Wall clock time and date at job start Sat Apr 11 2020 06:38:11
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31620 * 1
3 3 Si 1.86802 * 119.99698 * 2 1
4 4 H 1.48502 * 109.46916 * 239.99350 * 3 2 1
5 5 H 1.48499 * 109.47290 * 359.97438 * 3 2 1
6 6 H 1.48503 * 109.47030 * 119.99930 * 3 2 1
7 7 C 1.38811 * 120.00188 * 179.97438 * 2 1 3
8 8 H 1.07996 * 120.00112 * 156.20229 * 7 2 1
9 9 N 1.36940 * 119.99917 * 336.19631 * 7 2 1
10 10 C 1.44348 * 116.42409 * 332.25133 * 9 7 2
11 11 C 1.51578 * 113.01505 * 188.02866 * 10 9 7
12 12 C 1.52907 * 111.66134 * 320.12159 * 11 10 9
13 13 H 1.09008 * 112.47770 * 293.93663 * 12 11 10
14 14 C 1.55414 * 106.57110 * 169.88340 * 12 11 10
15 15 N 1.47381 * 106.74384 * 270.99478 * 14 12 11
16 16 C 1.34770 * 125.74237 * 179.02291 * 15 14 12
17 17 O 1.21279 * 119.99900 * 0.02562 * 16 15 14
18 18 C 1.50697 * 119.99831 * 180.02562 * 16 15 14
19 19 H 1.08997 * 110.28724 * 27.88818 * 18 16 15
20 20 C 1.54165 * 110.31838 * 150.00251 * 18 16 15
21 21 C 1.53873 * 108.70592 * 146.81089 * 20 18 16
22 22 C 1.55044 * 106.62451 * 312.81915 * 21 20 18
23 23 S 1.83291 * 102.73905 * 42.33916 * 22 21 20
24 24 O 1.42096 * 109.35346 * 90.28154 * 23 22 21
25 25 O 1.42102 * 109.35074 * 223.48322 * 23 22 21
26 26 C 1.47941 * 108.51410 * 359.29145 * 15 14 12
27 27 C 1.54106 * 109.62746 * 60.85857 * 12 11 10
28 28 H 1.08996 * 109.18962 * 187.52802 * 27 12 11
29 29 C 1.43980 * 116.42668 * 152.23131 * 9 7 2
30 30 H 0.96996 * 120.00340 * 0.02562 * 1 2 3
31 31 H 1.09004 * 108.77651 * 67.11578 * 10 9 7
32 32 H 1.08996 * 108.77793 * 308.93953 * 10 9 7
33 33 H 1.08994 * 109.04427 * 199.55949 * 11 10 9
34 34 H 1.08996 * 109.03855 * 80.67986 * 11 10 9
35 35 H 1.09001 * 110.00680 * 151.67202 * 14 12 11
36 36 H 1.09006 * 110.03864 * 30.33990 * 14 12 11
37 37 H 1.09000 * 109.64643 * 26.96238 * 20 18 16
38 38 H 1.09002 * 109.54252 * 266.60126 * 20 18 16
39 39 H 1.09000 * 110.03220 * 193.53010 * 21 20 18
40 40 H 1.08993 * 110.07020 * 72.13515 * 21 20 18
41 41 H 1.09000 * 110.79363 * 160.70101 * 22 21 20
42 42 H 1.09000 * 110.79370 * 283.97056 * 22 21 20
43 43 H 1.08998 * 110.56188 * 93.91635 * 26 15 14
44 44 H 1.08999 * 110.56522 * 216.76896 * 26 15 14
45 45 H 1.09006 * 108.10848 * 304.64960 * 29 9 7
46 46 H 1.09002 * 108.11530 * 61.09391 * 29 9 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2501 1.6178 0.0000
4 1 3.1040 1.6964 -1.2125
5 1 1.2851 2.7465 -0.0006
6 1 3.1039 1.6965 1.2125
7 6 2.0103 -1.2021 0.0005
8 1 3.0214 -1.2420 -0.3768
9 7 1.4130 -2.3374 0.4797
10 6 0.3945 -2.1518 1.4857
11 6 -0.0766 -3.4552 2.0995
12 6 -0.2048 -4.5596 1.0498
13 1 -0.9912 -4.3547 0.3232
14 6 -0.4350 -5.8855 1.8272
15 7 0.8973 -6.4470 2.1130
16 6 1.1428 -7.5865 2.7893
17 8 0.2211 -8.2457 3.2216
18 6 2.5626 -8.0417 3.0084
19 1 3.2359 -7.1847 3.0251
20 6 2.6732 -8.8350 4.3256
21 6 3.7457 -9.9254 4.1564
22 6 3.4551 -10.6276 2.8050
23 16 3.0576 -9.2227 1.6968
24 8 4.2492 -8.7620 1.0746
25 8 1.9253 -9.5537 0.9046
26 6 1.9200 -5.5457 1.5382
27 6 1.1689 -4.8197 0.4016
28 1 1.0461 -5.5086 -0.4340
29 6 1.8695 -3.5849 -0.0756
30 1 -0.4850 0.8400 -0.0004
31 1 -0.4594 -1.6489 1.0318
32 1 0.7937 -1.5160 2.2759
33 1 -1.0472 -3.2967 2.5693
34 1 0.6383 -3.7688 2.8602
35 1 -1.0096 -6.5813 1.2158
36 1 -0.9631 -5.6850 2.7595
37 1 1.7137 -9.2976 4.5565
38 1 2.9593 -8.1619 5.1337
39 1 3.6790 -10.6446 4.9727
40 1 4.7378 -9.4744 4.1369
41 1 4.3355 -11.1632 2.4500
42 1 2.6038 -11.3024 2.8948
43 1 2.2671 -4.8336 2.2869
44 1 2.7556 -6.1203 1.1385
45 1 1.7638 -3.5322 -1.1592
46 1 2.9307 -3.6886 0.1510
RHF calculation, no. of doubly occupied orbitals= 62
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001088206425.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:38:11
Heat of formation + Delta-G solvation = -94.430717 kcal
Electronic energy + Delta-G solvation = -29393.606316 eV
Core-core repulsion = 25410.324437 eV
Total energy + Delta-G solvation = -3983.281878 eV
No. of doubly occupied orbitals = 62
Molecular weight
(most abundant/longest-lived isotopes) = 342.145 amu
Computer time = 1.56 seconds
Orbital eigenvalues (eV)
-41.77656 -40.03939 -38.26760 -37.50240 -37.24362 -36.74534 -34.39005 -33.23942
-32.21324 -31.32208 -29.32345 -27.35007 -26.69148 -25.11435 -23.74612 -23.23032
-22.38439 -21.01278 -19.77993 -19.46882 -18.98279 -18.56485 -18.10515 -17.62645
-17.08422 -16.86838 -16.75006 -16.16990 -15.86322 -15.70471 -15.35002 -15.15297
-14.96966 -14.82273 -14.69303 -14.38540 -13.85126 -13.79692 -13.52639 -13.38522
-13.34195 -13.26945 -13.16092 -12.98395 -12.86853 -12.83614 -12.56720 -12.24278
-12.06583 -11.96071 -11.90768 -11.70501 -11.54051 -11.40091 -11.31750 -11.24982
-11.14026 -10.52599 -9.87612 -8.64804 -7.67885 -5.39304 -1.20310 1.21141
1.47625 1.50095 1.52707 1.56865 1.61884 2.48206 2.52229 2.74830
3.17067 3.22170 3.26357 3.36168 3.53892 3.67102 3.69859 3.77314
3.78439 4.00590 4.08897 4.16195 4.18560 4.37229 4.41492 4.54717
4.57222 4.60411 4.65441 4.69234 4.82134 4.88921 4.98248 4.98905
5.03314 5.03709 5.12710 5.18045 5.23786 5.26987 5.41367 5.70351
5.95959 6.23053 6.45809 6.79668 7.23081 8.05371 8.24303 9.13414
Molecular weight = 342.14amu
Principal moments of inertia in cm(-1)
A = 0.021589 B = 0.002942 C = 0.002808
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1296.675085 B = 9513.541008 C = 9970.263928
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.917 5.917
2 C -0.041 4.041
3 Si 0.961 3.039
4 H -0.275 1.275
5 H -0.293 1.293
6 H -0.281 1.281
7 C -0.286 4.286
8 H 0.064 0.936
9 N -0.597 5.597
10 C 0.164 3.836
11 C -0.111 4.111
12 C -0.077 4.077
13 H 0.098 0.902
14 C 0.115 3.885
15 N -0.615 5.615
16 C 0.550 3.450
17 O -0.553 6.553
18 C -0.586 4.586
19 H 0.179 0.821
20 C -0.104 4.104
21 C -0.115 4.115
22 C -0.551 4.551
23 S 2.368 3.632
24 O -0.955 6.955
25 O -0.971 6.971
26 C 0.101 3.899
27 C -0.099 4.099
28 H 0.089 0.911
29 C 0.174 3.826
30 H 0.250 0.750
31 H 0.048 0.952
32 H -0.007 1.007
33 H 0.074 0.926
34 H 0.058 0.942
35 H 0.072 0.928
36 H 0.079 0.921
37 H 0.091 0.909
38 H 0.116 0.884
39 H 0.134 0.866
40 H 0.110 0.890
41 H 0.170 0.830
42 H 0.157 0.843
43 H 0.088 0.912
44 H 0.089 0.911
45 H 0.011 0.989
46 H 0.025 0.975
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 7.444 -21.926 11.071 25.666
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.562 5.562
2 C -0.239 4.239
3 Si 0.789 3.211
4 H -0.201 1.201
5 H -0.219 1.219
6 H -0.207 1.207
7 C -0.417 4.417
8 H 0.081 0.919
9 N -0.321 5.321
10 C 0.039 3.961
11 C -0.148 4.148
12 C -0.096 4.096
13 H 0.116 0.884
14 C -0.007 4.007
15 N -0.348 5.348
16 C 0.337 3.663
17 O -0.432 6.432
18 C -0.695 4.695
19 H 0.196 0.804
20 C -0.143 4.143
21 C -0.154 4.154
22 C -0.686 4.686
23 S 2.554 3.446
24 O -0.952 6.952
25 O -0.968 6.968
26 C -0.021 4.021
27 C -0.119 4.119
28 H 0.107 0.893
29 C 0.048 3.952
30 H 0.060 0.940
31 H 0.065 0.935
32 H 0.011 0.989
33 H 0.092 0.908
34 H 0.077 0.923
35 H 0.090 0.910
36 H 0.097 0.903
37 H 0.110 0.890
38 H 0.135 0.865
39 H 0.152 0.848
40 H 0.129 0.871
41 H 0.188 0.812
42 H 0.175 0.825
43 H 0.106 0.894
44 H 0.107 0.893
45 H 0.029 0.971
46 H 0.043 0.957
Dipole moment (debyes) X Y Z Total
from point charges 6.852 -22.150 10.340 25.386
hybrid contribution 0.045 1.527 0.276 1.552
sum 6.897 -20.623 10.616 24.198
Atomic orbital electron populations
1.70139 1.06687 1.25800 1.53527 1.25708 0.95723 1.01398 1.01029
0.85444 0.77848 0.79505 0.78306 1.20082 1.21949 1.20684 1.19416
0.95922 0.87788 1.38556 0.91852 1.42905 1.44347 1.01769 1.43083
1.20010 0.92958 0.94051 0.89113 1.21540 1.01353 0.94639 0.97312
1.22010 0.97284 0.93131 0.97156 0.88365 1.22390 0.83935 0.94162
1.00247 1.48722 1.09401 1.22374 1.54286 1.19153 0.89787 0.79672
0.77645 1.90677 1.46348 1.54883 1.51265 1.30696 1.02005 1.17377
1.19469 0.80395 1.22121 1.02451 0.97034 0.92651 1.22401 1.00031
0.97150 0.95779 1.30498 1.14129 1.13538 1.10429 1.09846 0.74807
0.81247 0.78702 1.93609 1.46633 1.80993 1.73937 1.93594 1.52725
1.82926 1.67579 1.22683 0.91048 0.92467 0.95927 1.21563 0.95574
0.96848 0.97885 0.89298 1.19315 0.96152 0.84493 0.95193 0.94044
0.93460 0.98927 0.90763 0.92339 0.91005 0.90258 0.89011 0.86535
0.84795 0.87116 0.81197 0.82544 0.89358 0.89316 0.97117 0.95680
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 38.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.92 -53.18 10.90 21.65 0.24 -52.95 16
2 C -0.04 -2.29 4.96 84.86 0.42 -1.86 16
3 Si 0.96 44.47 29.62 68.60 2.03 46.50 16
4 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16
5 H -0.29 -13.58 7.11 99.48 0.71 -12.88 16
6 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16
7 C -0.29 -15.66 9.26 84.03 0.78 -14.88 16
8 H 0.06 3.41 7.93 -2.91 -0.02 3.39 16
9 N -0.60 -29.26 3.23 -722.43 -2.33 -31.59 16
10 C 0.16 7.69 5.11 86.31 0.44 8.13 16
11 C -0.11 -3.88 4.78 30.10 0.14 -3.74 16
12 C -0.08 -2.45 3.65 -9.62 -0.04 -2.49 16
13 H 0.10 3.24 8.14 -2.38 -0.02 3.22 16
14 C 0.11 3.28 6.24 87.04 0.54 3.82 16
15 N -0.61 -17.24 3.34 -808.44 -2.70 -19.94 16
16 C 0.55 14.87 6.38 87.66 0.56 15.43 16
17 O -0.55 -17.85 16.06 -3.03 -0.05 -17.90 16
18 C -0.59 -10.39 3.02 30.24 0.09 -10.30 16
19 H 0.18 2.41 7.13 -2.39 -0.02 2.39 16
20 C -0.10 -1.10 5.90 31.28 0.18 -0.91 16
21 C -0.12 -0.50 6.48 31.59 0.20 -0.29 16
22 C -0.55 -4.19 7.29 72.68 0.53 -3.66 16
23 S 2.37 46.22 5.96 -56.49 -0.34 45.89 16
24 O -0.95 -23.37 18.15 -127.49 -2.31 -25.68 16
25 O -0.97 -28.42 17.30 -127.49 -2.21 -30.63 16
26 C 0.10 2.75 5.05 86.57 0.44 3.19 16
27 C -0.10 -3.22 2.84 -10.99 -0.03 -3.25 16
28 H 0.09 2.71 8.14 -2.39 -0.02 2.69 16
29 C 0.17 7.06 5.75 85.81 0.49 7.55 16
30 H 0.25 14.07 8.31 -92.71 -0.77 13.30 16
31 H 0.05 2.59 5.78 -2.39 -0.01 2.57 16
32 H -0.01 -0.38 8.11 -2.39 -0.02 -0.40 16
33 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16
34 H 0.06 1.93 6.60 -2.39 -0.02 1.91 16
35 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16
36 H 0.08 2.18 7.79 -2.38 -0.02 2.16 16
37 H 0.09 1.25 6.88 -2.39 -0.02 1.24 16
38 H 0.12 0.82 8.14 -2.39 -0.02 0.80 16
39 H 0.13 -0.05 8.14 -2.39 -0.02 -0.07 16
40 H 0.11 0.12 8.14 -2.39 -0.02 0.10 16
41 H 0.17 0.45 8.14 -2.39 -0.02 0.43 16
42 H 0.16 0.90 8.14 -2.39 -0.02 0.88 16
43 H 0.09 2.38 7.16 -2.39 -0.02 2.37 16
44 H 0.09 2.10 7.53 -2.39 -0.02 2.08 16
45 H 0.01 0.47 8.14 -2.38 -0.02 0.45 16
46 H 0.03 0.98 7.81 -2.39 -0.02 0.96 16
Total: -1.00 -79.27 365.03 -1.93 -81.20
By element:
Atomic # 1 Polarization: 7.38 SS G_CDS: 0.98 Total: 8.35 kcal
Atomic # 6 Polarization: -8.02 SS G_CDS: 4.76 Total: -3.26 kcal
Atomic # 7 Polarization: -99.68 SS G_CDS: -4.80 Total: -104.48 kcal
Atomic # 8 Polarization: -69.64 SS G_CDS: -4.57 Total: -74.21 kcal
Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.50 kcal
Atomic # 16 Polarization: 46.22 SS G_CDS: -0.34 Total: 45.89 kcal
Total: -79.27 -1.93 -81.20 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001088206425.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -13.229 kcal
(2) G-P(sol) polarization free energy of solvation -79.273 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.502 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.928 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.202 kcal
(6) G-S(sol) free energy of system = (1) + (5) -94.431 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.56 seconds