Wall clock time and date at job start Sat Apr 11 2020 06:32:27
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53004 * 1
3 3 C 1.53001 * 109.47133 * 2 1
4 4 C 1.52994 * 109.47271 * 185.00352 * 3 2 1
5 5 O 1.42902 * 109.47008 * 179.97438 * 4 3 2
6 6 C 1.53002 * 109.47152 * 65.00261 * 3 2 1
7 7 O 1.42899 * 109.46994 * 60.00203 * 6 3 2
8 8 N 1.46512 * 109.47141 * 305.00537 * 3 2 1
9 9 C 1.34777 * 119.99788 * 300.00017 * 8 3 2
10 10 O 1.21600 * 120.00058 * 359.97438 * 9 8 3
11 11 N 1.34771 * 120.00035 * 180.27641 * 9 8 3
12 12 C 1.40138 * 120.00166 * 174.05264 * 11 9 8
13 13 C 1.38694 * 120.07209 * 335.23100 * 12 11 9
14 14 C 1.38203 * 120.01409 * 179.71932 * 13 12 11
15 15 C 1.38538 * 120.17789 * 0.55532 * 14 13 12
16 16 F 1.35105 * 119.92759 * 179.74374 * 15 14 13
17 17 C 1.38343 * 120.15214 * 359.72250 * 15 14 13
18 18 C 1.38741 * 119.97488 * 359.97438 * 17 15 14
19 19 O 1.35783 * 120.08715 * 180.02562 * 18 17 15
20 20 C 1.34808 * 116.99771 * 5.20572 * 19 18 17
21 21 H 1.08003 * 120.00234 * 354.97460 * 20 19 18
22 22 C 1.38635 * 120.00004 * 174.97560 * 20 19 18
23 23 N 1.31568 * 120.00275 * 179.97438 * 22 20 19
24 24 Si 1.86801 * 119.99860 * 0.02562 * 22 20 19
25 25 H 1.48494 * 109.47493 * 89.99974 * 24 22 20
26 26 H 1.48500 * 109.46898 * 209.99949 * 24 22 20
27 27 H 1.48505 * 109.47169 * 329.99710 * 24 22 20
28 28 H 1.09005 * 109.46330 * 299.99645 * 1 2 3
29 29 H 1.08998 * 109.47290 * 59.99897 * 1 2 3
30 30 H 1.09001 * 109.46876 * 180.02562 * 1 2 3
31 31 H 1.09005 * 109.46779 * 240.00644 * 2 1 3
32 32 H 1.08998 * 109.47290 * 120.00102 * 2 1 3
33 33 H 1.08995 * 109.47537 * 299.99917 * 4 3 2
34 34 H 1.09008 * 109.47306 * 60.00264 * 4 3 2
35 35 H 0.96705 * 113.99499 * 180.02562 * 5 4 3
36 36 H 1.09001 * 109.47136 * 180.02562 * 6 3 2
37 37 H 1.09003 * 109.46961 * 300.00073 * 6 3 2
38 38 H 0.96700 * 113.99724 * 180.02562 * 7 6 3
39 39 H 0.96998 * 120.00122 * 120.00088 * 8 3 2
40 40 H 0.97002 * 119.99705 * 354.05574 * 11 9 8
41 41 H 1.07999 * 119.99259 * 359.97438 * 13 12 11
42 42 H 1.08002 * 119.90963 * 180.25088 * 14 13 12
43 43 H 1.08002 * 120.01361 * 180.02562 * 17 15 14
44 44 H 0.96998 * 120.00116 * 179.97438 * 23 22 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 6 3.5648 1.4444 -0.1258
5 8 4.0410 2.7917 -0.1264
6 6 1.6353 2.1265 1.3074
7 8 2.2052 1.4199 2.4109
8 7 1.4557 2.1671 -1.1314
9 6 1.6790 1.7428 -2.3910
10 8 2.3658 0.7589 -2.5884
11 7 1.1462 2.4125 -3.4321
12 6 1.4783 2.0478 -4.7438
13 6 2.6765 1.3990 -5.0025
14 6 3.0003 1.0348 -6.2958
15 6 2.1358 1.3260 -7.3384
16 9 2.4597 0.9722 -8.6015
17 6 0.9413 1.9781 -7.0893
18 6 0.6071 2.3411 -5.7926
19 8 -0.5648 2.9806 -5.5454
20 6 -1.4077 3.1375 -6.5857
21 1 -1.1042 2.8348 -7.5770
22 6 -2.6641 3.6875 -6.3831
23 7 -3.4865 3.8411 -7.3985
24 14 -3.1887 4.2117 -4.6687
25 1 -2.8055 5.6289 -4.4454
26 1 -4.6611 4.0704 -4.5368
27 1 -2.5167 3.3525 -3.6609
28 1 -0.3632 0.5138 0.8901
29 1 -0.3634 0.5138 -0.8899
30 1 -0.3633 -1.0277 0.0005
31 1 1.8933 -0.5138 -0.8901
32 1 1.8934 -0.5138 0.8899
33 1 3.9995 0.9054 0.7159
34 1 3.8532 0.9571 -1.0573
35 1 5.0018 2.8692 -0.2039
36 1 1.9983 3.1544 1.3072
37 1 0.5490 2.1252 1.3970
38 1 1.9893 1.7985 3.2741
39 1 0.9083 2.9522 -0.9740
40 1 0.5328 3.1470 -3.2735
41 1 3.3549 1.1748 -4.1926
42 1 3.9319 0.5260 -6.4948
43 1 0.2689 2.2037 -7.9037
44 1 -4.3657 4.2255 -7.2567
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000783063730.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:32:27
Heat of formation + Delta-G solvation = -187.148496 kcal
Electronic energy + Delta-G solvation = -31050.118312 eV
Core-core repulsion = 26496.602713 eV
Total energy + Delta-G solvation = -4553.515599 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 342.147 amu
Computer time = 0.76 seconds
Orbital eigenvalues (eV)
-49.83271 -42.05495 -40.88308 -39.31840 -38.03738 -37.06666 -36.08447 -35.58677
-34.46786 -33.20756 -31.21365 -30.48144 -29.34378 -27.32377 -27.08379 -24.43157
-24.07308 -23.35816 -22.22270 -20.68819 -20.09223 -19.72588 -19.37225 -18.49391
-18.18934 -18.06978 -17.31755 -16.99630 -16.65623 -16.53776 -16.30765 -16.18643
-15.87997 -15.83439 -15.59459 -15.23711 -15.03588 -14.89103 -14.63318 -14.31057
-14.24310 -14.06678 -13.81756 -13.59405 -13.35923 -13.14375 -12.80286 -12.64528
-12.45298 -12.37064 -12.16651 -12.03919 -11.66953 -11.57274 -11.40168 -11.07740
-10.93300 -10.79172 -10.56944 -10.11044 -9.59654 -8.73440 -8.51106 -6.25050
0.18909 0.41261 1.32815 1.38262 1.46288 1.51485 2.03459 2.26497
2.66855 2.76050 2.97777 3.04510 3.22175 3.39708 3.50620 3.83555
3.89523 4.04044 4.14713 4.19372 4.28410 4.34339 4.51470 4.51958
4.59069 4.61601 4.63569 4.85122 4.91832 4.94816 5.07993 5.11979
5.18109 5.21166 5.31329 5.36413 5.48498 5.55581 5.63054 5.82679
5.91907 6.10250 6.80637 6.85069 6.87732 6.95756 7.40131 7.50439
8.59966
Molecular weight = 342.15amu
Principal moments of inertia in cm(-1)
A = 0.010154 B = 0.003986 C = 0.003088
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2756.775095 B = 7022.054647 C = 9066.570735
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.143 4.143
2 C -0.127 4.127
3 C 0.200 3.800
4 C 0.071 3.929
5 O -0.579 6.579
6 C 0.087 3.913
7 O -0.574 6.574
8 N -0.714 5.714
9 C 0.713 3.287
10 O -0.595 6.595
11 N -0.668 5.668
12 C 0.101 3.899
13 C -0.062 4.062
14 C -0.188 4.188
15 C 0.111 3.889
16 F -0.147 7.147
17 C -0.253 4.253
18 C 0.134 3.866
19 O -0.222 6.222
20 C -0.401 4.401
21 H 0.079 0.921
22 C 0.012 3.988
23 N -0.921 5.921
24 Si 0.972 3.028
25 H -0.260 1.260
26 H -0.275 1.275
27 H -0.249 1.249
28 H 0.070 0.930
29 H 0.036 0.964
30 H 0.055 0.945
31 H 0.062 0.938
32 H 0.085 0.915
33 H 0.064 0.936
34 H 0.050 0.950
35 H 0.392 0.608
36 H 0.062 0.938
37 H 0.067 0.933
38 H 0.403 0.597
39 H 0.408 0.592
40 H 0.414 0.586
41 H 0.165 0.835
42 H 0.159 0.841
43 H 0.126 0.874
44 H 0.286 0.714
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 11.763 -2.199 21.167 24.316
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.200 4.200
2 C -0.166 4.166
3 C 0.114 3.886
4 C -0.008 4.008
5 O -0.387 6.387
6 C 0.008 3.992
7 O -0.383 6.383
8 N -0.370 5.370
9 C 0.414 3.586
10 O -0.475 6.475
11 N -0.315 5.315
12 C 0.004 3.996
13 C -0.083 4.083
14 C -0.208 4.208
15 C 0.091 3.909
16 F -0.126 7.126
17 C -0.274 4.274
18 C 0.082 3.918
19 O -0.129 6.129
20 C -0.477 4.477
21 H 0.096 0.904
22 C -0.187 4.187
23 N -0.561 5.561
24 Si 0.793 3.207
25 H -0.185 1.185
26 H -0.200 1.200
27 H -0.173 1.173
28 H 0.089 0.911
29 H 0.055 0.945
30 H 0.075 0.925
31 H 0.080 0.920
32 H 0.104 0.896
33 H 0.082 0.918
34 H 0.068 0.932
35 H 0.241 0.759
36 H 0.080 0.920
37 H 0.085 0.915
38 H 0.253 0.747
39 H 0.243 0.757
40 H 0.250 0.750
41 H 0.182 0.818
42 H 0.177 0.823
43 H 0.144 0.856
44 H 0.095 0.905
Dipole moment (debyes) X Y Z Total
from point charges 11.695 -3.153 20.762 24.037
hybrid contribution -0.857 1.079 -0.314 1.413
sum 10.838 -2.075 20.448 23.236
Atomic orbital electron populations
1.21679 0.94935 1.01892 1.01486 1.21778 0.96755 0.94954 1.03090
1.20143 0.91536 0.92270 0.84688 1.22472 0.93680 0.83830 1.00783
1.86357 1.28549 1.26499 1.97262 1.21988 0.97532 0.94698 0.84961
1.86345 1.76937 1.57301 1.17676 1.44759 1.56021 1.33213 1.03020
1.15752 0.80136 0.82097 0.80585 1.90778 1.44350 1.28066 1.84294
1.42273 1.49647 1.36911 1.02648 1.16827 0.94587 1.06411 0.81735
1.21035 0.93789 0.96437 0.96991 1.20947 1.01709 1.07297 0.90842
1.17504 0.94625 0.99463 0.79307 1.91428 1.92690 1.90133 1.38374
1.20949 0.99405 1.09428 0.97630 1.18697 0.86652 0.94345 0.92120
1.83437 1.24798 1.67663 1.36999 1.20638 0.95859 1.43456 0.87718
0.90379 1.25332 0.93965 0.95957 1.03444 1.69742 1.09104 1.44156
1.33057 0.85205 0.77654 0.79644 0.78224 1.18505 1.20048 1.17293
0.91079 0.94503 0.92544 0.91976 0.89603 0.91834 0.93214 0.75913
0.91970 0.91482 0.74669 0.75675 0.75041 0.81805 0.82324 0.85634
0.90481
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.92 9.46 71.98 0.68 -2.24 16
2 C -0.13 -2.75 4.60 30.60 0.14 -2.61 16
3 C 0.20 3.98 0.36 3.60 0.00 3.98 16
4 C 0.07 1.48 5.59 71.98 0.40 1.88 16
5 O -0.58 -11.17 12.85 -148.98 -1.91 -13.08 16
6 C 0.09 1.23 5.64 71.98 0.41 1.63 16
7 O -0.57 -7.30 12.23 -148.98 -1.82 -9.12 16
8 N -0.71 -15.81 4.05 -437.98 -1.77 -17.58 16
9 C 0.71 21.09 7.57 179.06 1.36 22.44 16
10 O -0.59 -19.88 9.77 -4.03 -0.04 -19.92 16
11 N -0.67 -21.68 5.30 -316.70 -1.68 -23.36 16
12 C 0.10 3.82 6.45 38.22 0.25 4.07 16
13 C -0.06 -2.13 8.71 22.37 0.19 -1.94 16
14 C -0.19 -6.30 10.02 22.33 0.22 -6.07 16
15 C 0.11 4.33 7.29 22.37 0.16 4.49 16
16 F -0.15 -5.60 17.26 44.97 0.78 -4.83 16
17 C -0.25 -11.33 9.14 22.42 0.20 -11.12 16
18 C 0.13 5.98 6.66 22.68 0.15 6.13 16
19 O -0.22 -10.92 8.00 -22.88 -0.18 -11.10 16
20 C -0.40 -22.32 9.94 67.91 0.68 -21.64 16
21 H 0.08 4.68 5.44 -2.91 -0.02 4.66 16
22 C 0.01 0.66 5.49 84.83 0.47 1.13 16
23 N -0.92 -53.17 13.96 21.61 0.30 -52.86 16
24 Si 0.97 41.34 28.62 68.60 1.96 43.30 16
25 H -0.26 -10.48 7.11 99.48 0.71 -9.78 16
26 H -0.28 -11.32 7.11 99.48 0.71 -10.61 16
27 H -0.25 -10.00 7.11 99.48 0.71 -9.29 16
28 H 0.07 1.15 6.56 -2.38 -0.02 1.13 16
29 H 0.04 0.89 7.29 -2.39 -0.02 0.87 16
30 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16
31 H 0.06 1.71 6.32 -2.38 -0.02 1.69 16
32 H 0.09 1.70 7.54 -2.39 -0.02 1.68 16
33 H 0.06 1.22 7.68 -2.39 -0.02 1.20 16
34 H 0.05 1.27 6.16 -2.38 -0.01 1.26 16
35 H 0.39 4.68 9.12 -74.05 -0.68 4.00 16
36 H 0.06 0.88 7.68 -2.39 -0.02 0.86 16
37 H 0.07 0.77 6.57 -2.39 -0.02 0.76 16
38 H 0.40 1.46 9.12 -74.06 -0.68 0.78 16
39 H 0.41 7.26 8.49 -92.71 -0.79 6.47 16
40 H 0.41 12.46 8.36 -92.71 -0.78 11.69 16
41 H 0.16 5.35 5.78 -2.91 -0.02 5.33 16
42 H 0.16 4.24 8.06 -2.91 -0.02 4.22 16
43 H 0.13 6.16 5.63 -2.91 -0.02 6.14 16
44 H 0.29 15.12 8.31 -92.71 -0.77 14.35 16
Total: -1.00 -69.06 362.55 -0.84 -69.90
By element:
Atomic # 1 Polarization: 40.32 SS G_CDS: -1.79 Total: 38.53 kcal
Atomic # 6 Polarization: -5.19 SS G_CDS: 5.31 Total: 0.12 kcal
Atomic # 7 Polarization: -90.66 SS G_CDS: -3.15 Total: -93.80 kcal
Atomic # 8 Polarization: -49.27 SS G_CDS: -3.96 Total: -53.23 kcal
Atomic # 9 Polarization: -5.60 SS G_CDS: 0.78 Total: -4.83 kcal
Atomic # 14 Polarization: 41.34 SS G_CDS: 1.96 Total: 43.30 kcal
Total: -69.06 -0.84 -69.90 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000783063730.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -117.246 kcal
(2) G-P(sol) polarization free energy of solvation -69.061 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -186.307 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.842 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.903 kcal
(6) G-S(sol) free energy of system = (1) + (5) -187.148 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.76 seconds