Wall clock time and date at job start Sat Apr 11 2020 06:32:52
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 H 1.09002 * 109.87111 * 2 1
4 4 C 1.54102 * 109.88180 * 238.98854 * 2 1 3
5 5 C 1.54804 * 104.30816 * 238.32838 * 4 2 1
6 6 H 1.09006 * 110.90744 * 97.38085 * 5 4 2
7 7 C 1.50697 * 110.91042 * 220.98643 * 5 4 2
8 8 O 1.21276 * 119.99974 * 7.93864 * 7 5 4
9 9 N 1.34784 * 119.99890 * 187.93584 * 7 5 4
10 10 C 1.46497 * 119.99730 * 183.63502 * 9 7 5
11 11 C 1.46497 * 120.00067 * 3.63516 * 9 7 5
12 12 C 1.53950 * 113.73910 * 211.32976 * 11 9 7
13 13 N 1.47581 * 86.11245 * 222.04780 * 12 11 9
14 14 C 1.34780 * 134.48980 * 204.64387 * 13 12 11
15 15 O 1.21285 * 119.99883 * 180.02562 * 14 13 12
16 16 C 1.50699 * 119.99961 * 359.97438 * 14 13 12
17 17 S 1.81005 * 109.47073 * 180.02562 * 16 14 13
18 18 C 1.76203 * 99.99945 * 180.02562 * 17 16 14
19 19 H 1.07998 * 120.00057 * 0.02562 * 18 17 16
20 20 C 1.38798 * 119.99867 * 179.97438 * 18 17 16
21 21 N 1.31635 * 120.00135 * 0.02562 * 20 18 17
22 22 Si 1.86797 * 119.99966 * 180.02562 * 20 18 17
23 23 H 1.48498 * 109.47503 * 90.00041 * 22 20 18
24 24 H 1.48507 * 109.47015 * 210.00241 * 22 20 18
25 25 H 1.48502 * 109.46828 * 329.99465 * 22 20 18
26 26 C 1.47579 * 91.01557 * 24.63978 * 13 12 11
27 27 C 1.55224 * 101.98837 * 339.26285 * 5 4 2
28 28 O 1.43750 * 110.00236 * 121.08210 * 2 1 3
29 29 H 1.09002 * 109.47058 * 181.00393 * 1 2 3
30 30 H 1.08996 * 109.47404 * 301.01099 * 1 2 3
31 31 H 1.09003 * 109.46980 * 61.01474 * 1 2 3
32 32 H 1.09004 * 110.48654 * 357.07431 * 4 2 1
33 33 H 1.09003 * 110.48974 * 119.58871 * 4 2 1
34 34 H 1.08997 * 109.47252 * 93.10944 * 10 9 7
35 35 H 1.09002 * 109.47390 * 213.11003 * 10 9 7
36 36 H 1.09007 * 109.47305 * 333.11331 * 10 9 7
37 37 H 1.09006 * 112.94407 * 343.05624 * 11 9 7
38 38 H 1.08997 * 113.76659 * 336.34383 * 12 11 9
39 39 H 1.09003 * 113.76810 * 107.74725 * 12 11 9
40 40 H 1.09000 * 109.47459 * 300.00602 * 16 14 13
41 41 H 1.08996 * 109.46989 * 60.00524 * 16 14 13
42 42 H 0.96998 * 119.99619 * 180.02562 * 21 20 18
43 43 H 1.09008 * 113.76539 * 221.05580 * 26 13 12
44 44 H 1.09000 * 113.76630 * 89.66459 * 26 13 12
45 45 H 1.09004 * 110.52094 * 278.38583 * 27 5 4
46 46 H 1.09002 * 110.64605 * 155.43304 * 27 5 4
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.9005 1.0251 0.0000
4 6 2.0540 -0.7466 -1.2420
5 6 2.9248 -1.8881 -0.6631
6 1 2.3625 -2.8208 -0.6162
7 6 4.1868 -2.0631 -1.4679
8 8 4.4689 -1.2632 -2.3347
9 7 5.0019 -3.1085 -1.2243
10 6 6.2676 -3.2352 -1.9511
11 6 4.6223 -4.1179 -0.2329
12 6 5.8212 -4.7582 0.4901
13 7 5.1046 -6.0386 0.3314
14 6 5.1176 -7.2159 0.9875
15 8 4.3988 -8.1218 0.6218
16 6 6.0260 -7.4069 2.1746
17 16 5.8153 -9.0799 2.8325
18 6 6.9600 -9.0287 4.1711
19 1 7.5282 -8.1302 4.3617
20 6 7.1307 -10.1427 4.9812
21 7 6.4378 -11.2377 4.7493
22 14 8.3437 -10.0882 6.4008
23 1 7.6516 -9.6121 7.6253
24 1 8.8896 -11.4488 6.6379
25 1 9.4543 -9.1605 6.0674
26 6 4.3680 -5.5121 -0.8340
27 6 3.2418 -1.3608 0.7620
28 8 2.0217 -0.6974 1.1568
29 1 -0.3633 -1.0275 0.0180
30 1 -0.3634 0.5294 0.8807
31 1 -0.3633 0.4980 -0.8990
32 1 1.2248 -1.1548 -1.8199
33 1 2.6579 -0.0822 -1.8601
34 1 7.0670 -2.7733 -1.3718
35 1 6.4938 -4.2903 -2.1057
36 1 6.1837 -2.7363 -2.9167
37 1 3.8331 -3.7787 0.4382
38 1 6.7533 -4.7039 -0.0723
39 1 5.9294 -4.4409 1.5272
40 1 7.0618 -7.2659 1.8660
41 1 5.7743 -6.6786 2.9456
42 1 6.5569 -12.0160 5.3157
43 1 3.3159 -5.7967 -0.8540
44 1 4.8733 -5.6793 -1.7852
45 1 4.0708 -0.6537 0.7322
46 1 3.4649 -2.1873 1.4368
RHF calculation, no. of doubly occupied orbitals= 62
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001747958529.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:32:52
Heat of formation + Delta-G solvation = -71.290640 kcal
Electronic energy + Delta-G solvation = -27512.232069 eV
Core-core repulsion = 23529.953620 eV
Total energy + Delta-G solvation = -3982.278449 eV
No. of doubly occupied orbitals = 62
Molecular weight
(most abundant/longest-lived isotopes) = 342.145 amu
Computer time = 0.84 seconds
Orbital eigenvalues (eV)
-41.36791 -40.15772 -38.96350 -37.71606 -34.92074 -32.88010 -32.47447 -32.26739
-30.46763 -28.23265 -27.66983 -26.45896 -26.16101 -25.49039 -23.63441 -22.27151
-21.49049 -19.44416 -19.20437 -18.33204 -17.78596 -17.04382 -16.58279 -16.25943
-16.07794 -15.91355 -15.75367 -15.18477 -14.92414 -14.84316 -14.24886 -14.03581
-13.96169 -13.66559 -13.23725 -13.14897 -13.02459 -12.93475 -12.78403 -12.63683
-12.49751 -12.41942 -12.33478 -11.89390 -11.77557 -11.62168 -11.33343 -11.18602
-11.10020 -11.06746 -10.80738 -10.30989 -10.15265 -9.87613 -9.53956 -9.19640
-9.11084 -8.77830 -8.30461 -6.56478 -6.26168 -3.97712 2.04047 2.22905
2.68168 2.96306 3.19314 3.20086 3.26841 3.35849 3.47778 3.83863
3.87853 4.08675 4.15168 4.22835 4.30177 4.40668 4.49825 4.63966
4.70122 4.76495 4.89077 4.96800 5.08389 5.09186 5.11683 5.12232
5.13395 5.17190 5.26787 5.33049 5.43053 5.45478 5.46696 5.53567
5.56084 5.60781 5.77578 5.80640 5.81155 5.93423 6.05659 6.42780
6.79059 7.54986 7.62285 7.62849 8.30541 8.39774 9.19132 10.81244
Molecular weight = 342.14amu
Principal moments of inertia in cm(-1)
A = 0.016255 B = 0.002164 C = 0.002068
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1722.159334 B =12937.925277 C =13536.883766
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.152 4.152
2 C 0.071 3.929
3 H 0.071 0.929
4 C -0.139 4.139
5 C -0.151 4.151
6 H 0.112 0.888
7 C 0.530 3.470
8 O -0.531 6.531
9 N -0.603 5.603
10 C 0.077 3.923
11 C 0.096 3.904
12 C 0.096 3.904
13 N -0.649 5.649
14 C 0.560 3.440
15 O -0.509 6.509
16 C -0.146 4.146
17 S -0.060 6.060
18 C -0.536 4.536
19 H 0.073 0.927
20 C 0.074 3.926
21 N -0.867 5.867
22 Si 0.920 3.080
23 H -0.276 1.276
24 H -0.282 1.282
25 H -0.272 1.272
26 C 0.096 3.904
27 C 0.063 3.937
28 O -0.367 6.367
29 H 0.064 0.936
30 H 0.063 0.937
31 H 0.070 0.930
32 H 0.084 0.916
33 H 0.096 0.904
34 H 0.061 0.939
35 H 0.074 0.926
36 H 0.082 0.918
37 H 0.129 0.871
38 H 0.092 0.908
39 H 0.093 0.907
40 H 0.089 0.911
41 H 0.090 0.910
42 H 0.269 0.731
43 H 0.088 0.912
44 H 0.086 0.914
45 H 0.067 0.933
46 H 0.102 0.898
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.780 23.574 -12.505 27.304
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.209 4.209
2 C 0.014 3.986
3 H 0.089 0.911
4 C -0.177 4.177
5 C -0.172 4.172
6 H 0.130 0.870
7 C 0.318 3.682
8 O -0.407 6.407
9 N -0.336 5.336
10 C -0.065 4.065
11 C -0.009 4.009
12 C -0.028 4.028
13 N -0.389 5.389
14 C 0.350 3.650
15 O -0.382 6.382
16 C -0.296 4.296
17 S 0.167 5.833
18 C -0.684 4.684
19 H 0.091 0.909
20 C -0.136 4.136
21 N -0.502 5.502
22 Si 0.746 3.254
23 H -0.202 1.202
24 H -0.207 1.207
25 H -0.197 1.197
26 C -0.028 4.028
27 C -0.015 4.015
28 O -0.286 6.286
29 H 0.083 0.917
30 H 0.082 0.918
31 H 0.089 0.911
32 H 0.102 0.898
33 H 0.115 0.885
34 H 0.080 0.920
35 H 0.092 0.908
36 H 0.101 0.899
37 H 0.146 0.854
38 H 0.110 0.890
39 H 0.111 0.889
40 H 0.107 0.893
41 H 0.108 0.892
42 H 0.079 0.921
43 H 0.107 0.893
44 H 0.104 0.896
45 H 0.086 0.914
46 H 0.120 0.880
Dipole moment (debyes) X Y Z Total
from point charges -6.825 22.242 -13.146 26.723
hybrid contribution 1.849 0.864 1.133 2.335
sum -4.976 23.107 -12.013 26.514
Atomic orbital electron populations
1.21946 0.93394 1.03067 1.02531 1.22796 0.95405 0.95961 0.84471
0.91100 1.23007 0.99665 0.96694 0.98330 1.22980 0.95220 1.02162
0.96850 0.86975 1.20242 0.84377 0.80316 0.83310 1.90695 1.74325
1.42956 1.32726 1.47783 1.21268 1.24077 1.40472 1.21748 0.84318
1.02661 0.97754 1.23516 0.99131 0.87288 0.90997 1.23547 0.95928
0.81165 1.02203 1.49762 1.44354 1.12913 1.31873 1.20052 0.82626
0.79118 0.83235 1.90733 1.41403 1.39157 1.66904 1.23484 1.00797
1.07945 0.97377 1.85434 1.56146 1.05372 1.36372 1.22840 1.27135
1.02368 1.16031 0.90893 1.25001 0.96357 0.94510 0.97718 1.70016
1.39202 1.02790 1.38204 0.86155 0.80384 0.77659 0.81226 1.20217
1.20724 1.19689 1.23528 0.99182 0.89284 0.90842 1.23534 0.88516
0.96934 0.92478 1.88940 1.38969 1.67557 1.33088 0.91686 0.91770
0.91121 0.89757 0.88504 0.92029 0.90767 0.89883 0.85378 0.88980
0.88857 0.89251 0.89168 0.92122 0.89315 0.89571 0.91437 0.88018
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -0.91 9.37 37.16 0.35 -0.57 16
2 C 0.07 0.52 4.05 -26.16 -0.11 0.41 16
3 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16
4 C -0.14 -0.98 6.11 -25.21 -0.15 -1.14 16
5 C -0.15 -1.07 2.46 -89.64 -0.22 -1.29 16
6 H 0.11 0.68 7.39 -51.93 -0.38 0.30 16
7 C 0.53 4.62 6.99 -10.98 -0.08 4.54 16
8 O -0.53 -6.30 14.96 5.56 0.08 -6.22 16
9 N -0.60 -4.37 3.08 -175.75 -0.54 -4.91 16
10 C 0.08 0.50 9.08 59.85 0.54 1.04 16
11 C 0.10 0.68 4.01 -70.16 -0.28 0.39 16
12 C 0.10 0.78 7.99 -2.97 -0.02 0.76 16
13 N -0.65 -8.15 3.61 -178.56 -0.64 -8.79 16
14 C 0.56 10.18 8.07 -10.98 -0.09 10.09 16
15 O -0.51 -11.42 16.59 5.55 0.09 -11.32 16
16 C -0.15 -2.84 5.91 36.01 0.21 -2.63 16
17 S -0.06 -1.59 20.57 -107.50 -2.21 -3.81 16
18 C -0.54 -14.95 9.50 30.94 0.29 -14.66 16
19 H 0.07 1.92 7.80 -52.49 -0.41 1.51 16
20 C 0.07 2.07 5.49 -17.43 -0.10 1.97 16
21 N -0.87 -25.80 13.22 55.49 0.73 -25.07 16
22 Si 0.92 21.06 29.55 -169.99 -5.02 16.03 16
23 H -0.28 -6.21 7.11 56.52 0.40 -5.80 16
24 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16
25 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16
26 C 0.10 0.91 8.39 -2.98 -0.03 0.88 16
27 C 0.06 0.45 6.78 38.34 0.26 0.71 16
28 O -0.37 -3.35 11.19 -35.23 -0.39 -3.75 16
29 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16
30 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16
31 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16
32 H 0.08 0.52 7.70 -51.93 -0.40 0.12 16
33 H 0.10 0.80 6.78 -51.93 -0.35 0.45 16
34 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16
35 H 0.07 0.41 6.55 -51.93 -0.34 0.07 16
36 H 0.08 0.62 7.29 -51.92 -0.38 0.24 16
37 H 0.13 0.78 4.84 -51.93 -0.25 0.53 16
38 H 0.09 0.63 6.50 -51.93 -0.34 0.30 16
39 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16
40 H 0.09 1.62 8.14 -51.92 -0.42 1.20 16
41 H 0.09 1.61 8.14 -51.92 -0.42 1.19 16
42 H 0.27 7.43 8.31 -40.82 -0.34 7.10 16
43 H 0.09 0.86 8.14 -51.92 -0.42 0.43 16
44 H 0.09 0.75 7.31 -51.93 -0.38 0.37 16
45 H 0.07 0.48 8.04 -51.93 -0.42 0.07 16
46 H 0.10 0.60 6.81 -51.93 -0.35 0.25 16
LS Contribution 386.89 15.07 5.83 5.83
Total: -1.00 -36.28 386.89 -8.43 -44.71
By element:
Atomic # 1 Polarization: 3.74 SS G_CDS: -6.94 Total: -3.20 kcal
Atomic # 6 Polarization: -0.08 SS G_CDS: 0.59 Total: 0.51 kcal
Atomic # 7 Polarization: -38.33 SS G_CDS: -0.45 Total: -38.78 kcal
Atomic # 8 Polarization: -21.07 SS G_CDS: -0.22 Total: -21.29 kcal
Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.03 kcal
Atomic # 16 Polarization: -1.59 SS G_CDS: -2.21 Total: -3.81 kcal
Total LS contribution 5.83 Total: 5.83 kcal
Total: -36.28 -8.43 -44.71 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001747958529.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -26.583 kcal
(2) G-P(sol) polarization free energy of solvation -36.275 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.858 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.432 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.707 kcal
(6) G-S(sol) free energy of system = (1) + (5) -71.291 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.84 seconds