Wall clock time and date at job start Sat Apr 11 2020 06:33:52
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53007 * 1
3 3 C 1.52993 * 109.47043 * 2 1
4 4 C 1.52999 * 109.46974 * 119.99920 * 2 1 3
5 5 H 1.09001 * 109.47496 * 300.00171 * 4 2 1
6 6 C 1.53006 * 109.47149 * 59.99989 * 4 2 1
7 7 O 1.42900 * 109.47149 * 54.99993 * 6 4 2
8 8 O 1.42900 * 109.47212 * 179.97438 * 4 2 1
9 9 N 1.41605 * 114.00011 * 155.00041 * 8 4 2
10 10 C 1.34773 * 119.99772 * 180.02562 * 9 8 4
11 11 O 1.21589 * 120.00057 * 0.02562 * 10 9 8
12 12 N 1.34784 * 119.99775 * 179.97438 * 10 9 8
13 13 C 1.40135 * 119.99664 * 185.65910 * 12 10 9
14 14 C 1.38693 * 120.07546 * 34.00107 * 13 12 10
15 15 C 1.38200 * 120.02177 * 179.97438 * 14 13 12
16 16 C 1.38549 * 120.17167 * 359.97438 * 15 14 13
17 17 F 1.35100 * 119.92325 * 180.02562 * 16 15 14
18 18 C 1.38346 * 120.15396 * 0.04633 * 16 15 14
19 19 C 1.38738 * 119.97554 * 359.92684 * 18 16 15
20 20 O 1.35779 * 120.08566 * 180.31900 * 19 18 16
21 21 C 1.34807 * 117.00182 * 354.13304 * 20 19 18
22 22 H 1.07999 * 119.99676 * 354.47718 * 21 20 19
23 23 C 1.38630 * 120.00023 * 174.47641 * 21 20 19
24 24 N 1.31574 * 119.99975 * 359.97438 * 23 21 20
25 25 Si 1.86800 * 120.00138 * 180.02562 * 23 21 20
26 26 H 1.48502 * 109.46864 * 59.99843 * 25 23 21
27 27 H 1.48500 * 109.47313 * 179.97438 * 25 23 21
28 28 H 1.48505 * 109.47176 * 300.00177 * 25 23 21
29 29 H 1.08996 * 109.46739 * 299.99881 * 1 2 3
30 30 H 1.08998 * 109.46680 * 60.00545 * 1 2 3
31 31 H 1.09003 * 109.47028 * 179.97438 * 1 2 3
32 32 H 1.08997 * 109.46988 * 239.99380 * 2 1 3
33 33 H 1.09008 * 109.47272 * 60.00013 * 3 2 1
34 34 H 1.09006 * 109.47346 * 179.97438 * 3 2 1
35 35 H 1.09001 * 109.47132 * 300.00047 * 3 2 1
36 36 H 1.09006 * 109.46810 * 174.99906 * 6 4 2
37 37 H 1.08998 * 109.47406 * 294.99996 * 6 4 2
38 38 H 0.96695 * 114.00320 * 179.97438 * 7 6 4
39 39 H 0.96999 * 119.99614 * 359.97438 * 9 8 4
40 40 H 0.96998 * 120.00068 * 5.66725 * 12 10 9
41 41 H 1.07994 * 119.99108 * 359.97268 * 14 13 12
42 42 H 1.07993 * 119.91546 * 180.02562 * 15 14 13
43 43 H 1.07993 * 120.01474 * 180.02562 * 18 16 15
44 44 H 0.97004 * 120.00199 * 179.97438 * 24 23 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 6 2.0400 1.4424 0.0000
4 6 2.0400 -0.7212 1.2493
5 1 1.6767 -0.2074 2.1393
6 6 1.5300 -2.1638 1.2493
7 8 1.9080 -2.8027 0.0282
8 8 3.4690 -0.7218 1.2490
9 7 4.0452 -0.8346 2.5376
10 6 5.3855 -0.8468 2.6777
11 8 6.1000 -0.7606 1.6977
12 7 5.9339 -0.9536 3.9043
13 6 7.3222 -0.8473 4.0627
14 6 8.0520 0.0030 3.2455
15 6 9.4210 0.1074 3.4030
16 6 10.0685 -0.6356 4.3768
17 9 11.4069 -0.5293 4.5268
18 6 9.3477 -1.4864 5.1957
19 6 7.9730 -1.5955 5.0434
20 8 7.2626 -2.4250 5.8501
21 6 7.9644 -3.2047 6.6967
22 1 9.0433 -3.2176 6.6501
23 6 7.3013 -3.9900 7.6270
24 7 5.9869 -3.9739 7.6840
25 14 8.2739 -5.0700 8.8005
26 1 9.1737 -4.2220 9.6230
27 1 7.3375 -5.8041 9.6890
28 1 9.0838 -6.0419 8.0228
29 1 -0.3633 0.5138 0.8900
30 1 -0.3632 0.5138 -0.8900
31 1 -0.3633 -1.0277 -0.0005
32 1 1.8934 -0.5139 -0.8899
33 1 1.6767 1.9563 0.8900
34 1 3.1301 1.4425 0.0005
35 1 1.6767 1.9563 -0.8900
36 1 1.9647 -2.7028 2.0911
37 1 0.4437 -2.1651 1.3388
38 1 1.6175 -3.7224 -0.0408
39 1 3.4751 -0.9022 3.3195
40 1 5.3677 -1.1042 4.6773
41 1 7.5503 0.5838 2.4857
42 1 9.9875 0.7704 2.7660
43 1 9.8546 -2.0641 5.9543
44 1 5.5228 -4.5236 8.3347
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000836456657.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:33:52
Heat of formation + Delta-G solvation = -140.055750 kcal
Electronic energy + Delta-G solvation = -29869.993461 eV
Core-core repulsion = 25318.519957 eV
Total energy + Delta-G solvation = -4551.473504 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 342.147 amu
Computer time = 0.73 seconds
Orbital eigenvalues (eV)
-49.81297 -41.70693 -40.47717 -39.71429 -38.07989 -37.17689 -35.94034 -35.62336
-34.29836 -32.96086 -31.05849 -29.92187 -29.38171 -27.80175 -27.36762 -24.48593
-24.03209 -23.38117 -22.27586 -21.16647 -20.14537 -19.77559 -19.62479 -18.99006
-18.27095 -17.70512 -17.27112 -16.98858 -16.77496 -16.58503 -16.40904 -16.02455
-15.91374 -15.68789 -15.45901 -15.24699 -15.06435 -14.86706 -14.47500 -14.17447
-13.96884 -13.77843 -13.59730 -13.40268 -13.21263 -13.07264 -12.98830 -12.68449
-12.54550 -12.34308 -12.16151 -12.05924 -11.68983 -11.66531 -11.47060 -11.40052
-11.12192 -10.95749 -10.80569 -10.00316 -9.54991 -8.75336 -8.50199 -6.15407
0.17465 0.47033 0.52437 1.38571 1.46633 1.51657 1.96933 2.15067
2.61545 2.69809 3.06734 3.17344 3.28176 3.45891 3.46887 3.61722
3.78873 3.94470 4.09052 4.17649 4.29498 4.35869 4.39091 4.45226
4.50508 4.55658 4.76156 4.79015 4.93048 4.97046 4.99842 5.01041
5.21276 5.21847 5.25113 5.34253 5.36638 5.41301 5.52224 5.58971
5.92678 5.94982 6.07092 6.80834 6.84394 6.94780 7.44105 7.63344
8.70164
Molecular weight = 342.15amu
Principal moments of inertia in cm(-1)
A = 0.010786 B = 0.002948 C = 0.002408
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2595.294866 B = 9494.341829 C =11624.672331
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.138 4.138
2 C -0.078 4.078
3 C -0.148 4.148
4 C 0.054 3.946
5 H 0.114 0.886
6 C 0.049 3.951
7 O -0.583 6.583
8 O -0.132 6.132
9 N -0.600 5.600
10 C 0.721 3.279
11 O -0.603 6.603
12 N -0.654 5.654
13 C 0.083 3.917
14 C -0.050 4.050
15 C -0.202 4.202
16 C 0.124 3.876
17 F -0.144 7.144
18 C -0.261 4.261
19 C 0.134 3.866
20 O -0.201 6.201
21 C -0.416 4.416
22 H 0.099 0.901
23 C -0.007 4.007
24 N -0.904 5.904
25 Si 1.009 2.991
26 H -0.259 1.259
27 H -0.270 1.270
28 H -0.264 1.264
29 H 0.070 0.930
30 H 0.071 0.929
31 H 0.064 0.936
32 H 0.067 0.933
33 H 0.065 0.935
34 H 0.037 0.963
35 H 0.069 0.931
36 H 0.043 0.957
37 H 0.091 0.909
38 H 0.394 0.606
39 H 0.419 0.581
40 H 0.418 0.582
41 H 0.146 0.854
42 H 0.158 0.842
43 H 0.138 0.862
44 H 0.275 0.725
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -12.446 6.891 -8.633 16.641
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.195 4.195
2 C -0.098 4.098
3 C -0.205 4.205
4 C -0.004 4.004
5 H 0.132 0.868
6 C -0.029 4.029
7 O -0.391 6.391
8 O -0.135 6.135
9 N -0.305 5.305
10 C 0.422 3.578
11 O -0.482 6.482
12 N -0.305 5.305
13 C -0.012 4.012
14 C -0.071 4.071
15 C -0.221 4.221
16 C 0.104 3.896
17 F -0.122 7.122
18 C -0.282 4.282
19 C 0.080 3.920
20 O -0.106 6.106
21 C -0.491 4.491
22 H 0.116 0.884
23 C -0.207 4.207
24 N -0.540 5.540
25 Si 0.829 3.171
26 H -0.184 1.184
27 H -0.194 1.194
28 H -0.188 1.188
29 H 0.089 0.911
30 H 0.090 0.910
31 H 0.083 0.917
32 H 0.085 0.915
33 H 0.084 0.916
34 H 0.056 0.944
35 H 0.088 0.912
36 H 0.061 0.939
37 H 0.108 0.892
38 H 0.243 0.757
39 H 0.262 0.738
40 H 0.254 0.746
41 H 0.164 0.836
42 H 0.176 0.824
43 H 0.156 0.844
44 H 0.084 0.916
Dipole moment (debyes) X Y Z Total
from point charges -11.915 7.437 -9.692 17.065
hybrid contribution -0.221 -1.427 1.517 2.095
sum -12.136 6.010 -8.175 15.819
Atomic orbital electron populations
1.21830 0.91440 1.02855 1.03404 1.21024 0.97388 0.95605 0.95756
1.21827 1.00522 0.95290 1.02849 1.23282 0.79290 0.95807 1.02037
0.86811 1.22885 1.00194 0.92971 0.86882 1.86509 1.82268 1.31471
1.38871 1.90695 1.21413 1.96300 1.05140 1.45863 1.03381 1.80892
1.00361 1.15297 0.80997 0.78208 0.83292 1.90892 1.60795 1.58198
1.38290 1.41880 1.05568 1.75347 1.07731 1.16767 0.82542 1.01572
1.00282 1.20701 0.93231 0.95555 0.97626 1.20834 0.94430 1.05220
1.01658 1.17433 0.76711 0.98195 0.97233 1.91431 1.30498 1.95099
1.95215 1.20931 0.93869 1.07173 1.06250 1.19084 0.90234 0.90241
0.92394 1.83902 1.34576 1.46376 1.45725 1.21688 0.92364 1.21096
1.13986 0.88414 1.26334 0.97112 0.98726 0.98518 1.70100 1.08328
1.39755 1.35840 0.84766 0.77533 0.77620 0.77151 1.18367 1.19439
1.18815 0.91057 0.91041 0.91688 0.91455 0.91560 0.94391 0.91190
0.93852 0.89158 0.75673 0.73760 0.74552 0.83638 0.82429 0.84396
0.91615
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.50 8.84 71.98 0.64 -0.86 16
2 C -0.08 -1.36 2.52 -10.79 -0.03 -1.38 16
3 C -0.15 -2.59 9.05 71.98 0.65 -1.93 16
4 C 0.05 1.03 2.22 30.60 0.07 1.10 16
5 H 0.11 1.55 7.94 -2.39 -0.02 1.53 16
6 C 0.05 0.83 6.41 71.98 0.46 1.29 16
7 O -0.58 -12.17 12.74 -144.30 -1.84 -14.00 16
8 O -0.13 -3.90 10.04 -16.47 -0.17 -4.06 16
9 N -0.60 -17.22 6.38 -184.74 -1.18 -18.40 16
10 C 0.72 26.80 8.44 179.05 1.51 28.31 16
11 O -0.60 -27.01 14.50 13.36 0.19 -26.81 16
12 N -0.65 -24.39 5.21 -316.69 -1.65 -26.04 16
13 C 0.08 3.49 6.29 38.22 0.24 3.73 16
14 C -0.05 -1.91 8.65 22.37 0.19 -1.72 16
15 C -0.20 -7.09 10.02 22.33 0.22 -6.87 16
16 C 0.12 4.80 7.29 22.37 0.16 4.96 16
17 F -0.14 -5.23 17.26 44.97 0.78 -4.46 16
18 C -0.26 -11.41 9.11 22.42 0.20 -11.20 16
19 C 0.13 6.27 6.66 22.68 0.15 6.42 16
20 O -0.20 -10.70 9.30 -22.83 -0.21 -10.91 16
21 C -0.42 -22.31 9.44 67.91 0.64 -21.66 16
22 H 0.10 4.94 5.30 -2.91 -0.02 4.92 16
23 C -0.01 -0.37 5.49 84.83 0.47 0.10 16
24 N -0.90 -49.73 13.67 21.61 0.30 -49.43 16
25 Si 1.01 40.19 29.55 68.60 2.03 42.22 16
26 H -0.26 -9.82 7.11 99.48 0.71 -9.12 16
27 H -0.27 -10.28 7.11 99.48 0.71 -9.58 16
28 H -0.26 -10.16 7.11 99.48 0.71 -9.45 16
29 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16
30 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16
31 H 0.06 0.65 6.55 -2.39 -0.02 0.64 16
32 H 0.07 1.51 7.56 -2.39 -0.02 1.49 16
33 H 0.07 0.97 8.14 -2.38 -0.02 0.95 16
34 H 0.04 0.88 7.68 -2.38 -0.02 0.86 16
35 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16
36 H 0.04 0.81 8.14 -2.38 -0.02 0.79 16
37 H 0.09 0.96 6.71 -2.39 -0.02 0.94 16
38 H 0.39 4.80 9.12 -74.06 -0.68 4.13 16
39 H 0.42 8.83 8.45 -92.71 -0.78 8.05 16
40 H 0.42 14.42 8.57 -92.71 -0.79 13.63 16
41 H 0.15 5.37 6.47 -2.91 -0.02 5.35 16
42 H 0.16 4.49 8.06 -2.91 -0.02 4.46 16
43 H 0.14 6.07 5.71 -2.91 -0.02 6.05 16
44 H 0.27 13.95 8.31 -92.70 -0.77 13.18 16
Total: -1.00 -73.23 377.55 2.67 -70.56
By element:
Atomic # 1 Polarization: 42.22 SS G_CDS: -1.16 Total: 41.06 kcal
Atomic # 6 Polarization: -5.31 SS G_CDS: 5.58 Total: 0.28 kcal
Atomic # 7 Polarization: -91.33 SS G_CDS: -2.53 Total: -93.86 kcal
Atomic # 8 Polarization: -53.77 SS G_CDS: -2.02 Total: -55.79 kcal
Atomic # 9 Polarization: -5.23 SS G_CDS: 0.78 Total: -4.46 kcal
Atomic # 14 Polarization: 40.19 SS G_CDS: 2.03 Total: 42.22 kcal
Total: -73.23 2.67 -70.56 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000836456657.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -69.500 kcal
(2) G-P(sol) polarization free energy of solvation -73.227 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.727 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.671 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.556 kcal
(6) G-S(sol) free energy of system = (1) + (5) -140.056 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.73 seconds