delta-G solvation = -3984.067896 eV
No. of doubly occupied orbitals = 62
Molecular weight
(most abundant/longest-lived isotopes) = 342.145 amu
Computer time = 0.64 seconds
Orbital eigenvalues (eV)
-41.74078 -40.47429 -39.79073 -38.68652 -36.73577 -34.76563 -34.57071 -31.69683
-30.44042 -29.66456 -28.93374 -27.73772 -27.58259 -26.86894 -23.05421 -21.80203
-21.66348 -21.34071 -20.13418 -19.83772 -18.38752 -18.14675 -17.92886 -17.26581
-17.10523 -16.89836 -16.87067 -16.44054 -16.22664 -16.09606 -15.64315 -15.14699
-14.77186 -14.60110 -14.41870 -14.27980 -14.14799 -14.00325 -13.53641 -13.43646
-13.16038 -12.95127 -12.92619 -12.88010 -12.61602 -12.50337 -12.25527 -12.05048
-11.96907 -11.73338 -11.55357 -11.51283 -11.13988 -11.02777 -10.88917 -10.61213
-10.27837 -10.21866 -9.85090 -8.64864 -8.34678 -6.11641 1.26314 1.41294
1.42159 1.46342 1.51584 1.56056 1.57021 2.17898 2.27904 2.70889
2.99607 3.29691 3.31392 3.45698 3.63668 3.65052 3.82154 3.93084
4.00812 4.10880 4.14723 4.28797 4.30018 4.31526 4.40669 4.50682
4.52241 4.54327 4.58827 4.60855 4.68967 4.72304 4.76369 4.80940
4.92393 5.01143 5.10875 5.19098 5.25598 5.42634 5.42944 5.45380
6.15937 6.20119 6.39139 6.52113 7.02115 7.07306 7.17750 8.74225
Molecular weight = 342.14amu
Principal moments of inertia in cm(-1)
A = 0.013175 B = 0.001920 C = 0.001752
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2124.759108 B =14576.815541 C =15975.162302
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.909 5.909
2 C 0.015 3.985
3 Si 0.995 3.005
4 H -0.268 1.268
5 H -0.278 1.278
6 H -0.261 1.261
7 C -0.548 4.548
8 H 0.080 0.920
9 S -0.141 6.141
10 C -0.134 4.134
11 C 0.545 3.455
12 O -0.553 6.553
13 N -0.700 5.700
14 C 0.106 3.894
15 C 0.094 3.906
16 N -0.645 5.645
17 C 0.532 3.468
18 O -0.576 6.576
19 C 0.051 3.949
20 O -0.388 6.388
21 C 0.075 3.925
22 C -0.148 4.148
23 C -0.120 4.120
24 C -0.124 4.124
25 C -0.128 4.128
26 C 0.107 3.893
27 H 0.271 0.729
28 H 0.106 0.894
29 H 0.108 0.892
30 H 0.412 0.588
31 H 0.123 0.877
32 H 0.132 0.868
33 H 0.093 0.907
34 H 0.103 0.897
35 H 0.097 0.903
36 H 0.082 0.918
37 H 0.062 0.938
38 H 0.082 0.918
39 H 0.081 0.919
40 H 0.075 0.925
41 H 0.080 0.920
42 H 0.058 0.942
43 H 0.086 0.914
44 H 0.059 0.941
45 H 0.082 0.918
46 H 0.127 0.873
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 12.282 -23.958 -11.033 29.096
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.545 5.545
2 C -0.190 4.190
3 Si 0.817 3.183
4 H -0.193 1.193
5 H -0.203 1.203
6 H -0.185 1.185
7 C -0.696 4.696
8 H 0.099 0.901
9 S 0.086 5.914
10 C -0.285 4.285
11 C 0.331 3.669
12 O -0.430 6.430
13 N -0.353 5.353
14 C 0.000 4.000
15 C -0.029 4.029
16 N -0.383 5.383
17 C 0.322 3.678
18 O -0.455 6.455
19 C -0.029 4.029
20 O -0.307 6.307
21 C 0.018 3.982
22 C -0.185 4.185
23 C -0.157 4.157
24 C -0.161 4.161
25 C -0.165 4.165
26 C -0.015 4.015
27 H 0.080 0.920
28 H 0.125 0.875
29 H 0.126 0.874
30 H 0.248 0.752
31 H 0.141 0.859
32 H 0.149 0.851
33 H 0.111 0.889
34 H 0.121 0.879
35 H 0.115 0.885
36 H 0.100 0.900
37 H 0.080 0.920
38 H 0.100 0.900
39 H 0.099 0.901
40 H 0.094 0.906
41 H 0.099 0.901
42 H 0.077 0.923
43 H 0.104 0.896
44 H 0.078 0.922
45 H 0.101 0.899
46 H 0.145 0.855
Dipole moment (debyes) X Y Z Total
from point charges 10.980 -24.491 -10.628 28.867
hybrid contribution 1.903 1.415 0.114 2.374
sum 12.883 -23.076 -10.515 28.443
Atomic orbital electron populations
1.70167 1.07822 1.28590 1.47950 1.26072 0.95958 1.03160 0.93801
0.84997 0.78186 0.76300 0.78785 1.19298 1.20298 1.18466 1.23207
0.95314 0.92245 1.58856 0.90138 1.85473 1.10045 0.98862 1.97034
1.23394 1.03771 0.94683 1.06676 1.19913 0.86146 0.86254 0.74614
1.90703 1.16875 1.85853 1.49570 1.45461 1.10055 1.04275 1.75466
1.22515 0.99568 0.80573 0.97351 1.24086 0.82446 0.98074 0.98258
1.50187 1.12117 1.65732 1.10231 1.20453 0.81144 0.75627 0.90586
1.90716 1.39400 1.49457 1.65958 1.22253 0.87475 1.02148 0.90978
1.88052 1.30848 1.87322 1.24468 1.23137 0.97609 0.97698 0.79754
1.22926 1.00330 0.96377 0.98897 1.22452 0.93990 1.01426 0.97852
1.22351 0.98060 0.96021 0.99714 1.22279 0.93985 0.99478 1.00803
1.23710 0.94852 0.98401 0.84546 0.91976 0.87549 0.87363 0.75182
0.85936 0.85060 0.88854 0.87929 0.88524 0.89993 0.91963 0.89960
0.90055 0.90635 0.90097 0.92280 0.89564 0.92239 0.89907 0.85524
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.91 -54.66 13.22 21.65 0.29 -54.38 16
2 C 0.02 0.85 5.49 84.86 0.47 1.31 16
3 Si 1.00 42.97 29.55 68.60 2.03 45.00 16
4 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16
5 H -0.28 -11.70 7.11 99.48 0.71 -10.99 16
6 H -0.26 -10.65 7.11 99.48 0.71 -9.94 16
7 C -0.55 -30.64 9.50 67.95 0.65 -29.99 16
8 H 0.08 4.20 7.80 -2.91 -0.02 4.18 16
9 S -0.14 -7.52 20.57 -56.49 -1.16 -8.68 16
10 C -0.13 -4.98 6.16 71.24 0.44 -4.54 16
11 C 0.54 17.74 7.85 87.66 0.69 18.43 16
12 O -0.55 -22.49 15.48 -3.03 -0.05 -22.53 16
13 N -0.70 -15.12 5.37 -447.38 -2.40 -17.53 16
14 C 0.11 1.73 4.40 46.75 0.21 1.93 16
15 C 0.09 1.12 8.43 86.44 0.73 1.85 16
16 N -0.65 -10.57 3.61 -836.48 -3.02 -13.59 16
17 C 0.53 11.91 8.13 87.66 0.71 12.62 16
18 O -0.58 -18.83 17.23 16.00 0.28 -18.55 16
19 C 0.05 0.83 6.01 71.24 0.43 1.26 16
20 O -0.39 -8.39 9.43 -129.94 -1.23 -9.61 16
21 C 0.08 1.11 3.38 31.32 0.11 1.21 16
22 C -0.15 -1.79 6.56 31.70 0.21 -1.58 16
23 C -0.12 -1.16 6.91 31.91 0.22 -0.94 16
24 C -0.12 -1.44 6.83 31.67 0.22 -1.22 16
25 C -0.13 -1.83 6.61 31.32 0.21 -1.63 16
26 C 0.11 1.52 8.58 86.49 0.74 2.26 16
27 H 0.27 15.15 8.31 -92.71 -0.77 14.38 16
28 H 0.11 3.64 8.14 -2.39 -0.02 3.62 16
29 H 0.11 3.64 8.14 -2.40 -0.02 3.62 16
30 H 0.41 7.55 8.74 -92.70 -0.81 6.74 16
31 H 0.12 2.15 7.51 -2.39 -0.02 2.13 16
32 H 0.13 0.85 8.14 -2.39 -0.02 0.83 16
33 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16
34 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16
35 H 0.10 1.23 8.10 -2.39 -0.02 1.21 16
36 H 0.08 0.91 7.81 -2.38 -0.02 0.89 16
37 H 0.06 0.96 8.08 -2.39 -0.02 0.94 16
38 H 0.08 0.74 8.14 -2.38 -0.02 0.72 16
39 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16
40 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16
41 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16
42 H 0.06 0.79 8.14 -2.38 -0.02 0.77 16
43 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16
44 H 0.06 1.10 7.95 -2.39 -0.02 1.08 16
45 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16
46 H 0.13 1.21 8.14 -2.39 -0.02 1.19 16
Total: -1.00 -82.46 400.78 0.91 -81.54
By element:
Atomic # 1 Polarization: 17.18 SS G_CDS: 0.17 Total: 17.35 kcal
Atomic # 6 Polarization: -5.04 SS G_CDS: 6.01 Total: 0.98 kcal
Atomic # 7 Polarization: -80.36 SS G_CDS: -5.14 Total: -85.50 kcal
Atomic # 8 Polarization: -49.70 SS G_CDS: -1.00 Total: -50.70 kcal
Atomic # 14 Polarization: 42.97 SS G_CDS: 2.03 Total: 45.00 kcal
Atomic # 16 Polarization: -7.52 SS G_CDS: -1.16 Total: -8.68 kcal
Total: -82.46 0.91 -81.54 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001737980486.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -31.014 kcal
(2) G-P(sol) polarization free energy of solvation -82.457 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.471 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.914 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.543 kcal
(6) G-S(sol) free energy of system = (1) + (5) -112.557 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.65 seconds