Wall clock time and date at job start Sat Apr 11 2020 06:36:29
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31625 * 1
3 3 Si 1.86803 * 119.99824 * 2 1
4 4 H 1.48501 * 109.47367 * 239.99730 * 3 2 1
5 5 H 1.48498 * 109.47311 * 0.02562 * 3 2 1
6 6 H 1.48504 * 109.46831 * 119.99735 * 3 2 1
7 7 C 1.38796 * 120.00398 * 180.02562 * 2 1 3
8 8 H 1.07998 * 120.00433 * 180.02562 * 7 2 1
9 9 S 1.76206 * 119.99847 * 359.97438 * 7 2 1
10 10 C 1.81000 * 99.99929 * 180.02562 * 9 7 2
11 11 C 1.50699 * 109.46881 * 180.02562 * 10 9 7
12 12 O 1.21282 * 120.00041 * 359.97438 * 11 10 9
13 13 N 1.34779 * 120.00037 * 180.02562 * 11 10 9
14 14 C 1.46500 * 120.00169 * 180.02562 * 13 11 10
15 15 C 1.52996 * 109.47364 * 179.97438 * 14 13 11
16 16 H 1.09010 * 109.46666 * 65.00169 * 15 14 13
17 17 N 1.46499 * 109.47222 * 305.00540 * 15 14 13
18 18 C 1.34775 * 120.00223 * 154.99880 * 17 15 14
19 19 O 1.21288 * 119.99919 * 359.97438 * 18 17 15
20 20 C 1.50694 * 120.00482 * 179.97438 * 18 17 15
21 21 H 1.09002 * 110.27458 * 305.64128 * 20 18 17
22 22 C 1.54956 * 110.30768 * 67.82988 * 20 18 17
23 23 C 1.55307 * 100.94216 * 155.36337 * 22 20 18
24 24 C 1.54383 * 102.25095 * 325.86856 * 23 22 20
25 25 O 1.43235 * 107.59086 * 21.35799 * 24 23 22
26 26 C 1.52999 * 109.47208 * 184.99986 * 15 14 13
27 27 C 1.53007 * 117.49721 * 248.74902 * 26 15 14
28 28 C 1.53004 * 117.49662 * 180.09362 * 26 15 14
29 29 H 0.96996 * 120.00393 * 0.02562 * 1 2 3
30 30 H 1.09000 * 109.47216 * 300.00172 * 10 9 7
31 31 H 1.09001 * 109.46620 * 60.00275 * 10 9 7
32 32 H 0.96996 * 119.99844 * 359.97438 * 13 11 10
33 33 H 1.09004 * 109.46923 * 300.00119 * 14 13 11
34 34 H 1.09004 * 109.47042 * 59.99705 * 14 13 11
35 35 H 0.97001 * 119.99715 * 334.99042 * 17 15 14
36 36 H 1.09000 * 111.12771 * 273.28107 * 22 20 18
37 37 H 1.08998 * 111.12301 * 37.44530 * 22 20 18
38 38 H 1.08994 * 110.85085 * 207.68093 * 23 22 20
39 39 H 1.09002 * 111.02301 * 84.13227 * 23 22 20
40 40 H 1.08996 * 109.83344 * 261.84285 * 24 23 22
41 41 H 1.09001 * 109.83317 * 140.86765 * 24 23 22
42 42 H 1.08996 * 115.54978 * 34.41771 * 26 15 14
43 43 H 1.08995 * 117.49821 * 0.02562 * 27 26 15
44 44 H 1.08996 * 117.49671 * 145.02216 * 27 26 15
45 45 H 1.08999 * 117.49430 * 214.97818 * 28 26 15
46 46 H 1.09004 * 117.49842 * 359.97267 * 28 26 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2502 1.6178 0.0000
4 1 3.1040 1.6965 -1.2125
5 1 1.2852 2.7465 0.0006
6 1 3.1039 1.6964 1.2126
7 6 2.0103 -1.2020 -0.0005
8 1 3.0903 -1.2020 -0.0001
9 16 1.1293 -2.7280 -0.0005
10 6 2.5159 -3.8914 -0.0005
11 6 1.9875 -5.3027 -0.0012
12 8 0.7912 -5.5023 -0.0011
13 7 2.8443 -6.3431 -0.0008
14 6 2.3306 -7.7151 -0.0019
15 6 3.5026 -8.6985 -0.0018
16 1 4.0595 -8.5999 0.9301
17 7 4.3867 -8.4047 -1.1324
18 6 5.6867 -8.7565 -1.0804
19 8 6.1248 -9.3158 -0.0974
20 6 6.5961 -8.4548 -2.2436
21 1 6.1821 -8.8676 -3.1636
22 6 6.8019 -6.9253 -2.3828
23 6 8.1690 -6.8776 -3.1183
24 6 8.9015 -8.1016 -2.5279
25 8 7.9075 -8.9894 -2.0031
26 6 2.9697 -10.1271 -0.1288
27 6 3.1122 -11.0449 1.0871
28 6 3.9934 -11.2641 -0.1452
29 1 -0.4850 0.8400 -0.0004
30 1 3.1246 -3.7312 -0.8905
31 1 3.1245 -3.7312 0.8895
32 1 3.8010 -6.1834 -0.0004
33 1 1.7210 -7.8755 0.8873
34 1 1.7228 -7.8747 -0.8927
35 1 4.0364 -7.9572 -1.9185
36 1 6.0144 -6.4764 -2.9880
37 1 6.8647 -6.4469 -1.4055
38 1 8.7029 -5.9564 -2.8852
39 1 8.0378 -6.9862 -4.1949
40 1 9.5708 -7.7823 -1.7291
41 1 9.4706 -8.6046 -3.3098
42 1 2.0784 -10.2433 -0.7453
43 1 3.5853 -10.6308 1.9775
44 1 2.3149 -11.7652 1.2701
45 1 3.7753 -12.1284 -0.7724
46 1 5.0466 -10.9943 -0.0661
RHF calculation, no. of doubly occupied orbitals= 62
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001744188556.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:36:29
Heat of formation + Delta-G solvation = -121.062210 kcal
Electronic energy + Delta-G solvation = -27482.560661 eV
Core-core repulsion = 23498.123955 eV
Total energy + Delta-G solvation = -3984.436707 eV
No. of doubly occupied orbitals = 62
Molecular weight
(most abundant/longest-lived isotopes) = 342.145 amu
Computer time = 0.85 seconds
Orbital eigenvalues (eV)
-41.62199 -40.62747 -39.77596 -38.16883 -36.29417 -34.72144 -34.56450 -33.12234
-31.86338 -30.73370 -29.18409 -27.63782 -25.05088 -24.10923 -23.22679 -22.61264
-22.03256 -21.51550 -21.25746 -19.86050 -18.75862 -18.01049 -17.76993 -17.26438
-17.20291 -16.86310 -16.63913 -16.39203 -16.29141 -15.95562 -15.75466 -15.26495
-15.00149 -14.68195 -14.44781 -14.31467 -14.20980 -14.00957 -13.34763 -13.15447
-13.10523 -12.98017 -12.85848 -12.75898 -12.67585 -12.61089 -12.30321 -12.26268
-11.84237 -11.74332 -11.36176 -11.26461 -11.11606 -11.00005 -10.92428 -10.41912
-10.25783 -10.16961 -10.12295 -8.64396 -8.33233 -6.10784 1.27674 1.44628
1.47420 1.48721 1.56796 1.61528 1.79576 2.23563 2.29698 2.83016
3.01056 3.03775 3.32956 3.43895 3.48607 3.67147 3.79932 3.92285
3.99102 4.04689 4.10133 4.15489 4.17433 4.21209 4.31980 4.35188
4.43474 4.53236 4.64488 4.76252 4.79928 4.81527 4.83764 4.90963
4.97911 5.01668 5.18929 5.23022 5.27007 5.34754 5.43118 5.43455
5.89031 6.20971 6.43543 6.48190 7.08373 7.18248 7.21705 8.75557
Molecular weight = 342.14amu
Principal moments of inertia in cm(-1)
A = 0.010749 B = 0.002644 C = 0.002173
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2604.287376 B =10587.894527 C =12880.832418
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.911 5.911
2 C 0.014 3.986
3 Si 0.996 3.004
4 H -0.260 1.260
5 H -0.280 1.280
6 H -0.264 1.264
7 C -0.547 4.547
8 H 0.083 0.917
9 S -0.148 6.148
10 C -0.131 4.131
11 C 0.537 3.463
12 O -0.560 6.560
13 N -0.713 5.713
14 C 0.122 3.878
15 C 0.178 3.822
16 H 0.082 0.918
17 N -0.707 5.707
18 C 0.517 3.483
19 O -0.559 6.559
20 C 0.062 3.938
21 H 0.120 0.880
22 C -0.145 4.145
23 C -0.148 4.148
24 C 0.040 3.960
25 O -0.390 6.390
26 C -0.165 4.165
27 C -0.168 4.168
28 C -0.185 4.185
29 H 0.271 0.729
30 H 0.114 0.886
31 H 0.105 0.895
32 H 0.412 0.588
33 H 0.079 0.921
34 H 0.082 0.918
35 H 0.416 0.584
36 H 0.118 0.882
37 H 0.075 0.925
38 H 0.096 0.904
39 H 0.098 0.902
40 H 0.067 0.933
41 H 0.084 0.916
42 H 0.123 0.877
43 H 0.088 0.912
44 H 0.109 0.891
45 H 0.098 0.902
46 H 0.094 0.906
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 16.219 -19.527 -7.582 26.492
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.548 5.548
2 C -0.190 4.190
3 Si 0.817 3.183
4 H -0.185 1.185
5 H -0.206 1.206
6 H -0.189 1.189
7 C -0.695 4.695
8 H 0.101 0.899
9 S 0.079 5.921
10 C -0.282 4.282
11 C 0.323 3.677
12 O -0.438 6.438
13 N -0.367 5.367
14 C -0.002 4.002
15 C 0.073 3.927
16 H 0.101 0.899
17 N -0.361 5.361
18 C 0.304 3.696
19 O -0.437 6.437
20 C 0.002 3.998
21 H 0.137 0.863
22 C -0.183 4.183
23 C -0.185 4.185
24 C -0.036 4.036
25 O -0.309 6.309
26 C -0.185 4.185
27 C -0.206 4.206
28 C -0.222 4.222
29 H 0.080 0.920
30 H 0.132 0.868
31 H 0.123 0.877
32 H 0.249 0.751
33 H 0.097 0.903
34 H 0.101 0.899
35 H 0.253 0.747
36 H 0.136 0.864
37 H 0.094 0.906
38 H 0.115 0.885
39 H 0.116 0.884
40 H 0.085 0.915
41 H 0.102 0.898
42 H 0.141 0.859
43 H 0.106 0.894
44 H 0.127 0.873
45 H 0.116 0.884
46 H 0.112 0.888
Dipole moment (debyes) X Y Z Total
from point charges 14.457 -20.368 -6.776 25.880
hybrid contribution 1.753 1.496 -0.154 2.310
sum 16.210 -18.872 -6.930 25.825
Atomic orbital electron populations
1.70166 1.07946 1.28648 1.47997 1.26092 0.95920 1.03242 0.93791
0.85043 0.77837 0.75871 0.79499 1.18467 1.20556 1.18861 1.23177
0.95355 0.92082 1.58851 0.89893 1.85573 1.10397 0.99095 1.97047
1.23376 1.03606 0.94418 1.06807 1.19988 0.86142 0.86479 0.75058
1.90712 1.17236 1.86004 1.49850 1.45683 1.10146 1.04909 1.75953
1.21601 0.95428 0.79188 1.03953 1.20581 0.89480 0.92117 0.90478
0.89947 1.45875 1.08172 1.61141 1.20930 1.20853 0.82710 0.77568
0.88517 1.90664 1.75934 1.42148 1.34918 1.23014 0.84788 0.96129
0.95916 0.86288 1.23317 0.99910 0.92335 1.02724 1.23134 0.94882
0.98825 1.01651 1.23395 0.91030 0.90653 0.98536 1.88489 1.14377
1.46411 1.81646 1.22588 1.01841 0.90201 1.03840 1.23012 1.02871
1.02515 0.92155 1.23187 0.97648 0.99595 1.01791 0.92020 0.86784
0.87679 0.75143 0.90299 0.89947 0.74713 0.86372 0.90608 0.88541
0.88358 0.91494 0.89761 0.85865 0.89361 0.87259 0.88364 0.88762
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.91 -54.97 13.22 21.65 0.29 -54.68 16
2 C 0.01 0.80 5.49 84.86 0.47 1.27 16
3 Si 1.00 42.50 29.55 68.60 2.03 44.52 16
4 H -0.26 -10.43 7.11 99.48 0.71 -9.73 16
5 H -0.28 -11.74 7.11 99.48 0.71 -11.03 16
6 H -0.26 -10.74 7.11 99.48 0.71 -10.04 16
7 C -0.55 -30.29 9.50 67.95 0.65 -29.65 16
8 H 0.08 4.24 7.80 -2.91 -0.02 4.21 16
9 S -0.15 -7.92 20.57 -56.49 -1.16 -9.08 16
10 C -0.13 -4.81 6.16 71.24 0.44 -4.37 16
11 C 0.54 17.92 7.85 87.66 0.69 18.61 16
12 O -0.56 -23.98 15.86 -3.04 -0.05 -24.02 16
13 N -0.71 -15.40 5.39 -463.05 -2.49 -17.90 16
14 C 0.12 2.26 5.22 86.38 0.45 2.72 16
15 C 0.18 2.85 2.43 44.99 0.11 2.96 16
16 H 0.08 1.63 7.34 -2.38 -0.02 1.62 16
17 N -0.71 -9.38 4.50 -442.53 -1.99 -11.37 16
18 C 0.52 9.45 6.51 87.66 0.57 10.02 16
19 O -0.56 -15.26 13.58 15.42 0.21 -15.05 16
20 C 0.06 0.87 3.86 30.51 0.12 0.99 16
21 H 0.12 1.11 8.14 -2.39 -0.02 1.09 16
22 C -0.15 -1.39 6.56 32.06 0.21 -1.17 16
23 C -0.15 -1.19 7.02 31.86 0.22 -0.97 16
24 C 0.04 0.51 7.79 72.45 0.56 1.08 16
25 O -0.39 -7.88 10.61 -130.50 -1.38 -9.27 16
26 C -0.17 -2.54 5.36 -10.79 -0.06 -2.60 16
27 C -0.17 -2.73 10.18 30.62 0.31 -2.42 16
28 C -0.19 -3.34 9.74 30.62 0.30 -3.04 16
29 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16
30 H 0.11 3.63 8.14 -2.39 -0.02 3.61 16
31 H 0.10 3.55 8.14 -2.39 -0.02 3.53 16
32 H 0.41 6.90 8.14 -92.71 -0.75 6.14 16
33 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16
34 H 0.08 1.49 8.14 -2.38 -0.02 1.47 16
35 H 0.42 3.60 8.60 -92.71 -0.80 2.80 16
36 H 0.12 0.59 8.14 -2.39 -0.02 0.57 16
37 H 0.08 0.90 8.05 -2.39 -0.02 0.88 16
38 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16
39 H 0.10 0.49 8.14 -2.39 -0.02 0.47 16
40 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16
41 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16
42 H 0.12 1.59 8.11 -2.39 -0.02 1.57 16
43 H 0.09 1.57 8.05 -2.39 -0.02 1.56 16
44 H 0.11 1.46 8.14 -2.39 -0.02 1.44 16
45 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16
46 H 0.09 2.24 5.02 -2.38 -0.01 2.23 16
Total: -1.00 -81.03 395.39 -0.07 -81.09
By element:
Atomic # 1 Polarization: 22.88 SS G_CDS: -0.55 Total: 22.34 kcal
Atomic # 6 Polarization: -11.61 SS G_CDS: 5.04 Total: -6.57 kcal
Atomic # 7 Polarization: -79.75 SS G_CDS: -4.20 Total: -83.95 kcal
Atomic # 8 Polarization: -47.12 SS G_CDS: -1.22 Total: -48.34 kcal
Atomic # 14 Polarization: 42.50 SS G_CDS: 2.03 Total: 44.52 kcal
Atomic # 16 Polarization: -7.92 SS G_CDS: -1.16 Total: -9.08 kcal
Total: -81.03 -0.07 -81.09 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001744188556.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -39.971 kcal
(2) G-P(sol) polarization free energy of solvation -81.026 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.997 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.065 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.091 kcal
(6) G-S(sol) free energy of system = (1) + (5) -121.062 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.85 seconds