Wall clock time and date at job start Sat Apr 11 2020 06:32:34
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50698 * 1
3 3 C 1.39797 * 126.51480 * 2 1
4 4 C 1.35478 * 107.84345 * 179.97438 * 3 2 1
5 5 N 1.34958 * 108.98627 * 359.72939 * 4 3 2
6 6 C 1.46503 * 125.63984 * 180.29913 * 5 4 3
7 7 C 1.37696 * 108.72689 * 0.44053 * 5 4 3
8 8 C 1.46492 * 126.26485 * 179.82839 * 7 5 4
9 9 O 1.21627 * 120.00276 * 179.68886 * 8 7 5
10 10 O 1.34896 * 120.00052 * 359.68914 * 8 7 5
11 11 C 1.45200 * 116.99987 * 180.02562 * 10 8 7
12 12 C 1.50699 * 109.46910 * 179.97438 * 11 10 8
13 13 O 1.21282 * 120.00163 * 4.97627 * 12 11 10
14 14 N 1.34778 * 120.00397 * 184.97613 * 12 11 10
15 15 C 1.37146 * 119.99243 * 4.58711 * 14 12 11
16 16 H 1.07993 * 120.00117 * 311.70397 * 15 14 12
17 17 C 1.38894 * 119.99668 * 131.70900 * 15 14 12
18 18 N 1.31415 * 120.00107 * 352.02317 * 17 15 14
19 19 Si 1.86798 * 119.99602 * 172.02225 * 17 15 14
20 20 H 1.48502 * 109.47247 * 59.99867 * 19 17 15
21 21 H 1.48500 * 109.46843 * 179.97438 * 19 17 15
22 22 H 1.48502 * 109.47474 * 299.99541 * 19 17 15
23 23 C 1.39786 * 120.00372 * 184.58540 * 14 12 11
24 24 C 1.38962 * 120.07445 * 172.06143 * 23 14 12
25 25 C 1.38085 * 119.91753 * 180.23282 * 24 23 14
26 26 C 1.38311 * 120.07844 * 359.47693 * 25 24 23
27 27 C 1.38311 * 120.15482 * 0.54699 * 26 25 24
28 28 C 1.38082 * 120.07765 * 359.70627 * 27 26 25
29 29 H 1.08995 * 109.47803 * 270.02692 * 1 2 3
30 30 H 1.09005 * 109.47121 * 30.02718 * 1 2 3
31 31 H 1.09004 * 109.47259 * 150.02630 * 1 2 3
32 32 H 1.07998 * 126.07883 * 359.95891 * 3 2 1
33 33 H 1.08006 * 125.50883 * 179.97438 * 4 3 2
34 34 H 1.08998 * 109.47067 * 270.16243 * 6 5 4
35 35 H 1.09002 * 109.47168 * 30.16192 * 6 5 4
36 36 H 1.08999 * 109.47435 * 150.16180 * 6 5 4
37 37 H 1.09001 * 109.47118 * 60.00470 * 11 10 8
38 38 H 1.08999 * 109.47119 * 299.99626 * 11 10 8
39 39 H 0.97003 * 120.00419 * 185.01307 * 18 17 15
40 40 H 1.07996 * 120.03985 * 359.96437 * 24 23 14
41 41 H 1.07997 * 119.95883 * 179.75232 * 25 24 23
42 42 H 1.07998 * 119.91774 * 180.25430 * 26 25 24
43 43 H 1.07994 * 119.96000 * 179.72467 * 27 26 25
44 44 H 1.07997 * 120.03878 * 179.97438 * 28 27 26
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.3388 1.1235 0.0000
4 6 3.6223 0.6898 0.0006
5 7 3.6297 -0.6597 0.0070
6 6 4.8250 -1.5068 0.0158
7 6 2.3281 -1.1090 0.0006
8 6 1.8944 -2.5082 0.0008
9 8 0.7083 -2.7773 0.0004
10 8 2.8106 -3.4984 0.0014
11 6 2.3087 -4.8609 0.0010
12 6 3.4683 -5.8233 0.0011
13 8 4.6032 -5.4055 0.0926
14 7 3.2443 -7.1485 -0.1005
15 6 1.9700 -7.6152 -0.2984
16 1 1.1602 -7.2520 0.3169
17 6 1.7210 -8.5552 -1.2902
18 7 2.6693 -8.8810 -2.1397
19 14 0.0382 -9.3561 -1.4164
20 1 -0.9915 -8.3110 -1.6459
21 1 0.0304 -10.3154 -2.5500
22 1 -0.2623 -10.0784 -0.1542
23 6 4.3108 -8.0470 -0.0041
24 6 4.0665 -9.4136 0.0572
25 6 5.1222 -10.2981 0.1572
26 6 6.4219 -9.8259 0.1855
27 6 6.6686 -8.4663 0.1251
28 6 5.6176 -7.5758 0.0303
29 1 -0.3634 0.0005 1.0276
30 1 -0.3633 0.8898 -0.5143
31 1 -0.3634 -0.8902 -0.5134
32 1 2.0157 2.1541 -0.0006
33 1 4.4981 1.3219 0.0003
34 1 5.1273 -1.7193 -1.0096
35 1 5.6331 -0.9895 0.5330
36 1 4.6040 -2.4418 0.5306
37 1 1.7016 -5.0242 -0.8895
38 1 1.7003 -5.0242 0.8905
39 1 2.4753 -9.4819 -2.8761
40 1 3.0521 -9.7833 0.0310
41 1 4.9330 -11.3601 0.2089
42 1 7.2458 -10.5202 0.2596
43 1 7.6844 -8.1008 0.1519
44 1 5.8109 -6.5143 -0.0164
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000784294688.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:32:34
Heat of formation + Delta-G solvation = -30.619960 kcal
Electronic energy + Delta-G solvation = -29627.844818 eV
Core-core repulsion = 25511.886031 eV
Total energy + Delta-G solvation = -4115.958788 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 342.141 amu
Computer time = 0.76 seconds
Orbital eigenvalues (eV)
-42.55782 -41.69237 -40.81809 -38.97058 -37.53156 -36.89555 -34.57816 -33.88725
-31.80711 -31.37272 -31.10112 -29.68061 -28.64772 -27.12370 -26.20802 -24.28422
-23.37603 -22.87581 -21.42807 -21.42750 -20.46271 -19.69360 -18.82075 -17.91240
-17.83912 -17.69762 -17.29248 -16.92134 -16.58246 -16.38039 -15.95552 -15.75518
-15.28346 -14.80960 -14.71815 -14.48483 -14.42661 -14.24152 -14.05877 -13.94689
-13.84116 -13.59911 -13.45182 -13.25435 -13.08308 -12.86946 -12.82304 -12.76953
-12.65919 -12.48300 -12.18254 -11.91702 -11.77240 -11.62364 -11.21275 -10.64123
-10.06706 -9.53951 -9.52867 -9.29102 -8.77325 -8.24723 -6.45815 0.14839
0.62376 0.82046 1.22877 1.40076 1.43235 1.52032 1.70150 1.82720
1.87039 2.03580 2.21696 2.74454 2.86802 3.34740 3.61694 3.77549
3.93161 4.04058 4.13808 4.18653 4.28961 4.32400 4.35733 4.37019
4.40599 4.59059 4.83026 4.85607 4.86756 4.92216 4.97156 5.00039
5.10290 5.11880 5.15603 5.28402 5.40621 5.48867 5.74078 5.75662
5.82986 5.87137 5.93086 5.97748 6.18104 6.29863 6.55946 6.62008
6.88402 7.26813 7.61818 8.57295
Molecular weight = 342.14amu
Principal moments of inertia in cm(-1)
A = 0.013190 B = 0.003360 C = 0.002741
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2122.371477 B = 8330.473671 C =10214.248989
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.091 4.091
2 C -0.073 4.073
3 C -0.223 4.223
4 C 0.053 3.947
5 N -0.420 5.420
6 C 0.064 3.936
7 C -0.095 4.095
8 C 0.528 3.472
9 O -0.525 6.525
10 O -0.344 6.344
11 C 0.083 3.917
12 C 0.480 3.520
13 O -0.565 6.565
14 N -0.387 5.387
15 C -0.395 4.395
16 H 0.104 0.896
17 C 0.024 3.976
18 N -0.870 5.870
19 Si 0.982 3.018
20 H -0.263 1.263
21 H -0.279 1.279
22 H -0.259 1.259
23 C 0.158 3.842
24 C -0.113 4.113
25 C -0.124 4.124
26 C -0.162 4.162
27 C -0.120 4.120
28 C -0.210 4.210
29 H 0.072 0.928
30 H 0.090 0.910
31 H 0.054 0.946
32 H 0.176 0.824
33 H 0.216 0.784
34 H 0.078 0.922
35 H 0.122 0.878
36 H 0.078 0.922
37 H 0.097 0.903
38 H 0.103 0.897
39 H 0.277 0.723
40 H 0.110 0.890
41 H 0.133 0.867
42 H 0.142 0.858
43 H 0.136 0.864
44 H 0.160 0.840
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.172 13.139 3.593 13.794
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.148 4.148
2 C -0.082 4.082
3 C -0.246 4.246
4 C -0.085 4.085
5 N -0.094 5.094
6 C -0.077 4.077
7 C -0.204 4.204
8 C 0.376 3.624
9 O -0.416 6.416
10 O -0.260 6.260
11 C 0.007 3.993
12 C 0.271 3.729
13 O -0.450 6.450
14 N -0.096 5.096
15 C -0.521 4.521
16 H 0.122 0.878
17 C -0.184 4.184
18 N -0.502 5.502
19 Si 0.804 3.196
20 H -0.188 1.188
21 H -0.204 1.204
22 H -0.183 1.183
23 C 0.062 3.938
24 C -0.134 4.134
25 C -0.143 4.143
26 C -0.181 4.181
27 C -0.139 4.139
28 C -0.230 4.230
29 H 0.091 0.909
30 H 0.109 0.891
31 H 0.073 0.927
32 H 0.193 0.807
33 H 0.233 0.767
34 H 0.096 0.904
35 H 0.141 0.859
36 H 0.096 0.904
37 H 0.115 0.885
38 H 0.120 0.880
39 H 0.087 0.913
40 H 0.128 0.872
41 H 0.151 0.849
42 H 0.160 0.840
43 H 0.154 0.846
44 H 0.176 0.824
Dipole moment (debyes) X Y Z Total
from point charges 2.677 12.801 3.489 13.535
hybrid contribution -1.036 -1.054 -0.491 1.557
sum 1.641 11.747 2.998 12.234
Atomic orbital electron populations
1.20388 0.88689 1.03056 1.02624 1.20364 0.96520 0.90924 1.00390
1.21135 0.91354 0.99221 1.12883 1.22763 1.01140 0.81908 1.02650
1.44140 1.05296 1.07576 1.52407 1.22418 0.85186 0.95547 1.04529
1.19226 0.85897 0.89138 1.26105 1.20322 0.83924 0.85279 0.72843
1.90832 1.18094 1.84193 1.48486 1.86600 1.39379 1.15658 1.84379
1.22349 0.94692 0.77200 1.05069 1.20542 0.89391 0.83529 0.79395
1.90197 1.23241 1.77977 1.53565 1.41069 1.07421 1.02644 1.58501
1.19749 0.84086 1.28282 1.20014 0.87827 1.26296 1.02011 0.96529
0.93563 1.70092 1.34511 1.32658 1.12930 0.85161 0.77407 0.78453
0.78608 1.18764 1.20383 1.18333 1.18404 0.87557 0.90540 0.97320
1.20826 0.99486 0.91635 1.01490 1.21113 0.92689 0.99348 1.01152
1.21220 0.96747 0.95613 1.04533 1.21221 0.98637 0.93449 1.00543
1.22679 0.91440 1.03771 1.05097 0.90893 0.89130 0.92659 0.80669
0.76743 0.90353 0.85934 0.90372 0.88453 0.87959 0.91338 0.87195
0.84916 0.84007 0.84576 0.82395
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.09 -2.17 9.83 71.24 0.70 -1.47 16
2 C -0.07 -1.93 6.22 -19.55 -0.12 -2.05 16
3 C -0.22 -4.25 10.76 22.01 0.24 -4.02 16
4 C 0.05 0.92 11.35 83.57 0.95 1.87 16
5 N -0.42 -10.43 3.15 -534.85 -1.68 -12.11 16
6 C 0.06 1.44 10.55 127.77 1.35 2.79 16
7 C -0.10 -2.98 6.88 40.32 0.28 -2.70 16
8 C 0.53 19.83 7.92 69.97 0.55 20.38 16
9 O -0.53 -21.31 14.61 19.42 0.28 -21.02 16
10 O -0.34 -13.67 7.20 -51.73 -0.37 -14.04 16
11 C 0.08 3.52 4.73 71.24 0.34 3.86 16
12 C 0.48 23.26 7.65 87.66 0.67 23.93 16
13 O -0.57 -28.18 12.92 15.71 0.20 -27.98 16
14 N -0.39 -19.76 2.70 -458.89 -1.24 -21.01 16
15 C -0.40 -19.58 7.65 84.02 0.64 -18.93 16
16 H 0.10 4.82 7.55 -2.91 -0.02 4.80 16
17 C 0.02 1.14 3.62 84.91 0.31 1.45 16
18 N -0.87 -45.48 11.12 21.65 0.24 -45.24 16
19 Si 0.98 38.28 29.56 68.60 2.03 40.31 16
20 H -0.26 -10.05 7.11 99.48 0.71 -9.34 16
21 H -0.28 -10.77 7.11 99.48 0.71 -10.06 16
22 H -0.26 -9.70 7.11 99.48 0.71 -8.99 16
23 C 0.16 8.00 5.72 38.22 0.22 8.22 16
24 C -0.11 -5.39 7.56 22.41 0.17 -5.22 16
25 C -0.12 -4.97 10.04 22.25 0.22 -4.75 16
26 C -0.16 -5.92 10.04 22.30 0.22 -5.70 16
27 C -0.12 -4.74 10.04 22.25 0.22 -4.52 16
28 C -0.21 -9.99 9.04 22.41 0.20 -9.78 16
29 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16
30 H 0.09 1.62 8.14 -2.38 -0.02 1.60 16
31 H 0.05 1.60 6.50 -2.38 -0.02 1.59 16
32 H 0.18 2.18 8.06 -2.91 -0.02 2.15 16
33 H 0.22 1.65 8.06 -2.91 -0.02 1.62 16
34 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16
35 H 0.12 1.77 8.14 -2.39 -0.02 1.75 16
36 H 0.08 2.34 6.16 -2.39 -0.01 2.32 16
37 H 0.10 4.23 7.88 -2.39 -0.02 4.21 16
38 H 0.10 4.06 8.08 -2.39 -0.02 4.04 16
39 H 0.28 13.74 8.32 -92.71 -0.77 12.97 16
40 H 0.11 5.44 5.69 -2.91 -0.02 5.43 16
41 H 0.13 4.44 8.06 -2.91 -0.02 4.42 16
42 H 0.14 4.01 8.06 -2.91 -0.02 3.98 16
43 H 0.14 4.42 8.06 -2.91 -0.02 4.39 16
44 H 0.16 7.87 4.56 -60.07 -0.27 7.60 16
Total: -1.00 -67.25 369.77 7.40 -59.85
By element:
Atomic # 1 Polarization: 37.09 SS G_CDS: 0.77 Total: 37.86 kcal
Atomic # 6 Polarization: -3.79 SS G_CDS: 7.16 Total: 3.37 kcal
Atomic # 7 Polarization: -75.68 SS G_CDS: -2.68 Total: -78.36 kcal
Atomic # 8 Polarization: -63.15 SS G_CDS: 0.11 Total: -63.04 kcal
Atomic # 14 Polarization: 38.28 SS G_CDS: 2.03 Total: 40.31 kcal
Total: -67.25 7.40 -59.85 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000784294688.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 29.234 kcal
(2) G-P(sol) polarization free energy of solvation -67.250 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.016 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.396 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.854 kcal
(6) G-S(sol) free energy of system = (1) + (5) -30.620 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.76 seconds