Wall clock time and date at job start Sat Apr 11 2020 06:32:27
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53004 * 1
3 3 C 1.53001 * 109.47133 * 2 1
4 4 C 1.52994 * 109.47271 * 185.00352 * 3 2 1
5 5 O 1.42902 * 109.47008 * 179.97438 * 4 3 2
6 6 C 1.53002 * 109.47152 * 65.00261 * 3 2 1
7 7 O 1.42899 * 109.46994 * 60.00203 * 6 3 2
8 8 N 1.46512 * 109.47141 * 305.00537 * 3 2 1
9 9 C 1.34777 * 119.99788 * 300.00017 * 8 3 2
10 10 O 1.21600 * 120.00058 * 359.97438 * 9 8 3
11 11 N 1.34771 * 120.00035 * 180.27641 * 9 8 3
12 12 C 1.40138 * 120.00166 * 174.05264 * 11 9 8
13 13 C 1.38694 * 120.07209 * 335.23100 * 12 11 9
14 14 C 1.38203 * 120.01409 * 179.71932 * 13 12 11
15 15 C 1.38538 * 120.17789 * 0.55532 * 14 13 12
16 16 F 1.35105 * 119.92759 * 179.74374 * 15 14 13
17 17 C 1.38343 * 120.15214 * 359.72250 * 15 14 13
18 18 C 1.38741 * 119.97488 * 359.97438 * 17 15 14
19 19 O 1.35783 * 120.08715 * 180.02562 * 18 17 15
20 20 C 1.34808 * 116.99771 * 5.20572 * 19 18 17
21 21 H 1.08003 * 120.00234 * 354.97460 * 20 19 18
22 22 C 1.38635 * 120.00004 * 174.97560 * 20 19 18
23 23 N 1.31568 * 120.00275 * 179.97438 * 22 20 19
24 24 Si 1.86801 * 119.99860 * 0.02562 * 22 20 19
25 25 H 1.48494 * 109.47493 * 89.99974 * 24 22 20
26 26 H 1.48500 * 109.46898 * 209.99949 * 24 22 20
27 27 H 1.48505 * 109.47169 * 329.99710 * 24 22 20
28 28 H 1.09005 * 109.46330 * 299.99645 * 1 2 3
29 29 H 1.08998 * 109.47290 * 59.99897 * 1 2 3
30 30 H 1.09001 * 109.46876 * 180.02562 * 1 2 3
31 31 H 1.09005 * 109.46779 * 240.00644 * 2 1 3
32 32 H 1.08998 * 109.47290 * 120.00102 * 2 1 3
33 33 H 1.08995 * 109.47537 * 299.99917 * 4 3 2
34 34 H 1.09008 * 109.47306 * 60.00264 * 4 3 2
35 35 H 0.96705 * 113.99499 * 180.02562 * 5 4 3
36 36 H 1.09001 * 109.47136 * 180.02562 * 6 3 2
37 37 H 1.09003 * 109.46961 * 300.00073 * 6 3 2
38 38 H 0.96700 * 113.99724 * 180.02562 * 7 6 3
39 39 H 0.96998 * 120.00122 * 120.00088 * 8 3 2
40 40 H 0.97002 * 119.99705 * 354.05574 * 11 9 8
41 41 H 1.07999 * 119.99259 * 359.97438 * 13 12 11
42 42 H 1.08002 * 119.90963 * 180.25088 * 14 13 12
43 43 H 1.08002 * 120.01361 * 180.02562 * 17 15 14
44 44 H 0.96998 * 120.00116 * 179.97438 * 23 22 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 6 3.5648 1.4444 -0.1258
5 8 4.0410 2.7917 -0.1264
6 6 1.6353 2.1265 1.3074
7 8 2.2052 1.4199 2.4109
8 7 1.4557 2.1671 -1.1314
9 6 1.6790 1.7428 -2.3910
10 8 2.3658 0.7589 -2.5884
11 7 1.1462 2.4125 -3.4321
12 6 1.4783 2.0478 -4.7438
13 6 2.6765 1.3990 -5.0025
14 6 3.0003 1.0348 -6.2958
15 6 2.1358 1.3260 -7.3384
16 9 2.4597 0.9722 -8.6015
17 6 0.9413 1.9781 -7.0893
18 6 0.6071 2.3411 -5.7926
19 8 -0.5648 2.9806 -5.5454
20 6 -1.4077 3.1375 -6.5857
21 1 -1.1042 2.8348 -7.5770
22 6 -2.6641 3.6875 -6.3831
23 7 -3.4865 3.8411 -7.3985
24 14 -3.1887 4.2117 -4.6687
25 1 -2.8055 5.6289 -4.4454
26 1 -4.6611 4.0704 -4.5368
27 1 -2.5167 3.3525 -3.6609
28 1 -0.3632 0.5138 0.8901
29 1 -0.3634 0.5138 -0.8899
30 1 -0.3633 -1.0277 0.0005
31 1 1.8933 -0.5138 -0.8901
32 1 1.8934 -0.5138 0.8899
33 1 3.9995 0.9054 0.7159
34 1 3.8532 0.9571 -1.0573
35 1 5.0018 2.8692 -0.2039
36 1 1.9983 3.1544 1.3072
37 1 0.5490 2.1252 1.3970
38 1 1.9893 1.7985 3.2741
39 1 0.9083 2.9522 -0.9740
40 1 0.5328 3.1470 -3.2735
41 1 3.3549 1.1748 -4.1926
42 1 3.9319 0.5260 -6.4948
43 1 0.2689 2.2037 -7.9037
44 1 -4.3657 4.2255 -7.2567
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000783063730.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:32:27
Heat of formation + Delta-G solvation = -161.099923 kcal
Electronic energy + Delta-G solvation = -31048.988761 eV
Core-core repulsion = 26496.602713 eV
Total energy + Delta-G solvation = -4552.386048 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 342.147 amu
Computer time = 0.48 seconds
Orbital eigenvalues (eV)
-48.25298 -40.80880 -39.42473 -38.16246 -36.55551 -36.28011 -35.14489 -34.21451
-32.51056 -32.14269 -29.63206 -29.35802 -27.97746 -26.33726 -25.42386 -23.30977
-22.82600 -21.76649 -20.88716 -19.62561 -18.38942 -18.26815 -17.85099 -17.76425
-17.32160 -16.71694 -15.84403 -15.64693 -15.40929 -15.35620 -14.99745 -14.94662
-14.67809 -14.15676 -13.95433 -13.91196 -13.72972 -13.53570 -13.38919 -13.30622
-13.19214 -12.61074 -12.45316 -12.31174 -11.95659 -11.84393 -11.59432 -11.43789
-11.14977 -10.98122 -10.83886 -10.64751 -10.47683 -10.38522 -10.13048 -9.77141
-9.68588 -9.40714 -9.05934 -9.00258 -7.94533 -7.16168 -6.53904 -4.21004
1.78191 2.03414 2.60142 3.09673 3.12364 3.21641 3.31858 3.90156
4.08298 4.12720 4.25761 4.29288 4.54048 4.63983 4.76091 4.95153
4.95495 5.01471 5.20623 5.31539 5.37609 5.45088 5.46510 5.55303
5.70205 5.77284 5.79587 5.92262 5.97914 6.07679 6.14372 6.28324
6.44659 6.55261 6.62674 6.83210 6.89650 7.01237 7.12808 7.26192
7.47309 7.52408 7.66206 7.88097 8.11531 8.70785 8.79283 9.34398
10.53463
Molecular weight = 342.15amu
Principal moments of inertia in cm(-1)
A = 0.010154 B = 0.003986 C = 0.003088
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2756.775095 B = 7022.054647 C = 9066.570735
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.146 4.146
2 C -0.133 4.133
3 C 0.208 3.792
4 C 0.065 3.935
5 O -0.571 6.571
6 C 0.077 3.923
7 O -0.563 6.563
8 N -0.730 5.730
9 C 0.714 3.286
10 O -0.577 6.577
11 N -0.666 5.666
12 C 0.087 3.913
13 C -0.063 4.063
14 C -0.216 4.216
15 C 0.123 3.877
16 F -0.150 7.150
17 C -0.243 4.243
18 C 0.160 3.840
19 O -0.212 6.212
20 C -0.390 4.390
21 H 0.109 0.891
22 C 0.066 3.934
23 N -0.873 5.873
24 Si 0.905 3.095
25 H -0.272 1.272
26 H -0.281 1.281
27 H -0.261 1.261
28 H 0.049 0.951
29 H 0.055 0.945
30 H 0.055 0.945
31 H 0.090 0.910
32 H 0.076 0.924
33 H 0.056 0.944
34 H 0.073 0.927
35 H 0.376 0.624
36 H 0.060 0.940
37 H 0.053 0.947
38 H 0.382 0.618
39 H 0.396 0.604
40 H 0.408 0.592
41 H 0.151 0.849
42 H 0.124 0.876
43 H 0.149 0.851
44 H 0.281 0.719
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 10.393 -2.204 17.798 20.727
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.203 4.203
2 C -0.171 4.171
3 C 0.121 3.879
4 C -0.014 4.014
5 O -0.376 6.376
6 C -0.001 4.001
7 O -0.368 6.368
8 N -0.386 5.386
9 C 0.415 3.585
10 O -0.456 6.456
11 N -0.312 5.312
12 C -0.008 4.008
13 C -0.084 4.084
14 C -0.237 4.237
15 C 0.103 3.897
16 F -0.129 7.129
17 C -0.263 4.263
18 C 0.105 3.895
19 O -0.117 6.117
20 C -0.465 4.465
21 H 0.126 0.874
22 C -0.138 4.138
23 N -0.510 5.510
24 Si 0.731 3.269
25 H -0.198 1.198
26 H -0.207 1.207
27 H -0.185 1.185
28 H 0.069 0.931
29 H 0.074 0.926
30 H 0.074 0.926
31 H 0.108 0.892
32 H 0.095 0.905
33 H 0.074 0.926
34 H 0.091 0.909
35 H 0.223 0.777
36 H 0.078 0.922
37 H 0.071 0.929
38 H 0.229 0.771
39 H 0.230 0.770
40 H 0.243 0.757
41 H 0.168 0.832
42 H 0.142 0.858
43 H 0.166 0.834
44 H 0.091 0.909
Dipole moment (debyes) X Y Z Total
from point charges 10.280 -3.165 17.339 20.404
hybrid contribution -0.710 1.222 0.710 1.582
sum 9.570 -1.943 18.049 20.521
Atomic orbital electron populations
1.21704 0.95342 1.01767 1.01497 1.21865 0.96499 0.94678 1.04070
1.19958 0.91624 0.92417 0.83910 1.22617 0.93430 0.83624 1.01680
1.86397 1.26869 1.26978 1.97326 1.22146 0.96781 0.95157 0.86017
1.86394 1.76765 1.56939 1.16679 1.44852 1.56624 1.33117 1.03983
1.15667 0.80443 0.82423 0.79959 1.90787 1.43617 1.27335 1.83867
1.42248 1.49241 1.36496 1.03241 1.16692 0.95103 1.07948 0.81059
1.20797 0.94129 0.96973 0.96455 1.20558 1.01475 1.09809 0.91834
1.17464 0.94790 0.98897 0.78586 1.91424 1.92819 1.90169 1.38443
1.20949 0.98699 1.08726 0.97960 1.18395 0.86655 0.93180 0.91222
1.83487 1.24162 1.65723 1.38333 1.20750 0.94852 1.42928 0.87961
0.87390 1.24458 0.94208 0.96022 0.99161 1.69641 1.08385 1.42260
1.30725 0.86199 0.77922 0.79484 0.83340 1.19770 1.20674 1.18489
0.93150 0.92571 0.92600 0.89189 0.90514 0.92621 0.90935 0.77726
0.92206 0.92894 0.77056 0.77039 0.75679 0.83195 0.85827 0.83381
0.90854
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.65 9.46 37.16 0.35 -1.30 16
2 C -0.13 -1.56 4.60 -26.73 -0.12 -1.68 16
3 C 0.21 2.32 0.36 -131.81 -0.05 2.27 16
4 C 0.07 0.75 5.59 37.15 0.21 0.96 16
5 O -0.57 -6.23 12.85 -35.23 -0.45 -6.69 16
6 C 0.08 0.68 5.64 37.16 0.21 0.89 16
7 O -0.56 -4.57 12.23 -35.23 -0.43 -5.00 16
8 N -0.73 -8.90 4.05 -52.41 -0.21 -9.11 16
9 C 0.71 11.16 7.57 -86.92 -0.66 10.50 16
10 O -0.58 -10.08 9.77 5.28 0.05 -10.02 16
11 N -0.67 -11.27 5.30 -14.07 -0.07 -11.35 16
12 C 0.09 1.69 6.45 -83.44 -0.54 1.15 16
13 C -0.06 -1.15 8.71 -39.43 -0.34 -1.49 16
14 C -0.22 -3.88 10.02 -39.48 -0.40 -4.28 16
15 C 0.12 2.42 7.29 -39.43 -0.29 2.13 16
16 F -0.15 -2.88 17.26 2.25 0.04 -2.85 16
17 C -0.24 -5.25 9.14 -39.36 -0.36 -5.61 16
18 C 0.16 3.51 6.66 -38.94 -0.26 3.25 16
19 O -0.21 -5.10 8.00 0.01 0.00 -5.10 16
20 C -0.39 -10.37 9.94 30.88 0.31 -10.07 16
21 H 0.11 2.99 5.44 -52.48 -0.29 2.71 16
22 C 0.07 1.74 5.49 -17.52 -0.10 1.65 16
23 N -0.87 -24.26 13.96 55.48 0.77 -23.48 16
24 Si 0.91 20.02 28.62 -169.99 -4.86 15.16 16
25 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16
26 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16
27 H -0.26 -5.58 7.11 56.52 0.40 -5.18 16
28 H 0.05 0.49 6.56 -51.93 -0.34 0.15 16
29 H 0.06 0.73 7.29 -51.93 -0.38 0.35 16
30 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16
31 H 0.09 1.28 6.32 -51.93 -0.33 0.95 16
32 H 0.08 0.84 7.54 -51.93 -0.39 0.45 16
33 H 0.06 0.60 7.68 -51.93 -0.40 0.20 16
34 H 0.07 0.98 6.16 -51.92 -0.32 0.66 16
35 H 0.38 2.70 9.12 45.56 0.42 3.12 16
36 H 0.06 0.53 7.68 -51.93 -0.40 0.13 16
37 H 0.05 0.41 6.57 -51.93 -0.34 0.07 16
38 H 0.38 1.41 9.12 45.56 0.42 1.82 16
39 H 0.40 4.07 8.49 -40.82 -0.35 3.73 16
40 H 0.41 6.45 8.36 -40.82 -0.34 6.11 16
41 H 0.15 2.65 5.78 -52.49 -0.30 2.35 16
42 H 0.12 1.91 8.06 -52.49 -0.42 1.48 16
43 H 0.15 3.37 5.63 -52.49 -0.30 3.07 16
44 H 0.28 7.21 8.31 -40.82 -0.34 6.87 16
LS Contribution 362.55 15.07 5.46 5.46
Total: -1.00 -31.20 362.55 -5.36 -36.56
By element:
Atomic # 1 Polarization: 21.65 SS G_CDS: -3.62 Total: 18.03 kcal
Atomic # 6 Polarization: 0.41 SS G_CDS: -2.03 Total: -1.62 kcal
Atomic # 7 Polarization: -44.43 SS G_CDS: 0.49 Total: -43.94 kcal
Atomic # 8 Polarization: -25.98 SS G_CDS: -0.83 Total: -26.81 kcal
Atomic # 9 Polarization: -2.88 SS G_CDS: 0.04 Total: -2.85 kcal
Atomic # 14 Polarization: 20.02 SS G_CDS: -4.86 Total: 15.16 kcal
Total LS contribution 5.46 Total: 5.46 kcal
Total: -31.20 -5.36 -36.56 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000783063730.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -124.536 kcal
(2) G-P(sol) polarization free energy of solvation -31.205 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.741 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.359 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.564 kcal
(6) G-S(sol) free energy of system = (1) + (5) -161.100 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.48 seconds