Wall clock time and date at job start Sat Apr 11 2020 06:36:32
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31625 * 1
3 3 Si 1.86803 * 119.99824 * 2 1
4 4 H 1.48501 * 109.47367 * 239.99730 * 3 2 1
5 5 H 1.48498 * 109.47311 * 0.02562 * 3 2 1
6 6 H 1.48504 * 109.46831 * 119.99735 * 3 2 1
7 7 C 1.38796 * 120.00398 * 180.02562 * 2 1 3
8 8 H 1.07998 * 120.00433 * 180.02562 * 7 2 1
9 9 S 1.76206 * 119.99847 * 359.97438 * 7 2 1
10 10 C 1.81000 * 99.99929 * 180.02562 * 9 7 2
11 11 C 1.50699 * 109.46881 * 180.02562 * 10 9 7
12 12 O 1.21282 * 120.00041 * 359.97438 * 11 10 9
13 13 N 1.34779 * 120.00037 * 180.02562 * 11 10 9
14 14 C 1.46500 * 120.00169 * 180.02562 * 13 11 10
15 15 C 1.52996 * 109.47364 * 179.97438 * 14 13 11
16 16 H 1.09010 * 109.46666 * 65.00169 * 15 14 13
17 17 N 1.46499 * 109.47222 * 305.00540 * 15 14 13
18 18 C 1.34775 * 120.00223 * 154.99880 * 17 15 14
19 19 O 1.21288 * 119.99919 * 359.97438 * 18 17 15
20 20 C 1.50694 * 120.00482 * 179.97438 * 18 17 15
21 21 H 1.09002 * 110.27458 * 305.64128 * 20 18 17
22 22 C 1.54956 * 110.30768 * 67.82988 * 20 18 17
23 23 C 1.55307 * 100.94216 * 155.36337 * 22 20 18
24 24 C 1.54383 * 102.25095 * 325.86856 * 23 22 20
25 25 O 1.43235 * 107.59086 * 21.35799 * 24 23 22
26 26 C 1.52999 * 109.47208 * 184.99986 * 15 14 13
27 27 C 1.53007 * 117.49721 * 248.74902 * 26 15 14
28 28 C 1.53004 * 117.49662 * 180.09362 * 26 15 14
29 29 H 0.96996 * 120.00393 * 0.02562 * 1 2 3
30 30 H 1.09000 * 109.47216 * 300.00172 * 10 9 7
31 31 H 1.09001 * 109.46620 * 60.00275 * 10 9 7
32 32 H 0.96996 * 119.99844 * 359.97438 * 13 11 10
33 33 H 1.09004 * 109.46923 * 300.00119 * 14 13 11
34 34 H 1.09004 * 109.47042 * 59.99705 * 14 13 11
35 35 H 0.97001 * 119.99715 * 334.99042 * 17 15 14
36 36 H 1.09000 * 111.12771 * 273.28107 * 22 20 18
37 37 H 1.08998 * 111.12301 * 37.44530 * 22 20 18
38 38 H 1.08994 * 110.85085 * 207.68093 * 23 22 20
39 39 H 1.09002 * 111.02301 * 84.13227 * 23 22 20
40 40 H 1.08996 * 109.83344 * 261.84285 * 24 23 22
41 41 H 1.09001 * 109.83317 * 140.86765 * 24 23 22
42 42 H 1.08996 * 115.54978 * 34.41771 * 26 15 14
43 43 H 1.08995 * 117.49821 * 0.02562 * 27 26 15
44 44 H 1.08996 * 117.49671 * 145.02216 * 27 26 15
45 45 H 1.08999 * 117.49430 * 214.97818 * 28 26 15
46 46 H 1.09004 * 117.49842 * 359.97267 * 28 26 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2502 1.6178 0.0000
4 1 3.1040 1.6965 -1.2125
5 1 1.2852 2.7465 0.0006
6 1 3.1039 1.6964 1.2126
7 6 2.0103 -1.2020 -0.0005
8 1 3.0903 -1.2020 -0.0001
9 16 1.1293 -2.7280 -0.0005
10 6 2.5159 -3.8914 -0.0005
11 6 1.9875 -5.3027 -0.0012
12 8 0.7912 -5.5023 -0.0011
13 7 2.8443 -6.3431 -0.0008
14 6 2.3306 -7.7151 -0.0019
15 6 3.5026 -8.6985 -0.0018
16 1 4.0595 -8.5999 0.9301
17 7 4.3867 -8.4047 -1.1324
18 6 5.6867 -8.7565 -1.0804
19 8 6.1248 -9.3158 -0.0974
20 6 6.5961 -8.4548 -2.2436
21 1 6.1821 -8.8676 -3.1636
22 6 6.8019 -6.9253 -2.3828
23 6 8.1690 -6.8776 -3.1183
24 6 8.9015 -8.1016 -2.5279
25 8 7.9075 -8.9894 -2.0031
26 6 2.9697 -10.1271 -0.1288
27 6 3.1122 -11.0449 1.0871
28 6 3.9934 -11.2641 -0.1452
29 1 -0.4850 0.8400 -0.0004
30 1 3.1246 -3.7312 -0.8905
31 1 3.1245 -3.7312 0.8895
32 1 3.8010 -6.1834 -0.0004
33 1 1.7210 -7.8755 0.8873
34 1 1.7228 -7.8747 -0.8927
35 1 4.0364 -7.9572 -1.9185
36 1 6.0144 -6.4764 -2.9880
37 1 6.8647 -6.4469 -1.4055
38 1 8.7029 -5.9564 -2.8852
39 1 8.0378 -6.9862 -4.1949
40 1 9.5708 -7.7823 -1.7291
41 1 9.4706 -8.6046 -3.3098
42 1 2.0784 -10.2433 -0.7453
43 1 3.5853 -10.6308 1.9775
44 1 2.3149 -11.7652 1.2701
45 1 3.7753 -12.1284 -0.7724
46 1 5.0466 -10.9943 -0.0661
RHF calculation, no. of doubly occupied orbitals= 62
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001744188556.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:36:32
Heat of formation + Delta-G solvation = -95.410660 kcal
Electronic energy + Delta-G solvation = -27481.448326 eV
Core-core repulsion = 23498.123955 eV
Total energy + Delta-G solvation = -3983.324372 eV
No. of doubly occupied orbitals = 62
Molecular weight
(most abundant/longest-lived isotopes) = 342.145 amu
Computer time = 2.01 seconds
Orbital eigenvalues (eV)
-40.87980 -39.56824 -38.85630 -37.36879 -35.33079 -33.74039 -32.54605 -32.46532
-30.87407 -29.79439 -28.15025 -25.53418 -24.33561 -23.29220 -22.50848 -22.14699
-21.13561 -20.72507 -20.19439 -18.21652 -17.81565 -17.26111 -16.57553 -16.45452
-16.12597 -15.71331 -15.65656 -15.24695 -15.11504 -14.83879 -14.53030 -14.26738
-13.91999 -13.74165 -13.57887 -13.20512 -13.00146 -12.63527 -12.44530 -12.29004
-12.22438 -12.04068 -11.83540 -11.72103 -11.57632 -11.39148 -11.08525 -11.06977
-10.81309 -10.63859 -10.50807 -10.31820 -9.86683 -9.72308 -9.51887 -9.35373
-9.10492 -9.00570 -8.28750 -6.54400 -6.25161 -3.96272 2.20811 2.46939
2.95002 3.01811 3.20516 3.24466 3.27164 3.44247 3.62169 3.70827
3.93636 4.16889 4.24032 4.28455 4.37475 4.56578 4.62096 4.63783
4.79265 4.79471 4.87359 4.97751 5.09991 5.10723 5.17939 5.20678
5.24481 5.35447 5.37574 5.46509 5.50218 5.55044 5.60961 5.72429
5.74324 5.82276 5.92132 6.01492 6.07546 6.16433 6.44461 6.48035
7.12340 7.55318 7.59056 7.88365 8.31193 8.51829 9.20057 10.82188
Molecular weight = 342.14amu
Principal moments of inertia in cm(-1)
A = 0.010749 B = 0.002644 C = 0.002173
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2604.287376 B =10587.894527 C =12880.832418
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.867 5.867
2 C 0.074 3.926
3 Si 0.918 3.082
4 H -0.274 1.274
5 H -0.283 1.283
6 H -0.274 1.274
7 C -0.537 4.537
8 H 0.072 0.928
9 S -0.059 6.059
10 C -0.154 4.154
11 C 0.532 3.468
12 O -0.515 6.515
13 N -0.740 5.740
14 C 0.118 3.882
15 C 0.167 3.833
16 H 0.097 0.903
17 N -0.721 5.721
18 C 0.517 3.483
19 O -0.515 6.515
20 C 0.064 3.936
21 H 0.097 0.903
22 C -0.148 4.148
23 C -0.154 4.154
24 C 0.048 3.952
25 O -0.355 6.355
26 C -0.171 4.171
27 C -0.168 4.168
28 C -0.180 4.180
29 H 0.269 0.731
30 H 0.089 0.911
31 H 0.089 0.911
32 H 0.398 0.602
33 H 0.085 0.915
34 H 0.074 0.926
35 H 0.403 0.597
36 H 0.095 0.905
37 H 0.087 0.913
38 H 0.088 0.912
39 H 0.081 0.919
40 H 0.073 0.927
41 H 0.073 0.927
42 H 0.109 0.891
43 H 0.096 0.904
44 H 0.094 0.906
45 H 0.088 0.912
46 H 0.117 0.883
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 14.651 -19.749 -6.314 25.388
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.503 5.503
2 C -0.135 4.135
3 Si 0.745 3.255
4 H -0.199 1.199
5 H -0.208 1.208
6 H -0.199 1.199
7 C -0.685 4.685
8 H 0.090 0.910
9 S 0.168 5.832
10 C -0.304 4.304
11 C 0.318 3.682
12 O -0.388 6.388
13 N -0.395 5.395
14 C -0.007 4.007
15 C 0.063 3.937
16 H 0.115 0.885
17 N -0.374 5.374
18 C 0.303 3.697
19 O -0.390 6.390
20 C 0.003 3.997
21 H 0.115 0.885
22 C -0.185 4.185
23 C -0.192 4.192
24 C -0.028 4.028
25 O -0.273 6.273
26 C -0.191 4.191
27 C -0.205 4.205
28 C -0.217 4.217
29 H 0.079 0.921
30 H 0.107 0.893
31 H 0.108 0.892
32 H 0.232 0.768
33 H 0.103 0.897
34 H 0.092 0.908
35 H 0.238 0.762
36 H 0.114 0.886
37 H 0.105 0.895
38 H 0.107 0.893
39 H 0.100 0.900
40 H 0.091 0.909
41 H 0.091 0.909
42 H 0.127 0.873
43 H 0.114 0.886
44 H 0.113 0.887
45 H 0.106 0.894
46 H 0.135 0.865
Dipole moment (debyes) X Y Z Total
from point charges 12.847 -20.571 -5.483 24.865
hybrid contribution 2.169 1.721 -0.567 2.826
sum 15.016 -18.850 -6.050 24.848
Atomic orbital electron populations
1.69998 1.05956 1.27625 1.46676 1.24986 0.95023 0.99021 0.94487
0.86231 0.79253 0.81250 0.78805 1.19938 1.20788 1.19925 1.22821
0.94855 0.91662 1.59197 0.90991 1.85409 1.04775 0.96288 1.96727
1.23530 1.06650 0.95354 1.04890 1.20320 0.86491 0.86238 0.75120
1.90716 1.15304 1.85561 1.47259 1.45989 1.10029 1.05240 1.78265
1.21532 0.94949 0.80442 1.03769 1.20794 0.90188 0.92175 0.90553
0.88521 1.46017 1.08821 1.61685 1.20911 1.20433 0.82265 0.78482
0.88567 1.90675 1.75096 1.40110 1.33122 1.22836 0.85866 0.94740
0.96260 0.88531 1.23280 0.98679 0.93858 1.02732 1.23126 0.95669
0.99460 1.00923 1.23228 0.91330 0.89985 0.98303 1.88526 1.12948
1.44879 1.80954 1.22566 1.01816 0.90920 1.03788 1.22948 1.02801
1.02222 0.92560 1.23287 0.98752 0.98801 1.00858 0.92083 0.89288
0.89237 0.76819 0.89716 0.90783 0.76192 0.88623 0.89483 0.89340
0.90003 0.90907 0.90930 0.87301 0.88570 0.88709 0.89377 0.86453
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.87 -25.77 13.22 55.49 0.73 -25.04 16
2 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16
3 Si 0.92 21.01 29.55 -169.99 -5.02 15.99 16
4 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16
5 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16
6 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16
7 C -0.54 -14.97 9.50 30.94 0.29 -14.67 16
8 H 0.07 1.89 7.80 -52.49 -0.41 1.48 16
9 S -0.06 -1.55 20.57 -107.50 -2.21 -3.76 16
10 C -0.15 -2.94 6.16 36.01 0.22 -2.72 16
11 C 0.53 9.23 7.85 -10.99 -0.09 9.15 16
12 O -0.51 -11.05 15.86 5.56 0.09 -10.97 16
13 N -0.74 -8.80 5.39 -60.29 -0.32 -9.12 16
14 C 0.12 1.20 5.22 -4.04 -0.02 1.18 16
15 C 0.17 1.46 2.43 -67.93 -0.17 1.29 16
16 H 0.10 1.00 7.34 -51.92 -0.38 0.61 16
17 N -0.72 -5.46 4.50 -53.81 -0.24 -5.70 16
18 C 0.52 4.99 6.51 -10.99 -0.07 4.92 16
19 O -0.52 -6.98 13.58 -13.77 -0.19 -7.16 16
20 C 0.06 0.50 3.86 -26.85 -0.10 0.40 16
21 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16
22 C -0.15 -0.89 6.56 -24.48 -0.16 -1.05 16
23 C -0.15 -0.81 7.02 -24.78 -0.17 -0.99 16
24 C 0.05 0.34 7.79 37.88 0.30 0.63 16
25 O -0.35 -3.69 10.61 -54.55 -0.58 -4.26 16
26 C -0.17 -1.45 5.36 -90.61 -0.49 -1.94 16
27 C -0.17 -1.45 10.18 -26.69 -0.27 -1.72 16
28 C -0.18 -1.69 9.74 -26.69 -0.26 -1.95 16
29 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16
30 H 0.09 1.53 8.14 -51.92 -0.42 1.11 16
31 H 0.09 1.61 8.14 -51.92 -0.42 1.18 16
32 H 0.40 3.89 8.14 -40.82 -0.33 3.55 16
33 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16
34 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16
35 H 0.40 2.33 8.60 -40.82 -0.35 1.98 16
36 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16
37 H 0.09 0.60 8.05 -51.93 -0.42 0.18 16
38 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16
39 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16
40 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16
41 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16
42 H 0.11 0.84 8.11 -51.93 -0.42 0.42 16
43 H 0.10 0.87 8.05 -51.93 -0.42 0.45 16
44 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16
45 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16
46 H 0.12 1.38 5.02 -51.93 -0.26 1.12 16
LS Contribution 395.39 15.07 5.96 5.96
Total: -1.00 -36.06 395.39 -10.07 -46.13
By element:
Atomic # 1 Polarization: 10.61 SS G_CDS: -7.20 Total: 3.41 kcal
Atomic # 6 Polarization: -4.39 SS G_CDS: -1.08 Total: -5.47 kcal
Atomic # 7 Polarization: -40.03 SS G_CDS: 0.17 Total: -39.86 kcal
Atomic # 8 Polarization: -21.72 SS G_CDS: -0.68 Total: -22.40 kcal
Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal
Atomic # 16 Polarization: -1.55 SS G_CDS: -2.21 Total: -3.76 kcal
Total LS contribution 5.96 Total: 5.96 kcal
Total: -36.06 -10.07 -46.13 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001744188556.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -49.282 kcal
(2) G-P(sol) polarization free energy of solvation -36.057 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.339 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.071 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.129 kcal
(6) G-S(sol) free energy of system = (1) + (5) -95.411 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 2.01 seconds