Wall clock time and date at job start Sat Apr 11 2020 06:32:06
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50697 * 1
3 3 C 1.37782 * 120.01191 * 2 1
4 4 C 1.38743 * 120.72352 * 180.02562 * 3 2 1
5 5 C 1.37753 * 120.29395 * 359.97438 * 4 3 2
6 6 C 1.39452 * 119.60307 * 0.02716 * 5 4 3
7 7 C 1.39236 * 120.01410 * 180.27733 * 2 1 3
8 8 N 1.37803 * 120.53611 * 359.46560 * 7 2 1
9 9 H 0.97004 * 118.59830 * 0.54573 * 8 7 2
10 10 C 1.33957 * 122.80757 * 180.26575 * 8 7 2
11 11 C 1.37943 * 122.21013 * 0.25821 * 10 8 7
12 12 C 1.47134 * 120.55415 * 179.97438 * 11 10 8
13 13 O 1.21638 * 119.99898 * 224.41553 * 12 11 10
14 14 N 1.34777 * 120.00067 * 44.40428 * 12 11 10
15 15 C 1.47020 * 125.64601 * 5.00662 * 14 12 11
16 16 C 1.54339 * 107.26505 * 178.84527 * 15 14 12
17 17 C 1.55156 * 103.01689 * 338.13944 * 16 15 14
18 18 O 1.42903 * 111.00333 * 277.23027 * 17 16 15
19 19 C 1.50697 * 111.00264 * 153.38551 * 17 16 15
20 20 H 1.08007 * 120.00306 * 6.34311 * 19 17 16
21 21 C 1.37879 * 120.00216 * 186.34991 * 19 17 16
22 22 N 1.31515 * 119.99666 * 359.97438 * 21 19 17
23 23 Si 1.86801 * 120.00230 * 179.97438 * 21 19 17
24 24 H 1.48503 * 109.47098 * 89.99823 * 23 21 19
25 25 H 1.48492 * 109.46919 * 209.99875 * 23 21 19
26 26 H 1.48500 * 109.47234 * 329.99734 * 23 21 19
27 27 C 1.47422 * 125.64875 * 185.30576 * 14 12 11
28 28 C 1.47148 * 118.89622 * 0.02562 * 11 10 8
29 29 O 1.21859 * 121.41426 * 179.97438 * 28 11 10
30 30 H 1.09003 * 109.47454 * 90.00019 * 1 2 3
31 31 H 1.09000 * 109.47063 * 209.99733 * 1 2 3
32 32 H 1.09000 * 109.47576 * 329.99954 * 1 2 3
33 33 H 1.07992 * 119.63975 * 359.97438 * 3 2 1
34 34 H 1.08006 * 119.85556 * 180.02562 * 4 3 2
35 35 H 1.07999 * 120.20077 * 180.02562 * 5 4 3
36 36 H 1.07997 * 118.89532 * 180.23919 * 10 8 7
37 37 H 1.08997 * 109.88436 * 298.38805 * 15 14 12
38 38 H 1.08998 * 109.88575 * 59.55250 * 15 14 12
39 39 H 1.09002 * 110.84627 * 219.67265 * 16 15 14
40 40 H 1.08996 * 110.66939 * 96.52158 * 16 15 14
41 41 H 0.96701 * 114.00084 * 173.65051 * 18 17 16
42 42 H 0.97000 * 119.99957 * 180.02562 * 22 21 19
43 43 H 1.09003 * 110.36990 * 322.93414 * 27 14 12
44 44 H 1.08998 * 110.36402 * 85.15205 * 27 14 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.1961 1.1931 0.0000
4 6 3.5835 1.2103 -0.0005
5 6 4.2930 0.0296 -0.0005
6 6 3.6087 -1.1854 -0.0006
7 6 2.2034 -1.2056 -0.0058
8 7 1.5260 -2.4056 -0.0006
9 1 0.5560 -2.3912 -0.0008
10 6 2.1496 -3.5912 -0.0006
11 6 3.5248 -3.6986 -0.0007
12 6 4.1718 -5.0200 -0.0001
13 8 5.1151 -5.2350 0.7372
14 7 3.7192 -5.9923 -0.8163
15 6 2.6619 -5.8398 -1.8264
16 6 2.5039 -7.2026 -2.5335
17 6 3.8657 -7.8958 -2.2646
18 8 4.8528 -7.4677 -3.2049
19 6 3.7209 -9.3957 -2.2819
20 1 2.7805 -9.8443 -2.5662
21 6 4.7891 -10.1955 -1.9346
22 7 5.9343 -9.6493 -1.5887
23 14 4.6095 -12.0547 -1.9554
24 1 4.9776 -12.5726 -3.2976
25 1 5.5059 -12.6500 -0.9322
26 1 3.2021 -12.4195 -1.6529
27 6 4.1981 -7.3864 -0.8399
28 6 4.3340 -2.4696 -0.0001
29 8 5.5519 -2.5110 0.0003
30 1 -0.3634 0.0000 -1.0277
31 1 -0.3633 -0.8900 0.5138
32 1 -0.3634 0.8899 0.5138
33 1 1.6505 2.1250 -0.0004
34 1 4.1094 2.1536 -0.0001
35 1 5.3729 0.0448 -0.0005
36 1 1.5557 -4.4932 -0.0002
37 1 1.7256 -5.5598 -1.3437
38 1 2.9492 -5.0789 -2.5520
39 1 2.3441 -7.0683 -3.6033
40 1 1.6869 -7.7729 -2.0916
41 1 5.7425 -7.7981 -3.0191
42 1 6.6859 -10.2119 -1.3447
43 1 5.2735 -7.4212 -0.6660
44 1 3.6739 -7.9802 -0.0911
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000592950217.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:32:06
Heat of formation + Delta-G solvation = -97.490879 kcal
Electronic energy + Delta-G solvation = -29774.006298 eV
Core-core repulsion = 25655.147770 eV
Total energy + Delta-G solvation = -4118.858528 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 342.141 amu
Computer time = 0.77 seconds
Orbital eigenvalues (eV)
-42.29223 -40.85844 -39.39478 -38.66756 -38.26262 -36.04860 -34.25530 -34.23252
-32.61568 -31.55117 -31.26286 -29.51928 -27.98898 -27.22183 -25.47726 -24.90927
-23.98075 -22.39940 -21.48992 -20.96289 -19.63562 -19.25148 -18.97951 -18.82334
-17.58956 -17.14655 -16.76325 -16.53317 -16.36333 -16.14970 -15.96655 -15.87059
-15.43450 -14.92994 -14.75349 -14.71212 -14.63984 -14.52977 -14.07239 -13.87160
-13.63291 -13.49259 -13.26961 -13.23152 -12.84167 -12.77872 -12.70564 -12.48896
-12.31724 -12.22722 -12.20945 -12.04623 -11.28055 -11.15881 -10.69754 -10.60720
-10.38552 -10.25445 -9.94592 -9.46186 -8.82106 -8.22642 -6.41439 -0.36852
-0.27172 0.61746 1.42724 1.43906 1.50450 1.54424 1.71898 1.93425
2.31595 2.40277 2.84248 3.02891 3.07709 3.42473 3.52859 3.72407
3.79364 3.92339 4.01609 4.08515 4.14276 4.25679 4.33185 4.40565
4.52359 4.56704 4.60184 4.76327 4.78535 4.83655 4.88679 5.04829
5.08393 5.10589 5.27759 5.33610 5.37844 5.43422 5.46062 5.51335
5.53173 5.76842 5.85481 6.07785 6.08667 6.64212 6.72325 6.75609
7.24121 7.27577 7.35158 8.82271
Molecular weight = 342.14amu
Principal moments of inertia in cm(-1)
A = 0.023980 B = 0.002726 C = 0.002572
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1167.355238 B =10269.313286 C =10884.976758
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.116 4.116
2 C -0.118 4.118
3 C -0.056 4.056
4 C -0.136 4.136
5 C -0.068 4.068
6 C -0.202 4.202
7 C 0.171 3.829
8 N -0.564 5.564
9 H 0.446 0.554
10 C 0.257 3.743
11 C -0.371 4.371
12 C 0.583 3.417
13 O -0.600 6.600
14 N -0.613 5.613
15 C 0.104 3.896
16 C -0.110 4.110
17 C 0.228 3.772
18 O -0.592 6.592
19 C -0.551 4.551
20 H 0.076 0.924
21 C 0.020 3.980
22 N -0.920 5.920
23 Si 0.967 3.033
24 H -0.276 1.276
25 H -0.290 1.290
26 H -0.258 1.258
27 C 0.108 3.892
28 C 0.414 3.586
29 O -0.540 6.540
30 H 0.092 0.908
31 H 0.078 0.922
32 H 0.096 0.904
33 H 0.175 0.825
34 H 0.158 0.842
35 H 0.117 0.883
36 H 0.212 0.788
37 H 0.110 0.890
38 H 0.062 0.938
39 H 0.084 0.916
40 H 0.102 0.898
41 H 0.371 0.629
42 H 0.267 0.733
43 H 0.034 0.966
44 H 0.051 0.949
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -22.013 23.070 2.173 31.962
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.173 4.173
2 C -0.120 4.120
3 C -0.075 4.075
4 C -0.155 4.155
5 C -0.087 4.087
6 C -0.206 4.206
7 C 0.069 3.931
8 N -0.174 5.174
9 H 0.290 0.710
10 C 0.120 3.880
11 C -0.383 4.383
12 C 0.374 3.626
13 O -0.482 6.482
14 N -0.346 5.346
15 C -0.017 4.017
16 C -0.147 4.147
17 C 0.187 3.813
18 O -0.399 6.399
19 C -0.589 4.589
20 H 0.094 0.906
21 C -0.180 4.180
22 N -0.559 5.559
23 Si 0.792 3.208
24 H -0.202 1.202
25 H -0.216 1.216
26 H -0.182 1.182
27 C -0.015 4.015
28 C 0.302 3.698
29 O -0.424 6.424
30 H 0.111 0.889
31 H 0.097 0.903
32 H 0.115 0.885
33 H 0.192 0.808
34 H 0.176 0.824
35 H 0.135 0.865
36 H 0.229 0.771
37 H 0.128 0.872
38 H 0.080 0.920
39 H 0.103 0.897
40 H 0.120 0.880
41 H 0.219 0.781
42 H 0.076 0.924
43 H 0.052 0.948
44 H 0.070 0.930
Dipole moment (debyes) X Y Z Total
from point charges -21.234 23.312 2.391 31.624
hybrid contribution 1.793 -1.896 0.445 2.647
sum -19.441 21.416 2.836 29.063
Atomic orbital electron populations
1.20911 0.86887 1.05043 1.04423 1.19953 0.98348 0.89672 1.04074
1.21556 0.93531 0.98629 0.93764 1.21468 0.95105 0.97739 1.01150
1.21178 1.00445 0.91477 0.95570 1.20132 0.93216 0.94775 1.12430
1.17815 0.89668 0.86839 0.98745 1.40959 1.11849 1.01839 1.62727
0.70989 1.22318 0.92004 0.90481 0.83231 1.21425 0.94741 0.93236
1.28918 1.17746 0.82280 0.83465 0.79121 1.90724 1.30745 1.82408
1.44289 1.48709 1.39215 1.10421 1.36218 1.22339 0.90493 0.98731
0.90150 1.22651 0.96476 0.94226 1.01352 1.19969 0.86236 0.91956
0.83095 1.86096 1.21797 1.77068 1.54924 1.21818 0.98941 0.91399
1.46750 0.90612 1.25933 0.94848 1.03981 0.93268 1.69899 1.03002
1.37410 1.45622 0.85416 0.78546 0.79248 0.77572 1.20202 1.21619
1.18218 1.22824 0.98189 0.79549 1.00963 1.20123 0.88045 0.88600
0.73006 1.90672 1.17227 1.89634 1.44908 0.88911 0.90342 0.88500
0.80785 0.82442 0.86477 0.77127 0.87219 0.91977 0.89707 0.87964
0.78126 0.92411 0.94782 0.93028
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -0.04 9.56 71.24 0.68 0.64 16
2 C -0.12 -1.09 5.90 -19.73 -0.12 -1.20 16
3 C -0.06 -0.48 9.66 22.28 0.22 -0.27 16
4 C -0.14 -1.91 10.03 22.28 0.22 -1.69 16
5 C -0.07 -1.65 9.65 22.45 0.22 -1.43 16
6 C -0.20 -5.60 5.89 -19.99 -0.12 -5.72 16
7 C 0.17 2.89 6.64 39.00 0.26 3.15 16
8 N -0.56 -6.52 5.14 -186.89 -0.96 -7.48 16
9 H 0.45 0.50 6.67 -92.71 -0.62 -0.12 16
10 C 0.26 4.91 9.54 84.30 0.80 5.72 16
11 C -0.37 -13.22 5.55 -18.67 -0.10 -13.32 16
12 C 0.58 27.49 7.26 86.58 0.63 28.12 16
13 O -0.60 -35.64 16.82 2.29 0.04 -35.60 16
14 N -0.61 -26.68 3.33 -815.98 -2.71 -29.39 16
15 C 0.10 3.28 5.89 86.73 0.51 3.79 16
16 C -0.11 -3.94 6.13 31.79 0.19 -3.75 16
17 C 0.23 11.25 0.87 -10.15 -0.01 11.24 16
18 O -0.59 -32.30 13.16 -148.98 -1.96 -34.26 16
19 C -0.55 -28.74 8.27 25.60 0.21 -28.53 16
20 H 0.08 3.71 7.79 -2.91 -0.02 3.69 16
21 C 0.02 1.08 5.29 84.66 0.45 1.53 16
22 N -0.92 -53.01 10.69 21.45 0.23 -52.78 16
23 Si 0.97 42.52 29.54 68.60 2.03 44.54 16
24 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16
25 H -0.29 -12.90 7.11 99.48 0.71 -12.20 16
26 H -0.26 -10.65 7.11 99.48 0.71 -9.95 16
27 C 0.11 5.57 5.41 86.85 0.47 6.04 16
28 C 0.41 16.50 7.12 27.05 0.19 16.70 16
29 O -0.54 -27.66 16.62 1.59 0.03 -27.64 16
30 H 0.09 -0.14 8.14 -2.39 -0.02 -0.16 16
31 H 0.08 -0.19 6.56 -2.39 -0.02 -0.21 16
32 H 0.10 -0.21 8.08 -2.39 -0.02 -0.23 16
33 H 0.17 0.11 8.06 -2.91 -0.02 0.09 16
34 H 0.16 1.33 8.06 -2.91 -0.02 1.31 16
35 H 0.12 3.24 7.78 -2.91 -0.02 3.22 16
36 H 0.21 2.36 6.04 -2.91 -0.02 2.34 16
37 H 0.11 2.06 5.73 -2.39 -0.01 2.05 16
38 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16
39 H 0.08 2.88 8.14 -2.39 -0.02 2.86 16
40 H 0.10 3.17 8.03 -2.39 -0.02 3.16 16
41 H 0.37 21.60 7.57 -74.06 -0.56 21.03 16
42 H 0.27 14.85 8.31 -92.71 -0.77 14.08 16
43 H 0.03 2.10 7.28 -2.39 -0.02 2.08 16
44 H 0.05 2.68 8.03 -2.39 -0.02 2.66 16
Total: -1.00 -96.49 363.70 1.29 -95.20
By element:
Atomic # 1 Polarization: 26.49 SS G_CDS: -0.10 Total: 26.38 kcal
Atomic # 6 Polarization: 16.32 SS G_CDS: 4.71 Total: 21.02 kcal
Atomic # 7 Polarization: -86.21 SS G_CDS: -3.44 Total: -89.65 kcal
Atomic # 8 Polarization: -95.60 SS G_CDS: -1.90 Total: -97.50 kcal
Atomic # 14 Polarization: 42.52 SS G_CDS: 2.03 Total: 44.54 kcal
Total: -96.49 1.29 -95.20 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000592950217.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -2.294 kcal
(2) G-P(sol) polarization free energy of solvation -96.489 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.783 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.292 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.197 kcal
(6) G-S(sol) free energy of system = (1) + (5) -97.491 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.77 seconds