Wall clock time and date at job start Sat Apr 11 2020 06:32:13
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50703 * 1
3 3 C 1.47099 * 120.00014 * 2 1
4 4 O 1.21615 * 120.00252 * 179.97438 * 3 2 1
5 5 N 1.34779 * 120.00126 * 359.97438 * 3 2 1
6 6 C 1.46494 * 120.00316 * 179.97438 * 5 3 2
7 7 C 1.53001 * 109.47280 * 179.97438 * 6 5 3
8 8 H 1.09004 * 109.46851 * 65.00686 * 7 6 5
9 9 C 1.53007 * 109.47242 * 185.00165 * 7 6 5
10 10 O 1.42894 * 109.46990 * 54.99880 * 9 7 6
11 11 N 1.46493 * 109.47469 * 305.00238 * 7 6 5
12 12 C 1.34780 * 120.00219 * 154.99635 * 11 7 6
13 13 O 1.21278 * 119.99836 * 0.02562 * 12 11 7
14 14 C 1.50699 * 120.00044 * 180.02562 * 12 11 7
15 15 S 1.80994 * 109.47134 * 180.02562 * 14 12 11
16 16 C 1.76202 * 100.00086 * 179.97438 * 15 14 12
17 17 H 1.07999 * 120.00126 * 0.02562 * 16 15 14
18 18 C 1.38802 * 119.99986 * 180.02562 * 16 15 14
19 19 N 1.31631 * 120.00092 * 0.02562 * 18 16 15
20 20 Si 1.86795 * 119.99755 * 180.02562 * 18 16 15
21 21 H 1.48497 * 109.47734 * 59.99933 * 20 18 16
22 22 H 1.48496 * 109.46948 * 180.02562 * 20 18 16
23 23 H 1.48510 * 109.47197 * 299.99635 * 20 18 16
24 24 C 1.32988 * 120.00081 * 179.97438 * 2 1 3
25 25 C 1.51401 * 136.31770 * 179.62814 * 24 2 1
26 26 C 1.53381 * 87.52293 * 206.06142 * 25 24 2
27 27 C 1.51405 * 136.31632 * 0.02562 * 24 2 1
28 28 H 1.09002 * 109.47152 * 89.99987 * 1 2 3
29 29 H 1.09001 * 109.46980 * 330.00087 * 1 2 3
30 30 H 1.09004 * 109.47113 * 210.00068 * 1 2 3
31 31 H 0.97001 * 119.99591 * 0.02562 * 5 3 2
32 32 H 1.08999 * 109.47479 * 299.99995 * 6 5 3
33 33 H 1.09004 * 109.47042 * 60.00283 * 6 5 3
34 34 H 1.08995 * 109.46824 * 175.00402 * 9 7 6
35 35 H 1.08998 * 109.46774 * 295.00348 * 9 7 6
36 36 H 0.96703 * 114.00216 * 179.97438 * 10 9 7
37 37 H 0.97001 * 119.99762 * 335.00495 * 11 7 6
38 38 H 1.09000 * 109.47236 * 300.00512 * 14 12 11
39 39 H 1.08998 * 109.47038 * 59.99827 * 14 12 11
40 40 H 0.96998 * 119.99873 * 179.97438 * 19 18 16
41 41 H 1.09005 * 113.56259 * 320.64361 * 25 24 2
42 42 H 1.09003 * 113.55981 * 91.37508 * 25 24 2
43 43 H 1.09003 * 113.96779 * 220.29461 * 26 25 24
44 44 H 1.08996 * 113.60025 * 88.79390 * 26 25 24
45 45 H 1.09004 * 113.56443 * 268.62354 * 27 24 2
46 46 H 1.09002 * 113.56124 * 39.36103 * 27 24 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.2425 1.2739 0.0000
4 8 3.4587 1.2740 0.0005
5 7 1.5687 2.4411 -0.0005
6 6 2.3011 3.7098 0.0000
7 6 1.3068 4.8728 -0.0014
8 1 0.7396 4.8669 0.9295
9 6 2.0678 6.1943 -0.1265
10 8 2.9014 6.1559 -1.2866
11 7 0.3886 4.7289 -1.1337
12 6 -0.8359 5.2897 -1.0839
13 8 -1.1775 5.9139 -0.1017
14 6 -1.7807 5.1412 -2.2485
15 16 -3.3312 5.9994 -1.8808
16 6 -4.2214 5.6729 -3.3660
17 1 -3.7640 5.0916 -4.1530
18 6 -5.5104 6.1628 -3.5245
19 7 -6.0676 6.8717 -2.5656
20 14 -6.4542 5.8160 -5.0987
21 1 -6.6040 4.3489 -5.2732
22 1 -7.7969 6.4452 -5.0196
23 1 -5.7118 6.3788 -6.2552
24 6 2.1720 -1.1517 0.0005
25 6 3.6250 -1.5771 -0.0061
26 6 3.1709 -2.8821 -0.6720
27 6 1.8138 -2.6228 0.0007
28 1 -0.3633 0.0000 -1.0277
29 1 -0.3633 0.8900 0.5138
30 1 -0.3633 -0.8900 0.5139
31 1 0.5986 2.4411 -0.0005
32 1 2.9271 3.7677 0.8905
33 1 2.9284 3.7676 -0.8895
34 1 1.3570 7.0156 -0.2168
35 1 2.6849 6.3435 0.7595
36 1 3.4144 6.9631 -1.4292
37 1 0.6619 4.2299 -1.9194
38 1 -1.3286 5.5747 -3.1406
39 1 -1.9821 4.0839 -2.4205
40 1 -6.9683 7.2143 -2.6765
41 1 4.2567 -0.9604 -0.6455
42 1 4.0420 -1.7188 0.9910
43 1 3.6836 -3.7699 -0.3017
44 1 3.1399 -2.8289 -1.7602
45 1 1.7337 -3.0516 0.9996
46 1 0.9604 -2.8635 -0.6332
RHF calculation, no. of doubly occupied orbitals= 62
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001738880644.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:32:13
Heat of formation + Delta-G solvation = -118.378299 kcal
Electronic energy + Delta-G solvation = -27078.913208 eV
Core-core repulsion = 23094.592884 eV
Total energy + Delta-G solvation = -3984.320323 eV
No. of doubly occupied orbitals = 62
Molecular weight
(most abundant/longest-lived isotopes) = 342.145 amu
Computer time = 0.60 seconds
Orbital eigenvalues (eV)
-41.31859 -40.67941 -39.30664 -38.23758 -36.39841 -34.93132 -34.57227 -33.89398
-31.94975 -29.74805 -27.63971 -27.53466 -27.05671 -26.37305 -23.87200 -22.81684
-21.58315 -21.47391 -19.94285 -19.34474 -18.59716 -17.76060 -17.67534 -17.42312
-16.87037 -16.82074 -16.52821 -16.48603 -16.10144 -15.86049 -15.35401 -15.22286
-14.69695 -14.62854 -14.54944 -14.51731 -14.02021 -13.65817 -13.63241 -13.34457
-13.31291 -13.16029 -12.98193 -12.86715 -12.84873 -12.61112 -12.48669 -12.38293
-11.89597 -11.73868 -11.44982 -11.14770 -11.12130 -10.85169 -10.71895 -10.27118
-10.24732 -10.19109 -9.75481 -8.64471 -8.33834 -6.10979 0.33887 1.26807
1.44046 1.46634 1.56105 1.58255 2.04886 2.21623 2.26023 2.29815
3.00333 3.30241 3.32098 3.39147 3.55470 3.56791 3.81707 3.94133
3.96244 4.01567 4.23605 4.27013 4.31859 4.39304 4.44871 4.52317
4.58814 4.65827 4.73583 4.74077 4.76366 4.80311 4.91141 4.98100
5.03800 5.07747 5.30010 5.34660 5.36133 5.41278 5.42901 5.71393
6.20542 6.42836 6.47063 6.84642 7.07852 7.16651 7.18943 8.74844
Molecular weight = 342.14amu
Principal moments of inertia in cm(-1)
A = 0.010426 B = 0.002508 C = 0.002120
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2684.940701 B =11159.996382 C =13203.421943
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.107 4.107
2 C -0.185 4.185
3 C 0.553 3.447
4 O -0.578 6.578
5 N -0.720 5.720
6 C 0.128 3.872
7 C 0.141 3.859
8 H 0.102 0.898
9 C 0.070 3.930
10 O -0.580 6.580
11 N -0.705 5.705
12 C 0.541 3.459
13 O -0.558 6.558
14 C -0.132 4.132
15 S -0.142 6.142
16 C -0.547 4.547
17 H 0.081 0.919
18 C 0.015 3.985
19 N -0.910 5.910
20 Si 0.995 3.005
21 H -0.261 1.261
22 H -0.279 1.279
23 H -0.264 1.264
24 C -0.077 4.077
25 C -0.112 4.112
26 C -0.133 4.133
27 C -0.097 4.097
28 H 0.076 0.924
29 H 0.066 0.934
30 H 0.083 0.917
31 H 0.409 0.591
32 H 0.086 0.914
33 H 0.078 0.922
34 H 0.040 0.960
35 H 0.082 0.918
36 H 0.398 0.602
37 H 0.413 0.587
38 H 0.104 0.896
39 H 0.111 0.889
40 H 0.271 0.729
41 H 0.061 0.939
42 H 0.101 0.899
43 H 0.096 0.904
44 H 0.083 0.917
45 H 0.117 0.883
46 H 0.088 0.912
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 19.842 -16.384 4.509 26.125
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.164 4.164
2 C -0.188 4.188
3 C 0.343 3.657
4 O -0.459 6.459
5 N -0.372 5.372
6 C 0.004 3.996
7 C 0.035 3.965
8 H 0.120 0.880
9 C -0.009 4.009
10 O -0.388 6.388
11 N -0.359 5.359
12 C 0.327 3.673
13 O -0.435 6.435
14 C -0.283 4.283
15 S 0.085 5.915
16 C -0.695 4.695
17 H 0.099 0.901
18 C -0.190 4.190
19 N -0.547 5.547
20 Si 0.817 3.183
21 H -0.186 1.186
22 H -0.204 1.204
23 H -0.189 1.189
24 C -0.079 4.079
25 C -0.149 4.149
26 C -0.170 4.170
27 C -0.134 4.134
28 H 0.095 0.905
29 H 0.085 0.915
30 H 0.102 0.898
31 H 0.246 0.754
32 H 0.104 0.896
33 H 0.096 0.904
34 H 0.058 0.942
35 H 0.100 0.900
36 H 0.248 0.752
37 H 0.249 0.751
38 H 0.122 0.878
39 H 0.129 0.871
40 H 0.080 0.920
41 H 0.079 0.921
42 H 0.119 0.881
43 H 0.115 0.885
44 H 0.101 0.899
45 H 0.135 0.865
46 H 0.107 0.893
Dipole moment (debyes) X Y Z Total
from point charges 19.740 -15.815 6.154 26.032
hybrid contribution -0.397 0.160 -2.107 2.150
sum 19.343 -15.655 4.048 25.212
Atomic orbital electron populations
1.20700 0.88809 1.03712 1.03176 1.20532 0.96913 0.90485 1.10882
1.18630 0.86858 0.84705 0.75477 1.90747 1.14944 1.88281 1.51961
1.45912 1.11025 1.05239 1.75064 1.21441 0.93665 0.80604 1.03861
1.21365 0.89819 0.94301 0.90966 0.88035 1.22440 0.93187 0.95960
0.89317 1.86399 1.61280 1.44697 1.46437 1.45772 1.13367 1.55904
1.20871 1.19973 0.82064 0.77863 0.87381 1.90699 1.76682 1.41597
1.34560 1.23378 0.98745 1.06011 1.00170 1.85495 1.09095 1.70403
1.26529 1.23170 1.02905 1.39998 1.03441 0.90080 1.26083 0.97636
0.94066 1.01241 1.70165 1.15521 1.34370 1.34596 0.85047 0.76931
0.79058 0.77245 1.18600 1.20437 1.18886 1.23691 0.98642 0.95074
0.90464 1.22271 0.93561 0.97061 1.01961 1.22702 0.96526 0.97505
1.00293 1.22358 0.98925 0.89160 1.02922 0.90534 0.91507 0.89807
0.75394 0.89569 0.90369 0.94182 0.89994 0.75237 0.75101 0.87824
0.87072 0.92007 0.92073 0.88077 0.88542 0.89868 0.86530 0.89333
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.11 -1.60 9.57 71.24 0.68 -0.91 16
2 C -0.19 -3.61 6.00 -18.70 -0.11 -3.72 16
3 C 0.55 13.19 7.75 86.57 0.67 13.86 16
4 O -0.58 -17.39 15.15 -4.08 -0.06 -17.46 16
5 N -0.72 -14.41 5.33 -466.72 -2.49 -16.90 16
6 C 0.13 2.51 5.12 86.38 0.44 2.95 16
7 C 0.14 2.94 2.53 45.00 0.11 3.05 16
8 H 0.10 2.30 7.58 -2.38 -0.02 2.28 16
9 C 0.07 1.35 6.85 71.98 0.49 1.84 16
10 O -0.58 -10.44 12.64 -148.98 -1.88 -12.32 16
11 N -0.71 -16.88 4.47 -442.53 -1.98 -18.85 16
12 C 0.54 18.42 7.81 87.66 0.68 19.10 16
13 O -0.56 -23.55 15.52 -3.02 -0.05 -23.60 16
14 C -0.13 -5.00 6.16 71.24 0.44 -4.56 16
15 S -0.14 -7.64 20.57 -56.49 -1.16 -8.80 16
16 C -0.55 -30.63 9.50 67.95 0.65 -29.99 16
17 H 0.08 4.22 7.80 -2.91 -0.02 4.20 16
18 C 0.01 0.82 5.49 84.86 0.47 1.29 16
19 N -0.91 -55.01 13.22 21.65 0.29 -54.73 16
20 Si 1.00 42.96 29.55 68.60 2.03 44.98 16
21 H -0.26 -10.67 7.11 99.48 0.71 -9.96 16
22 H -0.28 -11.77 7.11 99.48 0.71 -11.06 16
23 H -0.26 -10.89 7.11 99.48 0.71 -10.18 16
24 C -0.08 -1.36 6.60 -17.17 -0.11 -1.47 16
25 C -0.11 -1.91 6.99 30.06 0.21 -1.70 16
26 C -0.13 -1.49 8.17 30.94 0.25 -1.24 16
27 C -0.10 -1.06 7.71 30.15 0.23 -0.83 16
28 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16
29 H 0.07 0.98 6.70 -2.39 -0.02 0.96 16
30 H 0.08 1.02 7.91 -2.38 -0.02 1.00 16
31 H 0.41 7.46 6.24 -92.71 -0.58 6.88 16
32 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16
33 H 0.08 1.72 7.39 -2.39 -0.02 1.70 16
34 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16
35 H 0.08 1.15 8.14 -2.39 -0.02 1.14 16
36 H 0.40 3.99 9.12 -74.06 -0.68 3.32 16
37 H 0.41 8.45 8.60 -92.71 -0.80 7.65 16
38 H 0.10 3.66 8.14 -2.40 -0.02 3.64 16
39 H 0.11 3.74 8.14 -2.40 -0.02 3.72 16
40 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16
41 H 0.06 1.33 7.49 -2.38 -0.02 1.32 16
42 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16
43 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16
44 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16
45 H 0.12 0.92 8.14 -2.38 -0.02 0.90 16
46 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16
Total: -1.00 -79.16 400.73 -1.22 -80.38
By element:
Atomic # 1 Polarization: 30.64 SS G_CDS: -1.03 Total: 29.61 kcal
Atomic # 6 Polarization: -7.43 SS G_CDS: 5.11 Total: -2.32 kcal
Atomic # 7 Polarization: -86.30 SS G_CDS: -4.18 Total: -90.48 kcal
Atomic # 8 Polarization: -51.39 SS G_CDS: -1.99 Total: -53.38 kcal
Atomic # 14 Polarization: 42.96 SS G_CDS: 2.03 Total: 44.98 kcal
Atomic # 16 Polarization: -7.64 SS G_CDS: -1.16 Total: -8.80 kcal
Total: -79.16 -1.22 -80.38 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001738880644.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -37.994 kcal
(2) G-P(sol) polarization free energy of solvation -79.159 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.153 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.225 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.384 kcal
(6) G-S(sol) free energy of system = (1) + (5) -118.378 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.60 seconds