Wall clock time and date at job start Sat Apr 11 2020 06:33:50
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52996 * 1
3 3 C 1.52999 * 109.47238 * 2 1
4 4 C 1.53002 * 109.47273 * 240.00234 * 2 1 3
5 5 C 1.50696 * 109.47061 * 120.00298 * 2 1 3
6 6 O 1.20779 * 120.00209 * 0.02562 * 5 2 1
7 7 C 1.49090 * 119.99912 * 179.97438 * 5 2 1
8 8 O 1.21365 * 120.00148 * 0.02562 * 7 5 2
9 9 N 1.34783 * 120.00005 * 180.02562 * 7 5 2
10 10 C 1.46494 * 120.00079 * 180.02562 * 9 7 5
11 11 H 1.09011 * 112.84816 * 313.96998 * 10 9 7
12 12 C 1.53777 * 113.62056 * 85.16743 * 10 9 7
13 13 C 1.53783 * 87.08115 * 89.11531 * 12 10 9
14 14 H 1.08995 * 113.61348 * 140.06613 * 13 12 10
15 15 N 1.46498 * 113.61604 * 270.88732 * 13 12 10
16 16 C 1.34778 * 119.99856 * 201.85367 * 15 13 12
17 17 O 1.21278 * 120.00354 * 0.02562 * 16 15 13
18 18 C 1.50703 * 119.99713 * 179.97438 * 16 15 13
19 19 S 1.80998 * 109.47043 * 180.02562 * 18 16 15
20 20 C 1.76199 * 100.00187 * 180.02562 * 19 18 16
21 21 H 1.07998 * 119.99545 * 359.97438 * 20 19 18
22 22 C 1.38796 * 120.00080 * 179.97438 * 20 19 18
23 23 N 1.31632 * 119.99976 * 0.02562 * 22 20 19
24 24 Si 1.86802 * 119.99866 * 179.97438 * 22 20 19
25 25 H 1.48493 * 109.46944 * 269.99598 * 24 22 20
26 26 H 1.48493 * 109.47041 * 30.00315 * 24 22 20
27 27 H 1.48505 * 109.46657 * 150.00083 * 24 22 20
28 28 C 1.53778 * 87.07937 * 25.43404 * 13 12 10
29 29 H 1.09003 * 109.47153 * 299.99926 * 1 2 3
30 30 H 1.09000 * 109.47029 * 59.99537 * 1 2 3
31 31 H 1.08998 * 109.47266 * 179.97438 * 1 2 3
32 32 H 1.09005 * 109.47178 * 179.97438 * 3 2 1
33 33 H 1.09000 * 109.47489 * 300.00182 * 3 2 1
34 34 H 1.09003 * 109.46891 * 60.00755 * 3 2 1
35 35 H 1.08999 * 109.46988 * 300.00815 * 4 2 1
36 36 H 1.09008 * 109.47384 * 59.99784 * 4 2 1
37 37 H 1.08991 * 109.47504 * 180.02562 * 4 2 1
38 38 H 0.96999 * 119.99339 * 359.97438 * 9 7 5
39 39 H 1.08999 * 113.61489 * 334.56948 * 12 10 9
40 40 H 1.08996 * 113.69451 * 203.67827 * 12 10 9
41 41 H 0.97003 * 120.00133 * 21.85296 * 15 13 12
42 42 H 1.08996 * 109.46832 * 60.00211 * 18 16 15
43 43 H 1.08997 * 109.47037 * 300.00357 * 18 16 15
44 44 H 0.97002 * 119.99916 * 359.97438 * 23 22 20
45 45 H 1.09005 * 113.61676 * 89.11683 * 28 13 12
46 46 H 1.09007 * 113.61758 * 220.01556 * 28 13 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 6 2.0400 -0.7212 -1.2493
5 6 2.0323 -0.7105 1.2304
6 8 1.2474 -1.1699 2.0252
7 6 3.4981 -0.8472 1.4660
8 8 4.2867 -0.3859 0.6672
9 7 3.9473 -1.4831 2.5662
10 6 5.3876 -1.6169 2.7981
11 1 5.9313 -1.9384 1.9096
12 6 6.0150 -0.3993 3.4971
13 6 5.6822 -1.0916 4.8293
14 1 6.4637 -0.9886 5.5821
15 7 4.3501 -0.7647 5.3439
16 6 4.0788 -0.9148 6.6556
17 8 4.9376 -1.3201 7.4099
18 6 2.7087 -0.5779 7.1850
19 16 2.6595 -0.8820 8.9686
20 6 0.9943 -0.4196 9.3120
21 1 0.3541 -0.0747 8.5136
22 6 0.5055 -0.4987 10.6086
23 7 1.2860 -0.9186 11.5818
24 14 -1.2597 -0.0078 10.9728
25 1 -1.3126 1.4383 11.3061
26 1 -2.1032 -0.2721 9.7796
27 1 -1.7665 -0.7995 12.1225
28 6 5.7360 -2.4225 4.0608
29 1 -0.3633 0.5138 0.8900
30 1 -0.3633 0.5139 -0.8899
31 1 -0.3634 -1.0276 -0.0005
32 1 3.1300 1.4425 0.0005
33 1 1.6767 1.9564 -0.8899
34 1 1.6767 1.9563 0.8901
35 1 1.6766 -1.7488 -1.2494
36 1 1.6766 -0.2074 -2.1393
37 1 3.1299 -0.7216 -1.2491
38 1 3.3169 -1.8514 3.2048
39 1 5.4643 0.5276 3.3373
40 1 7.0844 -0.2929 3.3155
41 1 3.6633 -0.4402 4.7407
42 1 1.9644 -1.2009 6.6892
43 1 2.4918 0.4723 6.9897
44 1 2.2027 -1.1731 11.3927
45 1 6.7293 -2.8706 4.0326
46 1 4.9602 -3.1290 4.3560
RHF calculation, no. of doubly occupied orbitals= 62
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001703926605.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:33:50
Heat of formation + Delta-G solvation = -95.188652 kcal
Electronic energy + Delta-G solvation = -27760.111769 eV
Core-core repulsion = 23776.797024 eV
Total energy + Delta-G solvation = -3983.314745 eV
No. of doubly occupied orbitals = 62
Molecular weight
(most abundant/longest-lived isotopes) = 342.145 amu
Computer time = 0.61 seconds
Orbital eigenvalues (eV)
-41.51151 -40.37212 -38.93886 -37.98594 -36.32942 -33.96651 -32.82982 -32.54621
-29.33440 -27.92135 -27.74114 -26.63826 -26.15830 -24.93292 -24.31407 -22.05220
-20.60428 -20.18799 -19.31986 -18.37394 -17.90168 -17.00924 -16.66264 -16.29172
-16.13558 -15.77554 -15.45701 -15.10902 -14.94523 -14.60771 -14.44201 -14.09059
-13.86153 -13.48281 -13.40515 -13.03108 -12.94209 -12.77425 -12.60699 -12.57254
-12.43733 -12.33014 -12.12441 -12.03558 -11.93510 -11.81626 -11.41063 -11.28976
-11.17658 -10.92030 -10.75716 -10.19924 -9.70949 -9.66486 -9.62346 -9.53158
-9.09938 -9.01391 -8.25390 -6.69957 -6.64128 -4.02350 0.55729 2.21410
2.54018 2.82515 2.86886 3.33220 3.38347 3.45827 3.55682 3.66538
4.01692 4.09494 4.21330 4.23311 4.38155 4.41358 4.50162 4.75543
4.83099 4.95283 5.15789 5.20644 5.20802 5.24198 5.30926 5.36552
5.37498 5.41135 5.41870 5.44719 5.51929 5.56139 5.61631 5.69203
5.71342 5.74802 5.81477 5.83318 5.96750 6.00505 6.39899 6.51377
6.90878 7.48569 7.49738 7.91112 8.40672 8.48359 9.24973 10.79876
Molecular weight = 342.14amu
Principal moments of inertia in cm(-1)
A = 0.010921 B = 0.002811 C = 0.002313
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2563.181325 B = 9956.748973 C =12102.743295
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.138 4.138
2 C -0.093 4.093
3 C -0.145 4.145
4 C -0.144 4.144
5 C 0.356 3.644
6 O -0.410 6.410
7 C 0.478 3.522
8 O -0.499 6.499
9 N -0.693 5.693
10 C 0.117 3.883
11 H 0.101 0.899
12 C -0.153 4.153
13 C 0.122 3.878
14 H 0.107 0.893
15 N -0.723 5.723
16 C 0.534 3.466
17 O -0.512 6.512
18 C -0.133 4.133
19 S -0.114 6.114
20 C -0.608 4.608
21 H 0.066 0.934
22 C 0.035 3.965
23 N -0.884 5.884
24 Si 1.087 2.913
25 H -0.284 1.284
26 H -0.287 1.287
27 H -0.279 1.279
28 C -0.156 4.156
29 H 0.064 0.936
30 H 0.068 0.932
31 H 0.062 0.938
32 H 0.079 0.921
33 H 0.071 0.929
34 H 0.057 0.943
35 H 0.056 0.944
36 H 0.071 0.929
37 H 0.079 0.921
38 H 0.411 0.589
39 H 0.077 0.923
40 H 0.108 0.892
41 H 0.395 0.605
42 H 0.093 0.907
43 H 0.092 0.908
44 H 0.278 0.722
45 H 0.110 0.890
46 H 0.081 0.919
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 4.850 1.090 -28.119 28.555
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.195 4.195
2 C -0.095 4.095
3 C -0.202 4.202
4 C -0.201 4.201
5 C 0.225 3.775
6 O -0.278 6.278
7 C 0.261 3.739
8 O -0.374 6.374
9 N -0.348 5.348
10 C 0.012 3.988
11 H 0.119 0.881
12 C -0.192 4.192
13 C 0.015 3.985
14 H 0.125 0.875
15 N -0.378 5.378
16 C 0.320 3.680
17 O -0.385 6.385
18 C -0.284 4.284
19 S 0.113 5.887
20 C -0.756 4.756
21 H 0.085 0.915
22 C -0.175 4.175
23 N -0.519 5.519
24 Si 0.913 3.087
25 H -0.210 1.210
26 H -0.213 1.213
27 H -0.205 1.205
28 C -0.195 4.195
29 H 0.083 0.917
30 H 0.087 0.913
31 H 0.081 0.919
32 H 0.098 0.902
33 H 0.090 0.910
34 H 0.077 0.923
35 H 0.075 0.925
36 H 0.089 0.911
37 H 0.098 0.902
38 H 0.248 0.752
39 H 0.096 0.904
40 H 0.126 0.874
41 H 0.230 0.770
42 H 0.111 0.889
43 H 0.111 0.889
44 H 0.090 0.910
45 H 0.128 0.872
46 H 0.099 0.901
Dipole moment (debyes) X Y Z Total
from point charges 5.317 0.608 -25.747 26.298
hybrid contribution -0.655 0.371 -2.181 2.307
sum 4.662 0.978 -27.929 28.332
Atomic orbital electron populations
1.21806 0.91931 1.02994 1.02811 1.20955 0.97556 0.97412 0.93574
1.21925 1.03124 0.92356 1.02782 1.21914 1.03106 0.99765 0.95287
1.25005 0.88375 0.76880 0.87255 1.90472 1.58488 1.35419 1.43420
1.20997 0.90990 0.79717 0.82167 1.90721 1.56940 1.45498 1.44195
1.45897 1.08227 1.56592 1.24116 1.22052 0.80306 0.97659 0.98786
0.88142 1.23730 1.02530 0.98180 0.94744 1.21853 0.86475 0.94491
0.95634 0.87479 1.45821 1.13311 1.69550 1.09087 1.20336 0.89837
0.76604 0.81223 1.90704 1.47893 1.43633 1.56308 1.23336 0.95777
1.04877 1.04424 1.84803 1.18840 1.87451 0.97637 1.23731 0.96614
1.55467 0.99747 0.91550 1.26059 1.06352 0.94035 0.91054 1.70775
1.08920 1.38234 1.33927 0.83291 0.72823 0.76724 0.75881 1.21036
1.21258 1.20487 1.23784 1.03814 0.97810 0.94064 0.91726 0.91328
0.91886 0.90212 0.91039 0.92341 0.92516 0.91052 0.90231 0.75215
0.90392 0.87382 0.77017 0.88865 0.88945 0.90973 0.87209 0.90050
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -0.98 7.76 37.16 0.29 -0.70 16
2 C -0.09 -0.70 0.76 -155.66 -0.12 -0.82 16
3 C -0.14 -1.00 8.29 37.16 0.31 -0.69 16
4 C -0.14 -0.94 8.29 37.16 0.31 -0.63 16
5 C 0.36 3.33 6.03 -29.81 -0.18 3.16 16
6 O -0.41 -4.63 16.09 5.98 0.10 -4.54 16
7 C 0.48 4.54 7.55 -11.75 -0.09 4.45 16
8 O -0.50 -5.33 13.32 5.48 0.07 -5.25 16
9 N -0.69 -6.05 4.33 -53.57 -0.23 -6.28 16
10 C 0.12 0.93 4.00 -67.12 -0.27 0.66 16
11 H 0.10 0.76 8.05 -51.92 -0.42 0.34 16
12 C -0.15 -1.25 7.62 -25.92 -0.20 -1.44 16
13 C 0.12 1.29 4.28 -67.12 -0.29 1.00 16
14 H 0.11 1.30 7.54 -51.93 -0.39 0.91 16
15 N -0.72 -9.24 4.96 -53.02 -0.26 -9.50 16
16 C 0.53 9.62 7.85 -10.98 -0.09 9.54 16
17 O -0.51 -11.14 15.50 5.56 0.09 -11.05 16
18 C -0.13 -2.67 6.16 36.01 0.22 -2.45 16
19 S -0.11 -3.04 19.60 -107.50 -2.11 -5.15 16
20 C -0.61 -17.54 9.50 30.94 0.29 -17.24 16
21 H 0.07 1.84 7.80 -52.49 -0.41 1.44 16
22 C 0.04 1.03 5.49 -17.43 -0.10 0.94 16
23 N -0.88 -27.54 13.67 55.49 0.76 -26.78 16
24 Si 1.09 25.07 29.92 -169.99 -5.09 19.99 16
25 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16
26 H -0.29 -6.23 7.11 56.52 0.40 -5.83 16
27 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16
28 C -0.16 -1.30 7.57 -25.92 -0.20 -1.50 16
29 H 0.06 0.51 8.10 -51.93 -0.42 0.09 16
30 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16
31 H 0.06 0.47 8.10 -51.93 -0.42 0.05 16
32 H 0.08 0.63 6.43 -51.93 -0.33 0.30 16
33 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16
34 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16
35 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16
36 H 0.07 0.36 8.14 -51.92 -0.42 -0.06 16
37 H 0.08 0.60 6.43 -51.93 -0.33 0.27 16
38 H 0.41 3.64 7.29 -40.82 -0.30 3.34 16
39 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16
40 H 0.11 0.69 8.14 -51.93 -0.42 0.27 16
41 H 0.40 4.35 7.19 -40.82 -0.29 4.05 16
42 H 0.09 1.75 8.14 -51.92 -0.42 1.33 16
43 H 0.09 1.74 8.14 -51.92 -0.42 1.32 16
44 H 0.28 8.82 7.12 -40.82 -0.29 8.53 16
45 H 0.11 0.72 8.14 -51.93 -0.42 0.30 16
46 H 0.08 0.77 8.13 -51.93 -0.42 0.35 16
LS Contribution 393.44 15.07 5.93 5.93
Total: -1.00 -35.19 393.44 -7.90 -43.08
By element:
Atomic # 1 Polarization: 12.34 SS G_CDS: -7.05 Total: 5.28 kcal
Atomic # 6 Polarization: -5.64 SS G_CDS: -0.10 Total: -5.74 kcal
Atomic # 7 Polarization: -42.82 SS G_CDS: 0.26 Total: -42.56 kcal
Atomic # 8 Polarization: -21.09 SS G_CDS: 0.26 Total: -20.84 kcal
Atomic # 14 Polarization: 25.07 SS G_CDS: -5.09 Total: 19.99 kcal
Atomic # 16 Polarization: -3.04 SS G_CDS: -2.11 Total: -5.15 kcal
Total LS contribution 5.93 Total: 5.93 kcal
Total: -35.19 -7.90 -43.08 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001703926605.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -52.105 kcal
(2) G-P(sol) polarization free energy of solvation -35.186 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.291 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.897 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.084 kcal
(6) G-S(sol) free energy of system = (1) + (5) -95.189 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.61 seconds