Wall clock time and date at job start Sat Apr 11 2020 06:32:44
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.30994 * 1
3 3 C 1.50698 * 119.99918 * 2 1
4 4 C 1.52998 * 109.47366 * 240.00144 * 3 2 1
5 5 O 1.42899 * 109.47314 * 359.97438 * 3 2 1
6 6 C 1.52999 * 109.47471 * 120.00145 * 3 2 1
7 7 C 1.50698 * 109.47471 * 179.97438 * 6 3 2
8 8 O 1.21275 * 119.99964 * 0.02562 * 7 6 3
9 9 N 1.34773 * 119.99864 * 179.97438 * 7 6 3
10 10 C 1.46498 * 120.00252 * 0.02562 * 9 7 6
11 11 C 1.46500 * 119.99865 * 180.02562 * 9 7 6
12 12 C 1.53501 * 114.20747 * 239.99936 * 11 9 7
13 13 N 1.47065 * 87.98741 * 220.14872 * 12 11 9
14 14 C 1.34775 * 136.05752 * 207.08848 * 13 12 11
15 15 O 1.21276 * 119.99984 * 359.97438 * 14 13 12
16 16 C 1.50698 * 120.00022 * 180.02562 * 14 13 12
17 17 S 1.80998 * 109.47116 * 179.97438 * 16 14 13
18 18 C 1.76199 * 100.00013 * 179.97438 * 17 16 14
19 19 H 1.07997 * 120.00250 * 0.02562 * 18 17 16
20 20 C 1.38798 * 120.00102 * 179.72368 * 18 17 16
21 21 N 1.31626 * 120.00155 * 0.02562 * 20 18 17
22 22 Si 1.86800 * 120.00292 * 179.97438 * 20 18 17
23 23 H 1.48501 * 109.47145 * 60.00107 * 22 20 18
24 24 H 1.48496 * 109.47291 * 180.02562 * 22 20 18
25 25 H 1.48499 * 109.47229 * 300.00299 * 22 20 18
26 26 C 1.47067 * 87.88377 * 27.34414 * 13 12 11
27 27 H 1.08006 * 119.99895 * 179.97438 * 1 2 3
28 28 H 1.07995 * 120.00442 * 359.97438 * 1 2 3
29 29 H 1.08002 * 120.00456 * 180.02562 * 2 1 3
30 30 H 1.09004 * 109.46983 * 299.99973 * 4 3 2
31 31 H 1.09002 * 109.47182 * 59.99783 * 4 3 2
32 32 H 1.08999 * 109.47539 * 179.97438 * 4 3 2
33 33 H 0.96710 * 113.99419 * 60.00006 * 5 3 2
34 34 H 1.09004 * 109.47039 * 59.99928 * 6 3 2
35 35 H 1.09000 * 109.46850 * 300.00109 * 6 3 2
36 36 H 1.08997 * 109.47425 * 269.99969 * 10 9 7
37 37 H 1.08998 * 109.46947 * 30.00222 * 10 9 7
38 38 H 1.08999 * 109.47186 * 150.00105 * 10 9 7
39 39 H 1.09001 * 113.28417 * 13.06633 * 11 9 7
40 40 H 1.09001 * 113.46643 * 105.36573 * 12 11 9
41 41 H 1.09004 * 113.51834 * 334.94016 * 12 11 9
42 42 H 1.09001 * 109.47434 * 59.99478 * 16 14 13
43 43 H 1.08999 * 109.47072 * 299.99957 * 16 14 13
44 44 H 0.97004 * 120.00604 * 179.97438 * 21 20 18
45 45 H 1.09001 * 113.47005 * 87.43764 * 26 13 12
46 46 H 1.09003 * 113.46723 * 217.87945 * 26 13 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.3099 0.0000 0.0000
3 6 2.0634 1.3051 0.0000
4 6 2.9430 1.3862 -1.2492
5 8 1.1348 2.3913 -0.0006
6 6 2.9431 1.3862 1.2492
7 6 3.6970 2.6910 1.2489
8 8 3.5454 3.4788 0.3393
9 7 4.5391 2.9830 2.2599
10 6 4.7219 2.0317 3.3589
11 6 5.2716 4.2517 2.2599
12 6 6.7988 4.0968 2.2603
13 7 6.8605 5.2198 3.2078
14 6 7.7592 6.1723 3.5265
15 8 8.8269 6.2149 2.9529
16 6 7.4378 7.1837 4.5965
17 16 8.8335 8.3194 4.7919
18 6 8.2036 9.3621 6.0649
19 1 7.2194 9.1831 6.4720
20 6 8.9747 10.4098 6.5489
21 7 10.1764 10.6247 6.0566
22 14 8.3066 11.5157 7.8980
23 1 8.0102 10.7015 9.1040
24 1 9.3166 12.5508 8.2350
25 1 7.0617 12.1743 7.4272
26 6 5.5126 4.8423 3.6589
27 1 -0.5400 -0.9354 -0.0004
28 1 -0.5400 0.9352 0.0004
29 1 1.8500 -0.9353 -0.0004
30 1 3.6514 0.5577 -1.2492
31 1 2.3164 1.3285 -2.1392
32 1 3.4877 2.3304 -1.2495
33 1 0.5432 2.4033 0.7643
34 1 3.6515 0.5577 1.2492
35 1 2.3164 1.3285 2.1392
36 1 3.9964 2.2408 4.1450
37 1 4.5747 1.0169 2.9892
38 1 5.7306 2.1295 3.7601
39 1 4.8952 4.9666 1.5281
40 1 7.2576 4.3163 1.2963
41 1 7.1400 3.1521 2.6840
42 1 7.2539 6.6690 5.5396
43 1 6.5489 7.7457 4.3100
44 1 10.7152 11.3571 6.3946
45 1 5.5138 4.0940 4.4515
46 1 4.8757 5.6971 3.8864
RHF calculation, no. of doubly occupied orbitals= 62
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001506278583.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:32:44
Heat of formation + Delta-G solvation = -72.802043 kcal
Electronic energy + Delta-G solvation = -27079.406398 eV
Core-core repulsion = 23097.062409 eV
Total energy + Delta-G solvation = -3982.343989 eV
No. of doubly occupied orbitals = 62
Molecular weight
(most abundant/longest-lived isotopes) = 342.145 amu
Computer time = 0.68 seconds
Orbital eigenvalues (eV)
-41.98431 -40.83985 -39.35368 -38.44889 -35.89483 -34.60311 -33.92575 -32.36431
-31.80020 -29.72089 -28.55479 -27.78511 -27.62649 -26.92471 -24.22468 -22.64976
-20.56205 -20.51022 -20.11024 -19.57118 -18.33477 -18.20223 -17.87966 -17.18487
-17.05001 -16.89260 -16.63574 -16.36816 -16.07883 -15.80295 -15.42921 -14.91963
-14.76589 -14.45734 -14.13133 -13.87929 -13.86513 -13.72616 -13.62556 -13.22562
-13.18602 -13.13591 -13.06240 -13.00680 -12.87186 -12.65443 -12.60152 -12.41895
-12.07338 -11.95508 -11.77693 -11.14247 -11.13270 -11.09174 -10.53228 -10.32593
-10.28691 -9.88181 -9.63682 -8.70962 -8.35877 -6.15531 1.12564 1.33736
1.40231 1.43569 1.46039 1.52526 1.65203 1.75210 2.20203 2.25882
2.98219 3.14690 3.24113 3.35778 3.50926 3.59962 3.78958 3.83628
3.95154 4.08103 4.16479 4.24788 4.25695 4.37683 4.39182 4.44553
4.46512 4.52172 4.62797 4.72160 4.75524 4.79833 4.89489 4.91313
4.98411 5.05230 5.18490 5.36996 5.39841 5.51274 5.70876 5.85506
6.18018 6.35579 6.51893 6.91187 7.00358 7.04858 7.24766 8.73195
Molecular weight = 342.14amu
Principal moments of inertia in cm(-1)
A = 0.026479 B = 0.001808 C = 0.001760
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1057.204574 B =15487.194422 C =15908.579022
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.181 4.181
2 C -0.188 4.188
3 C 0.171 3.829
4 C -0.150 4.150
5 O -0.565 6.565
6 C -0.153 4.153
7 C 0.511 3.489
8 O -0.560 6.560
9 N -0.602 5.602
10 C 0.059 3.941
11 C 0.124 3.876
12 C 0.090 3.910
13 N -0.649 5.649
14 C 0.564 3.436
15 O -0.566 6.566
16 C -0.117 4.117
17 S -0.151 6.151
18 C -0.548 4.548
19 H 0.084 0.916
20 C 0.014 3.986
21 N -0.911 5.911
22 Si 1.000 3.000
23 H -0.260 1.260
24 H -0.279 1.279
25 H -0.263 1.263
26 C 0.095 3.905
27 H 0.113 0.887
28 H 0.100 0.900
29 H 0.134 0.866
30 H 0.084 0.916
31 H 0.047 0.953
32 H 0.063 0.937
33 H 0.381 0.619
34 H 0.132 0.868
35 H 0.125 0.875
36 H 0.080 0.920
37 H 0.101 0.899
38 H 0.080 0.920
39 H 0.111 0.889
40 H 0.063 0.937
41 H 0.111 0.889
42 H 0.111 0.889
43 H 0.105 0.895
44 H 0.272 0.728
45 H 0.124 0.876
46 H 0.093 0.907
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -22.363 -28.498 -5.171 36.592
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.218 4.218
2 C -0.206 4.206
3 C 0.130 3.870
4 C -0.207 4.207
5 O -0.372 6.372
6 C -0.192 4.192
7 C 0.301 3.699
8 O -0.437 6.437
9 N -0.335 5.335
10 C -0.082 4.082
11 C 0.018 3.982
12 C -0.034 4.034
13 N -0.386 5.386
14 C 0.354 3.646
15 O -0.444 6.444
16 C -0.268 4.268
17 S 0.077 5.923
18 C -0.695 4.695
19 H 0.102 0.898
20 C -0.191 4.191
21 N -0.547 5.547
22 Si 0.821 3.179
23 H -0.184 1.184
24 H -0.204 1.204
25 H -0.187 1.187
26 C -0.027 4.027
27 H 0.131 0.869
28 H 0.118 0.882
29 H 0.152 0.848
30 H 0.102 0.898
31 H 0.066 0.934
32 H 0.081 0.919
33 H 0.229 0.771
34 H 0.150 0.850
35 H 0.143 0.857
36 H 0.099 0.901
37 H 0.120 0.880
38 H 0.099 0.901
39 H 0.129 0.871
40 H 0.082 0.918
41 H 0.129 0.871
42 H 0.129 0.871
43 H 0.123 0.877
44 H 0.081 0.919
45 H 0.141 0.859
46 H 0.111 0.889
Dipole moment (debyes) X Y Z Total
from point charges -20.257 -27.630 -6.995 34.967
hybrid contribution -1.171 0.844 1.581 2.141
sum -21.428 -26.787 -5.414 34.727
Atomic orbital electron populations
1.24023 0.96190 1.02898 0.98675 1.23572 0.96745 0.98304 1.01976
1.19947 0.88046 0.84600 0.94432 1.21941 0.99219 1.03433 0.96105
1.86725 1.50782 1.49936 1.49785 1.22451 1.00557 0.95207 1.01030
1.21188 0.78746 0.89281 0.80717 1.90719 1.65013 1.51533 1.36473
1.47803 1.43099 1.18271 1.24315 1.22241 1.03777 0.93025 0.89144
1.22499 0.90108 0.87525 0.98062 1.23609 0.96105 0.90092 0.93618
1.49212 1.18881 1.29105 1.41385 1.19614 0.81968 0.80568 0.82464
1.90700 1.25110 1.74102 1.54510 1.23258 1.04161 0.99030 1.00399
1.85618 1.22090 1.33527 1.51109 1.23157 1.05644 1.17316 1.23406
0.89792 1.26153 0.94757 0.98428 0.99780 1.70177 1.10791 1.30836
1.42927 0.84983 0.78099 0.77230 0.77552 1.18418 1.20368 1.18725
1.23736 0.80755 1.00866 0.97380 0.86883 0.88230 0.84781 0.89770
0.93353 0.91866 0.77062 0.85021 0.85729 0.90120 0.88007 0.90112
0.87093 0.91817 0.87086 0.87091 0.87662 0.91933 0.85878 0.88876
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.18 -1.33 13.93 67.79 0.94 -0.38 16
2 C -0.19 -1.39 8.77 25.65 0.23 -1.16 16
3 C 0.17 2.02 0.94 -11.54 -0.01 2.01 16
4 C -0.15 -2.42 8.50 71.98 0.61 -1.81 16
5 O -0.56 -9.42 10.85 -131.53 -1.43 -10.85 16
6 C -0.15 -1.04 3.49 29.85 0.10 -0.94 16
7 C 0.51 7.81 7.23 87.66 0.63 8.45 16
8 O -0.56 -14.43 12.47 14.43 0.18 -14.25 16
9 N -0.60 -7.06 3.11 -821.40 -2.56 -9.61 16
10 C 0.06 0.17 8.92 127.77 1.14 1.31 16
11 C 0.12 2.20 4.57 45.55 0.21 2.41 16
12 C 0.09 1.92 8.17 83.18 0.68 2.60 16
13 N -0.65 -17.94 3.69 -857.84 -3.16 -21.10 16
14 C 0.56 22.33 8.10 87.66 0.71 23.04 16
15 O -0.57 -28.02 16.64 -3.02 -0.05 -28.07 16
16 C -0.12 -4.83 5.98 71.24 0.43 -4.41 16
17 S -0.15 -8.53 20.57 -56.49 -1.16 -9.69 16
18 C -0.55 -31.46 9.50 67.95 0.65 -30.81 16
19 H 0.08 4.45 7.80 -2.91 -0.02 4.42 16
20 C 0.01 0.78 5.49 84.86 0.47 1.25 16
21 N -0.91 -56.31 13.22 21.65 0.29 -56.02 16
22 Si 1.00 43.55 29.55 68.60 2.03 45.58 16
23 H -0.26 -10.63 7.11 99.48 0.71 -9.92 16
24 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16
25 H -0.26 -10.88 7.11 99.48 0.71 -10.17 16
26 C 0.10 1.61 7.85 83.26 0.65 2.26 16
27 H 0.11 0.53 8.06 -2.91 -0.02 0.51 16
28 H 0.10 0.83 6.41 -2.91 -0.02 0.81 16
29 H 0.13 0.50 8.06 -2.91 -0.02 0.48 16
30 H 0.08 0.92 8.14 -2.38 -0.02 0.90 16
31 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16
32 H 0.06 1.45 5.51 -2.39 -0.01 1.44 16
33 H 0.38 3.52 8.05 -74.05 -0.60 2.92 16
34 H 0.13 0.18 7.40 -2.38 -0.02 0.16 16
35 H 0.12 0.21 8.11 -2.39 -0.02 0.19 16
36 H 0.08 0.01 8.14 -2.39 -0.02 -0.01 16
37 H 0.10 -0.19 6.44 -2.39 -0.02 -0.20 16
38 H 0.08 0.24 6.18 -2.39 -0.01 0.22 16
39 H 0.11 2.61 7.29 -2.39 -0.02 2.59 16
40 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16
41 H 0.11 1.77 6.97 -2.39 -0.02 1.75 16
42 H 0.11 4.05 8.14 -2.40 -0.02 4.03 16
43 H 0.11 3.98 8.14 -2.40 -0.02 3.96 16
44 H 0.27 15.59 8.31 -92.71 -0.77 14.82 16
45 H 0.12 1.28 6.57 -2.39 -0.02 1.27 16
46 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16
Total: -1.00 -89.19 391.01 1.97 -87.22
By element:
Atomic # 1 Polarization: 12.60 SS G_CDS: 0.40 Total: 13.00 kcal
Atomic # 6 Polarization: -3.63 SS G_CDS: 7.44 Total: 3.81 kcal
Atomic # 7 Polarization: -81.30 SS G_CDS: -5.44 Total: -86.74 kcal
Atomic # 8 Polarization: -51.88 SS G_CDS: -1.30 Total: -53.17 kcal
Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.58 kcal
Atomic # 16 Polarization: -8.53 SS G_CDS: -1.16 Total: -9.69 kcal
Total: -89.19 1.97 -87.22 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001506278583.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 14.414 kcal
(2) G-P(sol) polarization free energy of solvation -89.186 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.772 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.970 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.216 kcal
(6) G-S(sol) free energy of system = (1) + (5) -72.802 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.68 seconds