Wall clock time and date at job start Sat Apr 11 2020 06:32:45
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.30994 * 1
3 3 C 1.50698 * 119.99918 * 2 1
4 4 C 1.52998 * 109.47366 * 240.00144 * 3 2 1
5 5 O 1.42899 * 109.47314 * 359.97438 * 3 2 1
6 6 C 1.52999 * 109.47471 * 120.00145 * 3 2 1
7 7 C 1.50698 * 109.47471 * 179.97438 * 6 3 2
8 8 O 1.21275 * 119.99964 * 0.02562 * 7 6 3
9 9 N 1.34773 * 119.99864 * 179.97438 * 7 6 3
10 10 C 1.46498 * 120.00252 * 0.02562 * 9 7 6
11 11 C 1.46500 * 119.99865 * 180.02562 * 9 7 6
12 12 C 1.53501 * 114.20747 * 239.99936 * 11 9 7
13 13 N 1.47065 * 87.98741 * 220.14872 * 12 11 9
14 14 C 1.34775 * 136.05752 * 207.08848 * 13 12 11
15 15 O 1.21276 * 119.99984 * 359.97438 * 14 13 12
16 16 C 1.50698 * 120.00022 * 180.02562 * 14 13 12
17 17 S 1.80998 * 109.47116 * 179.97438 * 16 14 13
18 18 C 1.76199 * 100.00013 * 179.97438 * 17 16 14
19 19 H 1.07997 * 120.00250 * 0.02562 * 18 17 16
20 20 C 1.38798 * 120.00102 * 179.72368 * 18 17 16
21 21 N 1.31626 * 120.00155 * 0.02562 * 20 18 17
22 22 Si 1.86800 * 120.00292 * 179.97438 * 20 18 17
23 23 H 1.48501 * 109.47145 * 60.00107 * 22 20 18
24 24 H 1.48496 * 109.47291 * 180.02562 * 22 20 18
25 25 H 1.48499 * 109.47229 * 300.00299 * 22 20 18
26 26 C 1.47067 * 87.88377 * 27.34414 * 13 12 11
27 27 H 1.08006 * 119.99895 * 179.97438 * 1 2 3
28 28 H 1.07995 * 120.00442 * 359.97438 * 1 2 3
29 29 H 1.08002 * 120.00456 * 180.02562 * 2 1 3
30 30 H 1.09004 * 109.46983 * 299.99973 * 4 3 2
31 31 H 1.09002 * 109.47182 * 59.99783 * 4 3 2
32 32 H 1.08999 * 109.47539 * 179.97438 * 4 3 2
33 33 H 0.96710 * 113.99419 * 60.00006 * 5 3 2
34 34 H 1.09004 * 109.47039 * 59.99928 * 6 3 2
35 35 H 1.09000 * 109.46850 * 300.00109 * 6 3 2
36 36 H 1.08997 * 109.47425 * 269.99969 * 10 9 7
37 37 H 1.08998 * 109.46947 * 30.00222 * 10 9 7
38 38 H 1.08999 * 109.47186 * 150.00105 * 10 9 7
39 39 H 1.09001 * 113.28417 * 13.06633 * 11 9 7
40 40 H 1.09001 * 113.46643 * 105.36573 * 12 11 9
41 41 H 1.09004 * 113.51834 * 334.94016 * 12 11 9
42 42 H 1.09001 * 109.47434 * 59.99478 * 16 14 13
43 43 H 1.08999 * 109.47072 * 299.99957 * 16 14 13
44 44 H 0.97004 * 120.00604 * 179.97438 * 21 20 18
45 45 H 1.09001 * 113.47005 * 87.43764 * 26 13 12
46 46 H 1.09003 * 113.46723 * 217.87945 * 26 13 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.3099 0.0000 0.0000
3 6 2.0634 1.3051 0.0000
4 6 2.9430 1.3862 -1.2492
5 8 1.1348 2.3913 -0.0006
6 6 2.9431 1.3862 1.2492
7 6 3.6970 2.6910 1.2489
8 8 3.5454 3.4788 0.3393
9 7 4.5391 2.9830 2.2599
10 6 4.7219 2.0317 3.3589
11 6 5.2716 4.2517 2.2599
12 6 6.7988 4.0968 2.2603
13 7 6.8605 5.2198 3.2078
14 6 7.7592 6.1723 3.5265
15 8 8.8269 6.2149 2.9529
16 6 7.4378 7.1837 4.5965
17 16 8.8335 8.3194 4.7919
18 6 8.2036 9.3621 6.0649
19 1 7.2194 9.1831 6.4720
20 6 8.9747 10.4098 6.5489
21 7 10.1764 10.6247 6.0566
22 14 8.3066 11.5157 7.8980
23 1 8.0102 10.7015 9.1040
24 1 9.3166 12.5508 8.2350
25 1 7.0617 12.1743 7.4272
26 6 5.5126 4.8423 3.6589
27 1 -0.5400 -0.9354 -0.0004
28 1 -0.5400 0.9352 0.0004
29 1 1.8500 -0.9353 -0.0004
30 1 3.6514 0.5577 -1.2492
31 1 2.3164 1.3285 -2.1392
32 1 3.4877 2.3304 -1.2495
33 1 0.5432 2.4033 0.7643
34 1 3.6515 0.5577 1.2492
35 1 2.3164 1.3285 2.1392
36 1 3.9964 2.2408 4.1450
37 1 4.5747 1.0169 2.9892
38 1 5.7306 2.1295 3.7601
39 1 4.8952 4.9666 1.5281
40 1 7.2576 4.3163 1.2963
41 1 7.1400 3.1521 2.6840
42 1 7.2539 6.6690 5.5396
43 1 6.5489 7.7457 4.3100
44 1 10.7152 11.3571 6.3946
45 1 5.5138 4.0940 4.4515
46 1 4.8757 5.6971 3.8864
RHF calculation, no. of doubly occupied orbitals= 62
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001506278583.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:32:45
Heat of formation + Delta-G solvation = -44.492419 kcal
Electronic energy + Delta-G solvation = -27078.178800 eV
Core-core repulsion = 23097.062409 eV
Total energy + Delta-G solvation = -3981.116391 eV
No. of doubly occupied orbitals = 62
Molecular weight
(most abundant/longest-lived isotopes) = 342.145 amu
Computer time = 0.84 seconds
Orbital eigenvalues (eV)
-41.14460 -39.97770 -38.37653 -37.45445 -35.16023 -33.42586 -32.44480 -31.77560
-30.50226 -28.79062 -27.85427 -27.07137 -26.07064 -25.44379 -23.58273 -21.84491
-20.11107 -19.56345 -19.09366 -17.83942 -17.66542 -17.36449 -16.75186 -16.38556
-16.26002 -15.92506 -15.35747 -14.87521 -14.81259 -14.80534 -14.05761 -14.02010
-13.91094 -13.37423 -13.26428 -13.01959 -12.88415 -12.79805 -12.65422 -12.56022
-12.50837 -12.42695 -12.13334 -11.88825 -11.79622 -11.49815 -11.22385 -11.05254
-11.04695 -10.78680 -10.61122 -9.96558 -9.88326 -9.85124 -9.47909 -9.07445
-9.02248 -8.68144 -8.26900 -6.52720 -6.22802 -3.94189 1.69280 2.26010
2.32923 2.81383 3.05770 3.22674 3.24416 3.28253 3.54374 3.79653
3.99140 4.10940 4.18669 4.22657 4.43181 4.47699 4.53625 4.62663
4.74065 4.79828 4.89932 4.94668 5.00770 5.12253 5.15077 5.19043
5.19397 5.31005 5.33077 5.46540 5.50940 5.56526 5.64458 5.70449
5.84850 5.89114 5.98721 6.07580 6.10783 6.16122 6.22043 6.94592
7.29849 7.57809 7.76731 7.84780 8.33543 8.47042 9.22127 10.84567
Molecular weight = 342.14amu
Principal moments of inertia in cm(-1)
A = 0.026479 B = 0.001808 C = 0.001760
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1057.204574 B =15487.194422 C =15908.579022
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.179 4.179
2 C -0.189 4.189
3 C 0.176 3.824
4 C -0.148 4.148
5 O -0.537 6.537
6 C -0.163 4.163
7 C 0.517 3.483
8 O -0.509 6.509
9 N -0.608 5.608
10 C 0.070 3.930
11 C 0.111 3.889
12 C 0.091 3.909
13 N -0.649 5.649
14 C 0.566 3.434
15 O -0.510 6.510
16 C -0.144 4.144
17 S -0.059 6.059
18 C -0.537 4.537
19 H 0.072 0.928
20 C 0.074 3.926
21 N -0.867 5.867
22 Si 0.919 3.081
23 H -0.274 1.274
24 H -0.282 1.282
25 H -0.274 1.274
26 C 0.091 3.909
27 H 0.100 0.900
28 H 0.105 0.895
29 H 0.116 0.884
30 H 0.063 0.937
31 H 0.060 0.940
32 H 0.094 0.906
33 H 0.369 0.631
34 H 0.103 0.897
35 H 0.096 0.904
36 H 0.062 0.938
37 H 0.075 0.925
38 H 0.077 0.923
39 H 0.136 0.864
40 H 0.083 0.917
41 H 0.082 0.918
42 H 0.089 0.911
43 H 0.090 0.910
44 H 0.269 0.731
45 H 0.087 0.913
46 H 0.086 0.914
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -19.709 -25.912 -7.427 33.392
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.216 4.216
2 C -0.207 4.207
3 C 0.134 3.866
4 C -0.205 4.205
5 O -0.342 6.342
6 C -0.203 4.203
7 C 0.305 3.695
8 O -0.383 6.383
9 N -0.342 5.342
10 C -0.073 4.073
11 C 0.006 3.994
12 C -0.033 4.033
13 N -0.388 5.388
14 C 0.356 3.644
15 O -0.383 6.383
16 C -0.295 4.295
17 S 0.168 5.832
18 C -0.685 4.685
19 H 0.091 0.909
20 C -0.135 4.135
21 N -0.502 5.502
22 Si 0.746 3.254
23 H -0.199 1.199
24 H -0.208 1.208
25 H -0.199 1.199
26 C -0.034 4.034
27 H 0.118 0.882
28 H 0.123 0.877
29 H 0.134 0.866
30 H 0.082 0.918
31 H 0.079 0.921
32 H 0.113 0.887
33 H 0.215 0.785
34 H 0.121 0.879
35 H 0.115 0.885
36 H 0.080 0.920
37 H 0.093 0.907
38 H 0.096 0.904
39 H 0.154 0.846
40 H 0.101 0.899
41 H 0.100 0.900
42 H 0.107 0.893
43 H 0.108 0.892
44 H 0.079 0.921
45 H 0.105 0.895
46 H 0.104 0.896
Dipole moment (debyes) X Y Z Total
from point charges -17.534 -24.969 -9.277 31.890
hybrid contribution -1.887 0.189 2.393 3.053
sum -19.421 -24.780 -6.884 32.227
Atomic orbital electron populations
1.23896 0.96058 1.02498 0.99125 1.23596 0.96756 0.98714 1.01631
1.19874 0.88038 0.84170 0.94475 1.21950 0.98891 1.04311 0.95379
1.86757 1.50004 1.48791 1.48663 1.22440 1.00363 0.96691 1.00852
1.20490 0.78985 0.88565 0.81498 1.90717 1.63368 1.49737 1.34510
1.47767 1.44049 1.18863 1.23547 1.21893 1.02974 0.92619 0.89820
1.23000 0.91209 0.86435 0.98771 1.23332 0.94814 0.90265 0.94915
1.49349 1.18232 1.29938 1.41313 1.19928 0.81896 0.79707 0.82874
1.90727 1.22566 1.72416 1.52583 1.23478 1.07335 1.00033 0.98646
1.85418 1.16812 1.30681 1.50314 1.22811 1.05141 1.17032 1.23487
0.90945 1.24991 0.94629 0.96817 0.97092 1.70004 1.09124 1.29973
1.41125 0.86214 0.78656 0.79581 0.80991 1.19945 1.20776 1.19903
1.23415 0.83694 0.99808 0.96458 0.88173 0.87656 0.86619 0.91839
0.92084 0.88745 0.78454 0.87855 0.88522 0.91975 0.90662 0.90430
0.84591 0.89896 0.90013 0.89268 0.89151 0.92084 0.89506 0.89551
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.18 -0.85 13.93 29.02 0.40 -0.45 16
2 C -0.19 -0.96 8.77 -36.03 -0.32 -1.27 16
3 C 0.18 1.19 0.94 -91.77 -0.09 1.11 16
4 C -0.15 -1.22 8.50 37.16 0.32 -0.91 16
5 O -0.54 -4.63 10.85 -53.48 -0.58 -5.21 16
6 C -0.16 -0.83 3.49 -27.88 -0.10 -0.93 16
7 C 0.52 4.42 7.23 -10.99 -0.08 4.34 16
8 O -0.51 -6.47 12.47 -12.69 -0.16 -6.62 16
9 N -0.61 -4.42 3.11 -173.56 -0.54 -4.96 16
10 C 0.07 0.27 8.92 59.85 0.53 0.80 16
11 C 0.11 1.06 4.57 -67.67 -0.31 0.75 16
12 C 0.09 1.03 8.17 -8.51 -0.07 0.96 16
13 N -0.65 -9.32 3.69 -185.07 -0.68 -10.00 16
14 C 0.57 11.12 8.10 -10.99 -0.09 11.03 16
15 O -0.51 -12.12 16.64 5.56 0.09 -12.03 16
16 C -0.14 -2.99 5.98 36.00 0.22 -2.77 16
17 S -0.06 -1.62 20.57 -107.50 -2.21 -3.83 16
18 C -0.54 -15.33 9.50 30.94 0.29 -15.03 16
19 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16
20 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16
21 N -0.87 -26.20 13.22 55.49 0.73 -25.46 16
22 Si 0.92 21.39 29.55 -169.99 -5.02 16.37 16
23 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16
24 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16
25 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16
26 C 0.09 0.89 7.85 -8.37 -0.07 0.83 16
27 H 0.10 0.37 8.06 -52.48 -0.42 -0.06 16
28 H 0.11 0.51 6.41 -52.49 -0.34 0.17 16
29 H 0.12 0.44 8.06 -52.49 -0.42 0.01 16
30 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16
31 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16
32 H 0.09 1.04 5.51 -51.93 -0.29 0.75 16
33 H 0.37 1.89 8.05 45.56 0.37 2.25 16
34 H 0.10 0.33 7.40 -51.93 -0.38 -0.06 16
35 H 0.10 0.31 8.11 -51.93 -0.42 -0.11 16
36 H 0.06 0.18 8.14 -51.93 -0.42 -0.24 16
37 H 0.07 0.15 6.44 -51.93 -0.33 -0.19 16
38 H 0.08 0.31 6.18 -51.93 -0.32 -0.01 16
39 H 0.14 1.57 7.29 -51.93 -0.38 1.19 16
40 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16
41 H 0.08 0.76 6.97 -51.93 -0.36 0.40 16
42 H 0.09 1.70 8.14 -51.91 -0.42 1.28 16
43 H 0.09 1.75 8.14 -51.92 -0.42 1.32 16
44 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16
45 H 0.09 0.66 6.57 -51.93 -0.34 0.32 16
46 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16
LS Contribution 391.01 15.07 5.89 5.89
Total: -1.00 -38.10 391.01 -8.07 -46.17
By element:
Atomic # 1 Polarization: 5.35 SS G_CDS: -6.15 Total: -0.79 kcal
Atomic # 6 Polarization: -0.07 SS G_CDS: 0.55 Total: 0.48 kcal
Atomic # 7 Polarization: -39.94 SS G_CDS: -0.49 Total: -40.43 kcal
Atomic # 8 Polarization: -23.22 SS G_CDS: -0.65 Total: -23.86 kcal
Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal
Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.83 kcal
Total LS contribution 5.89 Total: 5.89 kcal
Total: -38.10 -8.07 -46.17 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001506278583.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 1.674 kcal
(2) G-P(sol) polarization free energy of solvation -38.097 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.422 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.070 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.167 kcal
(6) G-S(sol) free energy of system = (1) + (5) -44.492 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.84 seconds