Wall clock time and date at job start Sat Apr 11 2020 06:32:13
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50703 * 1
3 3 C 1.47099 * 120.00014 * 2 1
4 4 O 1.21615 * 120.00252 * 179.97438 * 3 2 1
5 5 N 1.34779 * 120.00126 * 359.97438 * 3 2 1
6 6 C 1.46494 * 120.00316 * 179.97438 * 5 3 2
7 7 C 1.53001 * 109.47280 * 179.97438 * 6 5 3
8 8 H 1.09004 * 109.46851 * 65.00686 * 7 6 5
9 9 C 1.53007 * 109.47242 * 185.00165 * 7 6 5
10 10 O 1.42894 * 109.46990 * 54.99880 * 9 7 6
11 11 N 1.46493 * 109.47469 * 305.00238 * 7 6 5
12 12 C 1.34780 * 120.00219 * 154.99635 * 11 7 6
13 13 O 1.21278 * 119.99836 * 0.02562 * 12 11 7
14 14 C 1.50699 * 120.00044 * 180.02562 * 12 11 7
15 15 S 1.80994 * 109.47134 * 180.02562 * 14 12 11
16 16 C 1.76202 * 100.00086 * 179.97438 * 15 14 12
17 17 H 1.07999 * 120.00126 * 0.02562 * 16 15 14
18 18 C 1.38802 * 119.99986 * 180.02562 * 16 15 14
19 19 N 1.31631 * 120.00092 * 0.02562 * 18 16 15
20 20 Si 1.86795 * 119.99755 * 180.02562 * 18 16 15
21 21 H 1.48497 * 109.47734 * 59.99933 * 20 18 16
22 22 H 1.48496 * 109.46948 * 180.02562 * 20 18 16
23 23 H 1.48510 * 109.47197 * 299.99635 * 20 18 16
24 24 C 1.32988 * 120.00081 * 179.97438 * 2 1 3
25 25 C 1.51401 * 136.31770 * 179.62814 * 24 2 1
26 26 C 1.53381 * 87.52293 * 206.06142 * 25 24 2
27 27 C 1.51405 * 136.31632 * 0.02562 * 24 2 1
28 28 H 1.09002 * 109.47152 * 89.99987 * 1 2 3
29 29 H 1.09001 * 109.46980 * 330.00087 * 1 2 3
30 30 H 1.09004 * 109.47113 * 210.00068 * 1 2 3
31 31 H 0.97001 * 119.99591 * 0.02562 * 5 3 2
32 32 H 1.08999 * 109.47479 * 299.99995 * 6 5 3
33 33 H 1.09004 * 109.47042 * 60.00283 * 6 5 3
34 34 H 1.08995 * 109.46824 * 175.00402 * 9 7 6
35 35 H 1.08998 * 109.46774 * 295.00348 * 9 7 6
36 36 H 0.96703 * 114.00216 * 179.97438 * 10 9 7
37 37 H 0.97001 * 119.99762 * 335.00495 * 11 7 6
38 38 H 1.09000 * 109.47236 * 300.00512 * 14 12 11
39 39 H 1.08998 * 109.47038 * 59.99827 * 14 12 11
40 40 H 0.96998 * 119.99873 * 179.97438 * 19 18 16
41 41 H 1.09005 * 113.56259 * 320.64361 * 25 24 2
42 42 H 1.09003 * 113.55981 * 91.37508 * 25 24 2
43 43 H 1.09003 * 113.96779 * 220.29461 * 26 25 24
44 44 H 1.08996 * 113.60025 * 88.79390 * 26 25 24
45 45 H 1.09004 * 113.56443 * 268.62354 * 27 24 2
46 46 H 1.09002 * 113.56124 * 39.36103 * 27 24 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.2425 1.2739 0.0000
4 8 3.4587 1.2740 0.0005
5 7 1.5687 2.4411 -0.0005
6 6 2.3011 3.7098 0.0000
7 6 1.3068 4.8728 -0.0014
8 1 0.7396 4.8669 0.9295
9 6 2.0678 6.1943 -0.1265
10 8 2.9014 6.1559 -1.2866
11 7 0.3886 4.7289 -1.1337
12 6 -0.8359 5.2897 -1.0839
13 8 -1.1775 5.9139 -0.1017
14 6 -1.7807 5.1412 -2.2485
15 16 -3.3312 5.9994 -1.8808
16 6 -4.2214 5.6729 -3.3660
17 1 -3.7640 5.0916 -4.1530
18 6 -5.5104 6.1628 -3.5245
19 7 -6.0676 6.8717 -2.5656
20 14 -6.4542 5.8160 -5.0987
21 1 -6.6040 4.3489 -5.2732
22 1 -7.7969 6.4452 -5.0196
23 1 -5.7118 6.3788 -6.2552
24 6 2.1720 -1.1517 0.0005
25 6 3.6250 -1.5771 -0.0061
26 6 3.1709 -2.8821 -0.6720
27 6 1.8138 -2.6228 0.0007
28 1 -0.3633 0.0000 -1.0277
29 1 -0.3633 0.8900 0.5138
30 1 -0.3633 -0.8900 0.5139
31 1 0.5986 2.4411 -0.0005
32 1 2.9271 3.7677 0.8905
33 1 2.9284 3.7676 -0.8895
34 1 1.3570 7.0156 -0.2168
35 1 2.6849 6.3435 0.7595
36 1 3.4144 6.9631 -1.4292
37 1 0.6619 4.2299 -1.9194
38 1 -1.3286 5.5747 -3.1406
39 1 -1.9821 4.0839 -2.4205
40 1 -6.9683 7.2143 -2.6765
41 1 4.2567 -0.9604 -0.6455
42 1 4.0420 -1.7188 0.9910
43 1 3.6836 -3.7699 -0.3017
44 1 3.1399 -2.8289 -1.7602
45 1 1.7337 -3.0516 0.9996
46 1 0.9604 -2.8635 -0.6332
RHF calculation, no. of doubly occupied orbitals= 62
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001738880644.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:32:13
Heat of formation + Delta-G solvation = -90.926366 kcal
Electronic energy + Delta-G solvation = -27077.722803 eV
Core-core repulsion = 23094.592884 eV
Total energy + Delta-G solvation = -3983.129918 eV
No. of doubly occupied orbitals = 62
Molecular weight
(most abundant/longest-lived isotopes) = 342.145 amu
Computer time = 0.52 seconds
Orbital eigenvalues (eV)
-40.35944 -39.55250 -38.52558 -37.25326 -35.45145 -33.93740 -33.03055 -32.45437
-30.76386 -28.41174 -26.88086 -26.24813 -25.75067 -25.50436 -23.12823 -21.74483
-20.71338 -20.36118 -18.67683 -17.89695 -17.63350 -16.85369 -16.57474 -16.31054
-15.93918 -15.75095 -15.18471 -15.15258 -14.82819 -14.59733 -14.28431 -14.01437
-13.82199 -13.74170 -13.37207 -13.14621 -12.89873 -12.76281 -12.68495 -12.46470
-12.34519 -12.23638 -11.89015 -11.78175 -11.49528 -11.28720 -11.07293 -11.05887
-10.79412 -10.78218 -10.23854 -9.85598 -9.85309 -9.49518 -9.32120 -9.09659
-9.02837 -9.01137 -8.28154 -6.53449 -6.24371 -3.95206 1.11184 2.86059
2.95832 3.04803 3.10243 3.21708 3.25745 3.28820 3.64741 4.06380
4.09205 4.18051 4.19494 4.40696 4.44036 4.68198 4.77715 4.91875
5.00499 5.06653 5.10931 5.13672 5.22367 5.25330 5.31464 5.37508
5.41007 5.46291 5.50709 5.54683 5.58698 5.63446 5.76041 5.84307
5.86125 5.91282 6.01993 6.11004 6.21223 6.40477 6.51959 7.33292
7.43410 7.56841 7.63056 8.07107 8.32464 8.51167 9.21080 10.82948
Molecular weight = 342.14amu
Principal moments of inertia in cm(-1)
A = 0.010426 B = 0.002508 C = 0.002120
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2684.940701 B =11159.996382 C =13203.421943
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.112 4.112
2 C -0.166 4.166
3 C 0.558 3.442
4 O -0.542 6.542
5 N -0.727 5.727
6 C 0.117 3.883
7 C 0.139 3.861
8 H 0.106 0.894
9 C 0.066 3.934
10 O -0.569 6.569
11 N -0.729 5.729
12 C 0.534 3.466
13 O -0.518 6.518
14 C -0.154 4.154
15 S -0.059 6.059
16 C -0.536 4.536
17 H 0.072 0.928
18 C 0.074 3.926
19 N -0.868 5.868
20 Si 0.919 3.081
21 H -0.274 1.274
22 H -0.283 1.283
23 H -0.274 1.274
24 C -0.070 4.070
25 C -0.102 4.102
26 C -0.142 4.142
27 C -0.106 4.106
28 H 0.073 0.927
29 H 0.067 0.933
30 H 0.070 0.930
31 H 0.404 0.596
32 H 0.079 0.921
33 H 0.086 0.914
34 H 0.062 0.938
35 H 0.055 0.945
36 H 0.380 0.620
37 H 0.402 0.598
38 H 0.090 0.910
39 H 0.090 0.910
40 H 0.269 0.731
41 H 0.085 0.915
42 H 0.096 0.904
43 H 0.077 0.923
44 H 0.084 0.916
45 H 0.099 0.901
46 H 0.078 0.922
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 19.237 -14.411 5.534 24.665
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.169 4.169
2 C -0.169 4.169
3 C 0.347 3.653
4 O -0.421 6.421
5 N -0.380 5.380
6 C -0.007 4.007
7 C 0.033 3.967
8 H 0.124 0.876
9 C -0.014 4.014
10 O -0.374 6.374
11 N -0.384 5.384
12 C 0.320 3.680
13 O -0.393 6.393
14 C -0.304 4.304
15 S 0.168 5.832
16 C -0.684 4.684
17 H 0.090 0.910
18 C -0.135 4.135
19 N -0.503 5.503
20 Si 0.745 3.255
21 H -0.199 1.199
22 H -0.208 1.208
23 H -0.199 1.199
24 C -0.072 4.072
25 C -0.139 4.139
26 C -0.180 4.180
27 C -0.143 4.143
28 H 0.092 0.908
29 H 0.086 0.914
30 H 0.089 0.911
31 H 0.240 0.760
32 H 0.097 0.903
33 H 0.104 0.896
34 H 0.080 0.920
35 H 0.073 0.927
36 H 0.227 0.773
37 H 0.237 0.763
38 H 0.108 0.892
39 H 0.108 0.892
40 H 0.079 0.921
41 H 0.103 0.897
42 H 0.114 0.886
43 H 0.095 0.905
44 H 0.103 0.897
45 H 0.118 0.882
46 H 0.096 0.904
Dipole moment (debyes) X Y Z Total
from point charges 19.099 -13.835 7.196 24.657
hybrid contribution -0.399 -0.424 -2.460 2.528
sum 18.700 -14.259 4.737 23.988
Atomic orbital electron populations
1.20703 0.90209 1.03103 1.02835 1.20449 0.95969 0.91170 1.09337
1.18227 0.87120 0.83767 0.76160 1.90768 1.13489 1.87770 1.50092
1.45943 1.10841 1.05465 1.75718 1.21559 0.94129 0.81071 1.03922
1.21246 0.90146 0.93253 0.92048 0.87594 1.22553 0.93176 0.97689
0.87966 1.86445 1.61164 1.43218 1.46603 1.46033 1.14809 1.57471
1.20060 1.20368 0.81177 0.77837 0.88598 1.90703 1.75704 1.39510
1.33358 1.23533 1.02167 1.05868 0.98869 1.85363 1.04224 1.68285
1.25361 1.22824 1.02371 1.40009 1.03228 0.90975 1.24989 0.96539
0.94524 0.97497 1.70003 1.15060 1.33067 1.32175 0.86227 0.78619
0.78679 0.82001 1.19920 1.20811 1.19939 1.23235 0.98074 0.93727
0.92122 1.22175 0.93999 0.95922 1.01810 1.22718 0.96643 0.98146
1.00449 1.22300 0.98626 0.91575 1.01807 0.90806 0.91438 0.91069
0.75954 0.90262 0.89595 0.92007 0.92659 0.77305 0.76332 0.89155
0.89211 0.92116 0.89660 0.88610 0.90459 0.89746 0.88235 0.90373
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.11 -0.91 9.57 36.01 0.34 -0.57 16
2 C -0.17 -1.69 6.00 -102.85 -0.62 -2.31 16
3 C 0.56 6.76 7.75 -12.66 -0.10 6.66 16
4 O -0.54 -8.10 15.15 5.26 0.08 -8.02 16
5 N -0.73 -7.58 5.33 -61.49 -0.33 -7.91 16
6 C 0.12 1.21 5.12 -4.04 -0.02 1.19 16
7 C 0.14 1.53 2.53 -67.93 -0.17 1.36 16
8 H 0.11 1.24 7.58 -51.93 -0.39 0.85 16
9 C 0.07 0.67 6.85 37.16 0.25 0.92 16
10 O -0.57 -5.60 12.64 -35.23 -0.45 -6.04 16
11 N -0.73 -9.17 4.47 -53.80 -0.24 -9.41 16
12 C 0.53 9.23 7.81 -10.98 -0.09 9.14 16
13 O -0.52 -10.82 15.52 5.56 0.09 -10.74 16
14 C -0.15 -2.97 6.16 36.01 0.22 -2.75 16
15 S -0.06 -1.55 20.57 -107.50 -2.21 -3.76 16
16 C -0.54 -14.99 9.50 30.94 0.29 -14.70 16
17 H 0.07 1.91 7.80 -52.49 -0.41 1.50 16
18 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16
19 N -0.87 -25.79 13.22 55.49 0.73 -25.06 16
20 Si 0.92 21.14 29.55 -169.99 -5.02 16.12 16
21 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16
22 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16
23 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16
24 C -0.07 -0.66 6.60 -100.49 -0.66 -1.32 16
25 C -0.10 -0.90 6.99 -27.56 -0.19 -1.10 16
26 C -0.14 -0.94 8.17 -26.20 -0.21 -1.15 16
27 C -0.11 -0.71 7.71 -27.41 -0.21 -0.92 16
28 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16
29 H 0.07 0.53 6.70 -51.93 -0.35 0.19 16
30 H 0.07 0.51 7.91 -51.93 -0.41 0.10 16
31 H 0.40 3.90 6.24 -40.82 -0.25 3.65 16
32 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16
33 H 0.09 0.99 7.39 -51.93 -0.38 0.61 16
34 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16
35 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16
36 H 0.38 2.24 9.12 45.56 0.42 2.66 16
37 H 0.40 4.50 8.60 -40.82 -0.35 4.15 16
38 H 0.09 1.66 8.14 -51.92 -0.42 1.24 16
39 H 0.09 1.58 8.14 -51.92 -0.42 1.16 16
40 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16
41 H 0.08 0.90 7.49 -51.93 -0.39 0.51 16
42 H 0.10 0.78 8.14 -51.93 -0.42 0.35 16
43 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16
44 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16
45 H 0.10 0.55 8.14 -51.93 -0.42 0.12 16
46 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16
LS Contribution 400.73 15.07 6.04 6.04
Total: -1.00 -35.73 400.73 -8.88 -44.60
By element:
Atomic # 1 Polarization: 14.05 SS G_CDS: -6.31 Total: 7.74 kcal
Atomic # 6 Polarization: -2.30 SS G_CDS: -1.26 Total: -3.56 kcal
Atomic # 7 Polarization: -42.54 SS G_CDS: 0.17 Total: -42.38 kcal
Atomic # 8 Polarization: -24.52 SS G_CDS: -0.28 Total: -24.80 kcal
Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal
Atomic # 16 Polarization: -1.55 SS G_CDS: -2.21 Total: -3.76 kcal
Total LS contribution 6.04 Total: 6.04 kcal
Total: -35.73 -8.88 -44.60 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001738880644.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -46.326 kcal
(2) G-P(sol) polarization free energy of solvation -35.725 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.051 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.875 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.601 kcal
(6) G-S(sol) free energy of system = (1) + (5) -90.926 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.52 seconds