Wall clock time and date at job start Sat Apr 11 2020 06:32:51
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 H 1.09002 * 109.87111 * 2 1
4 4 C 1.54102 * 109.88180 * 238.98854 * 2 1 3
5 5 C 1.54804 * 104.30816 * 238.32838 * 4 2 1
6 6 H 1.09006 * 110.90744 * 97.38085 * 5 4 2
7 7 C 1.50697 * 110.91042 * 220.98643 * 5 4 2
8 8 O 1.21276 * 119.99974 * 7.93864 * 7 5 4
9 9 N 1.34784 * 119.99890 * 187.93584 * 7 5 4
10 10 C 1.46497 * 119.99730 * 183.63502 * 9 7 5
11 11 C 1.46497 * 120.00067 * 3.63516 * 9 7 5
12 12 C 1.53950 * 113.73910 * 211.32976 * 11 9 7
13 13 N 1.47581 * 86.11245 * 222.04780 * 12 11 9
14 14 C 1.34780 * 134.48980 * 204.64387 * 13 12 11
15 15 O 1.21285 * 119.99883 * 180.02562 * 14 13 12
16 16 C 1.50699 * 119.99961 * 359.97438 * 14 13 12
17 17 S 1.81005 * 109.47073 * 180.02562 * 16 14 13
18 18 C 1.76203 * 99.99945 * 180.02562 * 17 16 14
19 19 H 1.07998 * 120.00057 * 0.02562 * 18 17 16
20 20 C 1.38798 * 119.99867 * 179.97438 * 18 17 16
21 21 N 1.31635 * 120.00135 * 0.02562 * 20 18 17
22 22 Si 1.86797 * 119.99966 * 180.02562 * 20 18 17
23 23 H 1.48498 * 109.47503 * 90.00041 * 22 20 18
24 24 H 1.48507 * 109.47015 * 210.00241 * 22 20 18
25 25 H 1.48502 * 109.46828 * 329.99465 * 22 20 18
26 26 C 1.47579 * 91.01557 * 24.63978 * 13 12 11
27 27 C 1.55224 * 101.98837 * 339.26285 * 5 4 2
28 28 O 1.43750 * 110.00236 * 121.08210 * 2 1 3
29 29 H 1.09002 * 109.47058 * 181.00393 * 1 2 3
30 30 H 1.08996 * 109.47404 * 301.01099 * 1 2 3
31 31 H 1.09003 * 109.46980 * 61.01474 * 1 2 3
32 32 H 1.09004 * 110.48654 * 357.07431 * 4 2 1
33 33 H 1.09003 * 110.48974 * 119.58871 * 4 2 1
34 34 H 1.08997 * 109.47252 * 93.10944 * 10 9 7
35 35 H 1.09002 * 109.47390 * 213.11003 * 10 9 7
36 36 H 1.09007 * 109.47305 * 333.11331 * 10 9 7
37 37 H 1.09006 * 112.94407 * 343.05624 * 11 9 7
38 38 H 1.08997 * 113.76659 * 336.34383 * 12 11 9
39 39 H 1.09003 * 113.76810 * 107.74725 * 12 11 9
40 40 H 1.09000 * 109.47459 * 300.00602 * 16 14 13
41 41 H 1.08996 * 109.46989 * 60.00524 * 16 14 13
42 42 H 0.96998 * 119.99619 * 180.02562 * 21 20 18
43 43 H 1.09008 * 113.76539 * 221.05580 * 26 13 12
44 44 H 1.09000 * 113.76630 * 89.66459 * 26 13 12
45 45 H 1.09004 * 110.52094 * 278.38583 * 27 5 4
46 46 H 1.09002 * 110.64605 * 155.43304 * 27 5 4
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.9005 1.0251 0.0000
4 6 2.0540 -0.7466 -1.2420
5 6 2.9248 -1.8881 -0.6631
6 1 2.3625 -2.8208 -0.6162
7 6 4.1868 -2.0631 -1.4679
8 8 4.4689 -1.2632 -2.3347
9 7 5.0019 -3.1085 -1.2243
10 6 6.2676 -3.2352 -1.9511
11 6 4.6223 -4.1179 -0.2329
12 6 5.8212 -4.7582 0.4901
13 7 5.1046 -6.0386 0.3314
14 6 5.1176 -7.2159 0.9875
15 8 4.3988 -8.1218 0.6218
16 6 6.0260 -7.4069 2.1746
17 16 5.8153 -9.0799 2.8325
18 6 6.9600 -9.0287 4.1711
19 1 7.5282 -8.1302 4.3617
20 6 7.1307 -10.1427 4.9812
21 7 6.4378 -11.2377 4.7493
22 14 8.3437 -10.0882 6.4008
23 1 7.6516 -9.6121 7.6253
24 1 8.8896 -11.4488 6.6379
25 1 9.4543 -9.1605 6.0674
26 6 4.3680 -5.5121 -0.8340
27 6 3.2418 -1.3608 0.7620
28 8 2.0217 -0.6974 1.1568
29 1 -0.3633 -1.0275 0.0180
30 1 -0.3634 0.5294 0.8807
31 1 -0.3633 0.4980 -0.8990
32 1 1.2248 -1.1548 -1.8199
33 1 2.6579 -0.0822 -1.8601
34 1 7.0670 -2.7733 -1.3718
35 1 6.4938 -4.2903 -2.1057
36 1 6.1837 -2.7363 -2.9167
37 1 3.8331 -3.7787 0.4382
38 1 6.7533 -4.7039 -0.0723
39 1 5.9294 -4.4409 1.5272
40 1 7.0618 -7.2659 1.8660
41 1 5.7743 -6.6786 2.9456
42 1 6.5569 -12.0160 5.3157
43 1 3.3159 -5.7967 -0.8540
44 1 4.8733 -5.6793 -1.7852
45 1 4.0708 -0.6537 0.7322
46 1 3.4649 -2.1873 1.4368
RHF calculation, no. of doubly occupied orbitals= 62
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001747958529.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:32:51
Heat of formation + Delta-G solvation = -96.910016 kcal
Electronic energy + Delta-G solvation = -27513.343009 eV
Core-core repulsion = 23529.953620 eV
Total energy + Delta-G solvation = -3983.389389 eV
No. of doubly occupied orbitals = 62
Molecular weight
(most abundant/longest-lived isotopes) = 342.145 amu
Computer time = 0.89 seconds
Orbital eigenvalues (eV)
-42.10003 -41.01577 -39.74316 -38.87772 -35.73118 -34.58182 -33.48119 -32.79359
-31.83444 -29.16470 -28.43180 -27.67612 -27.14422 -26.72769 -24.31019 -23.05330
-22.06133 -20.51163 -20.00078 -19.56715 -18.93334 -18.14588 -17.44851 -17.10825
-16.88747 -16.86238 -16.70514 -16.42497 -16.11232 -16.03718 -15.71408 -15.02323
-14.82756 -14.53332 -14.28026 -14.01087 -13.90249 -13.81594 -13.66755 -13.46289
-13.37074 -13.15896 -13.06863 -12.92936 -12.89146 -12.85229 -12.60567 -12.35681
-12.32701 -11.85647 -11.73956 -11.73678 -11.13949 -11.13429 -10.88561 -10.73806
-10.28328 -9.90239 -9.77272 -8.67689 -8.34482 -6.12964 1.16277 1.36276
1.40971 1.43262 1.50891 1.54218 1.71890 2.09348 2.27532 2.80247
2.99969 3.14196 3.20335 3.25992 3.48356 3.54526 3.69824 3.82303
3.87373 3.96696 4.10159 4.16325 4.26972 4.33711 4.40986 4.44360
4.47222 4.52153 4.57575 4.60492 4.62373 4.65607 4.80321 4.81024
4.89152 4.93964 4.96423 4.99943 5.10800 5.30398 5.30723 5.42312
5.87596 6.13707 6.20134 6.48947 6.96418 7.06516 7.07118 8.74672
Molecular weight = 342.14amu
Principal moments of inertia in cm(-1)
A = 0.016255 B = 0.002164 C = 0.002068
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1722.159334 B =12937.925277 C =13536.883766
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.150 4.150
2 C 0.068 3.932
3 H 0.071 0.929
4 C -0.136 4.136
5 C -0.148 4.148
6 H 0.126 0.874
7 C 0.531 3.469
8 O -0.565 6.565
9 N -0.596 5.596
10 C 0.073 3.927
11 C 0.116 3.884
12 C 0.094 3.906
13 N -0.645 5.645
14 C 0.560 3.440
15 O -0.565 6.565
16 C -0.119 4.119
17 S -0.154 6.154
18 C -0.543 4.543
19 H 0.084 0.916
20 C 0.013 3.987
21 N -0.911 5.911
22 Si 0.999 3.001
23 H -0.268 1.268
24 H -0.279 1.279
25 H -0.257 1.257
26 C 0.090 3.910
27 C 0.062 3.938
28 O -0.387 6.387
29 H 0.062 0.938
30 H 0.060 0.940
31 H 0.085 0.915
32 H 0.093 0.907
33 H 0.083 0.917
34 H 0.074 0.926
35 H 0.086 0.914
36 H 0.071 0.929
37 H 0.144 0.856
38 H 0.113 0.887
39 H 0.112 0.888
40 H 0.107 0.893
41 H 0.111 0.889
42 H 0.271 0.729
43 H 0.087 0.913
44 H 0.098 0.902
45 H 0.066 0.934
46 H 0.117 0.883
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.679 25.666 -12.037 28.731
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.207 4.207
2 C 0.010 3.990
3 H 0.089 0.911
4 C -0.174 4.174
5 C -0.169 4.169
6 H 0.144 0.856
7 C 0.320 3.680
8 O -0.443 6.443
9 N -0.328 5.328
10 C -0.069 4.069
11 C 0.011 3.989
12 C -0.029 4.029
13 N -0.382 5.382
14 C 0.349 3.651
15 O -0.443 6.443
16 C -0.270 4.270
17 S 0.074 5.926
18 C -0.691 4.691
19 H 0.102 0.898
20 C -0.192 4.192
21 N -0.548 5.548
22 Si 0.820 3.180
23 H -0.193 1.193
24 H -0.205 1.205
25 H -0.181 1.181
26 C -0.034 4.034
27 C -0.015 4.015
28 O -0.306 6.306
29 H 0.081 0.919
30 H 0.079 0.921
31 H 0.104 0.896
32 H 0.112 0.888
33 H 0.101 0.899
34 H 0.093 0.907
35 H 0.104 0.896
36 H 0.089 0.911
37 H 0.162 0.838
38 H 0.131 0.869
39 H 0.130 0.870
40 H 0.125 0.875
41 H 0.129 0.871
42 H 0.080 0.920
43 H 0.105 0.895
44 H 0.116 0.884
45 H 0.084 0.916
46 H 0.135 0.865
Dipole moment (debyes) X Y Z Total
from point charges -5.706 24.401 -12.699 28.094
hybrid contribution 1.494 0.365 0.846 1.755
sum -4.213 24.767 -11.853 27.778
Atomic orbital electron populations
1.21951 0.92519 1.03096 1.03169 1.22896 0.96148 0.95887 0.84040
0.91056 1.22967 0.99777 0.96527 0.98166 1.22999 0.94587 1.02772
0.96568 0.85606 1.20460 0.84672 0.79993 0.82839 1.90691 1.75123
1.44222 1.34287 1.47757 1.21331 1.23471 1.40203 1.21860 0.84173
1.03432 0.97406 1.23317 0.99063 0.86055 0.90498 1.23926 0.96766
0.78208 1.03974 1.49630 1.44531 1.12202 1.31847 1.19690 0.81987
0.80176 0.83240 1.90711 1.43630 1.41589 1.68409 1.23278 1.02350
1.02924 0.98477 1.85630 1.57020 1.12397 1.37583 1.23178 1.27007
1.02928 1.16007 0.89778 1.26134 0.98343 0.93952 1.00788 1.70186
1.41190 1.03711 1.39711 0.84952 0.77867 0.77943 0.77216 1.19295
1.20465 1.18091 1.23813 0.99021 0.90174 0.90344 1.23630 0.87930
0.97308 0.92643 1.88921 1.39697 1.67924 1.34089 0.91887 0.92052
0.89642 0.88797 0.89852 0.90700 0.89582 0.91062 0.83832 0.86928
0.87004 0.87486 0.87130 0.92014 0.89504 0.88444 0.91601 0.86486
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.60 9.37 71.98 0.67 -0.93 16
2 C 0.07 0.90 4.05 30.97 0.13 1.02 16
3 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16
4 C -0.14 -1.75 6.11 31.58 0.19 -1.56 16
5 C -0.15 -1.79 2.46 -10.16 -0.02 -1.82 16
6 H 0.13 1.19 7.39 -2.38 -0.02 1.17 16
7 C 0.53 8.21 6.99 87.65 0.61 8.82 16
8 O -0.56 -12.79 14.96 -3.02 -0.05 -12.84 16
9 N -0.60 -6.96 3.08 -828.35 -2.56 -9.51 16
10 C 0.07 0.74 9.08 127.77 1.16 1.90 16
11 C 0.12 1.24 4.01 46.75 0.19 1.43 16
12 C 0.09 1.16 7.99 86.48 0.69 1.85 16
13 N -0.64 -14.62 3.61 -837.23 -3.02 -17.64 16
14 C 0.56 19.86 8.07 87.66 0.71 20.56 16
15 O -0.57 -25.84 16.59 -3.04 -0.05 -25.89 16
16 C -0.12 -4.52 5.91 71.24 0.42 -4.10 16
17 S -0.15 -8.35 20.57 -56.49 -1.16 -9.52 16
18 C -0.54 -30.30 9.50 67.95 0.65 -29.65 16
19 H 0.08 4.32 7.80 -2.91 -0.02 4.30 16
20 C 0.01 0.70 5.49 84.86 0.47 1.17 16
21 N -0.91 -55.35 13.22 21.65 0.29 -55.06 16
22 Si 1.00 42.72 29.55 68.60 2.03 44.75 16
23 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16
24 H -0.28 -11.72 7.11 99.48 0.71 -11.01 16
25 H -0.26 -10.26 7.11 99.48 0.71 -9.55 16
26 C 0.09 1.47 8.39 86.48 0.73 2.20 16
27 C 0.06 0.75 6.78 72.75 0.49 1.25 16
28 O -0.39 -6.48 11.19 -148.98 -1.67 -8.15 16
29 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16
30 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16
31 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16
32 H 0.09 1.00 7.70 -2.38 -0.02 0.98 16
33 H 0.08 1.33 6.78 -2.39 -0.02 1.31 16
34 H 0.07 0.59 8.14 -2.39 -0.02 0.58 16
35 H 0.09 0.68 6.55 -2.39 -0.02 0.66 16
36 H 0.07 0.95 7.29 -2.38 -0.02 0.93 16
37 H 0.14 1.20 4.84 -2.38 -0.01 1.18 16
38 H 0.11 1.04 6.50 -2.39 -0.02 1.02 16
39 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16
40 H 0.11 3.66 8.14 -2.40 -0.02 3.64 16
41 H 0.11 3.71 8.14 -2.40 -0.02 3.69 16
42 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16
43 H 0.09 1.52 8.14 -2.38 -0.02 1.50 16
44 H 0.10 1.44 7.31 -2.39 -0.02 1.42 16
45 H 0.07 0.82 8.04 -2.38 -0.02 0.80 16
46 H 0.12 1.02 6.81 -2.39 -0.02 1.00 16
Total: -1.00 -81.83 386.89 1.88 -79.95
By element:
Atomic # 1 Polarization: 10.78 SS G_CDS: 0.99 Total: 11.76 kcal
Atomic # 6 Polarization: -4.94 SS G_CDS: 7.08 Total: 2.14 kcal
Atomic # 7 Polarization: -76.93 SS G_CDS: -5.29 Total: -82.21 kcal
Atomic # 8 Polarization: -45.11 SS G_CDS: -1.76 Total: -46.87 kcal
Atomic # 14 Polarization: 42.72 SS G_CDS: 2.03 Total: 44.75 kcal
Atomic # 16 Polarization: -8.35 SS G_CDS: -1.16 Total: -9.52 kcal
Total: -81.83 1.88 -79.95 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001747958529.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -16.963 kcal
(2) G-P(sol) polarization free energy of solvation -81.825 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.788 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.878 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.947 kcal
(6) G-S(sol) free energy of system = (1) + (5) -96.910 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.89 seconds