Wall clock time and date at job start Sat Apr 11 2020 06:33:49
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52996 * 1
3 3 C 1.52999 * 109.47238 * 2 1
4 4 C 1.53002 * 109.47273 * 240.00234 * 2 1 3
5 5 C 1.50696 * 109.47061 * 120.00298 * 2 1 3
6 6 O 1.20779 * 120.00209 * 0.02562 * 5 2 1
7 7 C 1.49090 * 119.99912 * 179.97438 * 5 2 1
8 8 O 1.21365 * 120.00148 * 0.02562 * 7 5 2
9 9 N 1.34783 * 120.00005 * 180.02562 * 7 5 2
10 10 C 1.46494 * 120.00079 * 180.02562 * 9 7 5
11 11 H 1.09011 * 112.84816 * 313.96998 * 10 9 7
12 12 C 1.53777 * 113.62056 * 85.16743 * 10 9 7
13 13 C 1.53783 * 87.08115 * 89.11531 * 12 10 9
14 14 H 1.08995 * 113.61348 * 140.06613 * 13 12 10
15 15 N 1.46498 * 113.61604 * 270.88732 * 13 12 10
16 16 C 1.34778 * 119.99856 * 201.85367 * 15 13 12
17 17 O 1.21278 * 120.00354 * 0.02562 * 16 15 13
18 18 C 1.50703 * 119.99713 * 179.97438 * 16 15 13
19 19 S 1.80998 * 109.47043 * 180.02562 * 18 16 15
20 20 C 1.76199 * 100.00187 * 180.02562 * 19 18 16
21 21 H 1.07998 * 119.99545 * 359.97438 * 20 19 18
22 22 C 1.38796 * 120.00080 * 179.97438 * 20 19 18
23 23 N 1.31632 * 119.99976 * 0.02562 * 22 20 19
24 24 Si 1.86802 * 119.99866 * 179.97438 * 22 20 19
25 25 H 1.48493 * 109.46944 * 269.99598 * 24 22 20
26 26 H 1.48493 * 109.47041 * 30.00315 * 24 22 20
27 27 H 1.48505 * 109.46657 * 150.00083 * 24 22 20
28 28 C 1.53778 * 87.07937 * 25.43404 * 13 12 10
29 29 H 1.09003 * 109.47153 * 299.99926 * 1 2 3
30 30 H 1.09000 * 109.47029 * 59.99537 * 1 2 3
31 31 H 1.08998 * 109.47266 * 179.97438 * 1 2 3
32 32 H 1.09005 * 109.47178 * 179.97438 * 3 2 1
33 33 H 1.09000 * 109.47489 * 300.00182 * 3 2 1
34 34 H 1.09003 * 109.46891 * 60.00755 * 3 2 1
35 35 H 1.08999 * 109.46988 * 300.00815 * 4 2 1
36 36 H 1.09008 * 109.47384 * 59.99784 * 4 2 1
37 37 H 1.08991 * 109.47504 * 180.02562 * 4 2 1
38 38 H 0.96999 * 119.99339 * 359.97438 * 9 7 5
39 39 H 1.08999 * 113.61489 * 334.56948 * 12 10 9
40 40 H 1.08996 * 113.69451 * 203.67827 * 12 10 9
41 41 H 0.97003 * 120.00133 * 21.85296 * 15 13 12
42 42 H 1.08996 * 109.46832 * 60.00211 * 18 16 15
43 43 H 1.08997 * 109.47037 * 300.00357 * 18 16 15
44 44 H 0.97002 * 119.99916 * 359.97438 * 23 22 20
45 45 H 1.09005 * 113.61676 * 89.11683 * 28 13 12
46 46 H 1.09007 * 113.61758 * 220.01556 * 28 13 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 6 2.0400 -0.7212 -1.2493
5 6 2.0323 -0.7105 1.2304
6 8 1.2474 -1.1699 2.0252
7 6 3.4981 -0.8472 1.4660
8 8 4.2867 -0.3859 0.6672
9 7 3.9473 -1.4831 2.5662
10 6 5.3876 -1.6169 2.7981
11 1 5.9313 -1.9384 1.9096
12 6 6.0150 -0.3993 3.4971
13 6 5.6822 -1.0916 4.8293
14 1 6.4637 -0.9886 5.5821
15 7 4.3501 -0.7647 5.3439
16 6 4.0788 -0.9148 6.6556
17 8 4.9376 -1.3201 7.4099
18 6 2.7087 -0.5779 7.1850
19 16 2.6595 -0.8820 8.9686
20 6 0.9943 -0.4196 9.3120
21 1 0.3541 -0.0747 8.5136
22 6 0.5055 -0.4987 10.6086
23 7 1.2860 -0.9186 11.5818
24 14 -1.2597 -0.0078 10.9728
25 1 -1.3126 1.4383 11.3061
26 1 -2.1032 -0.2721 9.7796
27 1 -1.7665 -0.7995 12.1225
28 6 5.7360 -2.4225 4.0608
29 1 -0.3633 0.5138 0.8900
30 1 -0.3633 0.5139 -0.8899
31 1 -0.3634 -1.0276 -0.0005
32 1 3.1300 1.4425 0.0005
33 1 1.6767 1.9564 -0.8899
34 1 1.6767 1.9563 0.8901
35 1 1.6766 -1.7488 -1.2494
36 1 1.6766 -0.2074 -2.1393
37 1 3.1299 -0.7216 -1.2491
38 1 3.3169 -1.8514 3.2048
39 1 5.4643 0.5276 3.3373
40 1 7.0844 -0.2929 3.3155
41 1 3.6633 -0.4402 4.7407
42 1 1.9644 -1.2009 6.6892
43 1 2.4918 0.4723 6.9897
44 1 2.2027 -1.1731 11.3927
45 1 6.7293 -2.8706 4.0326
46 1 4.9602 -3.1290 4.3560
RHF calculation, no. of doubly occupied orbitals= 62
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001703926605.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:33:49
Heat of formation + Delta-G solvation = -119.504041 kcal
Electronic energy + Delta-G solvation = -27761.166163 eV
Core-core repulsion = 23776.797024 eV
Total energy + Delta-G solvation = -3984.369139 eV
No. of doubly occupied orbitals = 62
Molecular weight
(most abundant/longest-lived isotopes) = 342.145 amu
Computer time = 0.64 seconds
Orbital eigenvalues (eV)
-42.28148 -41.31991 -40.00896 -38.96275 -36.95966 -34.96312 -34.76576 -33.87462
-30.86232 -28.52124 -28.25963 -27.37795 -27.09189 -26.85183 -25.19992 -22.89929
-21.80503 -21.02361 -20.41143 -20.06862 -18.68884 -18.18196 -17.51045 -17.45550
-16.98977 -16.65970 -16.59807 -16.28406 -16.01717 -15.80117 -15.68388 -15.29091
-14.97970 -14.67797 -14.51591 -14.20136 -14.11406 -13.94852 -13.57284 -13.43373
-13.40547 -13.11090 -13.09249 -13.02172 -12.76689 -12.62045 -12.58244 -12.14415
-11.96411 -11.96089 -11.77809 -11.62393 -11.48788 -11.13090 -11.12417 -10.44602
-10.38784 -10.36210 -10.15360 -8.94821 -8.89453 -6.30048 -0.18545 1.13546
1.41012 1.49679 1.53348 1.59733 1.78277 1.80374 2.08574 2.31850
2.94745 3.00126 3.10001 3.28072 3.44114 3.49349 3.68655 3.80147
3.81606 3.85694 4.03404 4.09939 4.25034 4.31126 4.53641 4.65023
4.69085 4.70605 4.70871 4.76490 4.83506 4.90379 4.90959 4.91116
4.91742 4.98819 5.10763 5.19264 5.30702 5.31857 5.50467 5.62201
5.71228 6.13254 6.17118 6.27820 6.75932 7.03141 7.04991 8.48866
Molecular weight = 342.14amu
Principal moments of inertia in cm(-1)
A = 0.010921 B = 0.002811 C = 0.002313
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2563.181325 B = 9956.748973 C =12102.743295
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.136 4.136
2 C -0.095 4.095
3 C -0.141 4.141
4 C -0.139 4.139
5 C 0.357 3.643
6 O -0.434 6.434
7 C 0.479 3.521
8 O -0.509 6.509
9 N -0.693 5.693
10 C 0.120 3.880
11 H 0.114 0.886
12 C -0.138 4.138
13 C 0.103 3.897
14 H 0.092 0.908
15 N -0.699 5.699
16 C 0.539 3.461
17 O -0.555 6.555
18 C -0.114 4.114
19 S -0.187 6.187
20 C -0.615 4.615
21 H 0.073 0.927
22 C -0.018 4.018
23 N -0.912 5.912
24 Si 1.138 2.862
25 H -0.267 1.267
26 H -0.264 1.264
27 H -0.278 1.278
28 C -0.144 4.144
29 H 0.053 0.947
30 H 0.088 0.912
31 H 0.056 0.944
32 H 0.069 0.931
33 H 0.089 0.911
34 H 0.054 0.946
35 H 0.056 0.944
36 H 0.089 0.911
37 H 0.069 0.931
38 H 0.410 0.590
39 H 0.071 0.929
40 H 0.133 0.867
41 H 0.406 0.594
42 H 0.109 0.891
43 H 0.108 0.892
44 H 0.261 0.739
45 H 0.134 0.866
46 H 0.070 0.930
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 4.223 1.800 -30.898 31.237
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.194 4.194
2 C -0.096 4.096
3 C -0.198 4.198
4 C -0.197 4.197
5 C 0.228 3.772
6 O -0.304 6.304
7 C 0.262 3.738
8 O -0.385 6.385
9 N -0.347 5.347
10 C 0.016 3.984
11 H 0.131 0.869
12 C -0.177 4.177
13 C -0.002 4.002
14 H 0.110 0.890
15 N -0.352 5.352
16 C 0.324 3.676
17 O -0.432 6.432
18 C -0.266 4.266
19 S 0.040 5.960
20 C -0.763 4.763
21 H 0.091 0.909
22 C -0.221 4.221
23 N -0.548 5.548
24 Si 0.956 3.044
25 H -0.192 1.192
26 H -0.188 1.188
27 H -0.203 1.203
28 C -0.183 4.183
29 H 0.072 0.928
30 H 0.107 0.893
31 H 0.075 0.925
32 H 0.088 0.912
33 H 0.108 0.892
34 H 0.073 0.927
35 H 0.075 0.925
36 H 0.108 0.892
37 H 0.088 0.912
38 H 0.247 0.753
39 H 0.090 0.910
40 H 0.151 0.849
41 H 0.243 0.757
42 H 0.128 0.872
43 H 0.126 0.874
44 H 0.072 0.928
45 H 0.152 0.848
46 H 0.089 0.911
Dipole moment (debyes) X Y Z Total
from point charges 4.716 1.326 -28.602 29.018
hybrid contribution -0.368 0.150 -1.459 1.512
sum 4.347 1.477 -30.061 30.409
Atomic orbital electron populations
1.21805 0.91558 1.02736 1.03270 1.21046 0.97833 0.97662 0.93072
1.21909 1.02437 0.91975 1.03528 1.21895 1.02411 0.99959 0.95398
1.25343 0.88169 0.76229 0.87497 1.90466 1.58914 1.36637 1.44368
1.21043 0.91016 0.79586 0.82137 1.90719 1.57146 1.46063 1.44565
1.45965 1.08665 1.56213 1.23864 1.22106 0.79907 0.97339 0.99075
0.86859 1.23732 1.03991 0.97646 0.92286 1.22161 0.84489 0.97164
0.96384 0.89012 1.45577 1.14702 1.67747 1.07224 1.19949 0.88475
0.76542 0.82611 1.90695 1.48704 1.46058 1.57772 1.23252 0.97983
1.06170 0.99178 1.84987 1.18819 1.87927 1.04274 1.24055 0.97171
1.54829 1.00196 0.90892 1.27813 1.10156 0.93073 0.91083 1.70894
1.08554 1.40488 1.34834 0.82695 0.67862 0.77253 0.76616 1.19233
1.18831 1.20315 1.23777 1.04905 0.96376 0.93256 0.92805 0.89316
0.92515 0.91182 0.89204 0.92730 0.92469 0.89217 0.91211 0.75324
0.91035 0.84918 0.75700 0.87246 0.87398 0.92779 0.84821 0.91081
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.74 7.76 71.98 0.56 -1.18 16
2 C -0.09 -1.28 0.76 -52.93 -0.04 -1.32 16
3 C -0.14 -1.71 8.29 71.98 0.60 -1.11 16
4 C -0.14 -1.55 8.29 71.98 0.60 -0.96 16
5 C 0.36 6.32 6.03 28.60 0.17 6.49 16
6 O -0.43 -9.52 16.09 -1.51 -0.02 -9.55 16
7 C 0.48 8.39 7.55 87.16 0.66 9.05 16
8 O -0.51 -9.99 13.32 -3.29 -0.04 -10.03 16
9 N -0.69 -10.92 4.33 -441.75 -1.91 -12.84 16
10 C 0.12 1.62 4.00 45.52 0.18 1.80 16
11 H 0.11 1.35 8.05 -2.38 -0.02 1.33 16
12 C -0.14 -1.90 7.62 31.12 0.24 -1.67 16
13 C 0.10 2.04 4.28 45.52 0.19 2.23 16
14 H 0.09 2.17 7.54 -2.39 -0.02 2.15 16
15 N -0.70 -17.11 4.96 -440.05 -2.18 -19.29 16
16 C 0.54 19.33 7.85 87.66 0.69 20.02 16
17 O -0.55 -24.63 15.50 -3.02 -0.05 -24.68 16
18 C -0.11 -4.56 6.16 71.24 0.44 -4.12 16
19 S -0.19 -10.27 19.60 -56.49 -1.11 -11.38 16
20 C -0.61 -35.70 9.50 67.95 0.65 -35.05 16
21 H 0.07 4.00 7.80 -2.91 -0.02 3.98 16
22 C -0.02 -1.05 5.49 84.86 0.47 -0.58 16
23 N -0.91 -58.08 13.67 21.65 0.30 -57.78 16
24 Si 1.14 49.71 29.92 68.60 2.05 51.76 16
25 H -0.27 -10.88 7.11 99.48 0.71 -10.18 16
26 H -0.26 -10.45 7.11 99.48 0.71 -9.74 16
27 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16
28 C -0.14 -2.12 7.57 31.12 0.24 -1.89 16
29 H 0.05 0.80 8.10 -2.39 -0.02 0.78 16
30 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16
31 H 0.06 0.79 8.10 -2.39 -0.02 0.77 16
32 H 0.07 1.00 6.43 -2.38 -0.02 0.99 16
33 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16
34 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16
35 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16
36 H 0.09 0.67 8.14 -2.38 -0.02 0.65 16
37 H 0.07 0.94 6.43 -2.39 -0.02 0.92 16
38 H 0.41 6.71 7.29 -92.71 -0.68 6.03 16
39 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16
40 H 0.13 1.25 8.14 -2.39 -0.02 1.23 16
41 H 0.41 8.30 7.19 -92.71 -0.67 7.64 16
42 H 0.11 4.00 8.14 -2.40 -0.02 3.98 16
43 H 0.11 3.96 8.14 -2.40 -0.02 3.94 16
44 H 0.26 17.25 7.12 -92.71 -0.66 16.59 16
45 H 0.13 1.38 8.14 -2.38 -0.02 1.36 16
46 H 0.07 1.24 8.13 -2.38 -0.02 1.22 16
Total: -1.00 -78.27 393.44 2.44 -75.83
By element:
Atomic # 1 Polarization: 26.47 SS G_CDS: -0.22 Total: 26.24 kcal
Atomic # 6 Polarization: -13.92 SS G_CDS: 5.63 Total: -8.29 kcal
Atomic # 7 Polarization: -86.11 SS G_CDS: -3.80 Total: -89.91 kcal
Atomic # 8 Polarization: -44.14 SS G_CDS: -0.11 Total: -44.25 kcal
Atomic # 14 Polarization: 49.71 SS G_CDS: 2.05 Total: 51.76 kcal
Atomic # 16 Polarization: -10.27 SS G_CDS: -1.11 Total: -11.38 kcal
Total: -78.27 2.44 -75.83 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001703926605.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -43.674 kcal
(2) G-P(sol) polarization free energy of solvation -78.266 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.940 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.436 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.830 kcal
(6) G-S(sol) free energy of system = (1) + (5) -119.504 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.64 seconds