Wall clock time and date at job start Sat Apr 11 2020 06:32:05
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52992 * 1
3 3 H 1.09003 * 109.47451 * 2 1
4 4 O 1.42910 * 109.46931 * 240.00065 * 2 1 3
5 5 C 1.53004 * 109.47542 * 120.00247 * 2 1 3
6 6 N 1.46501 * 109.47220 * 183.15084 * 5 2 1
7 7 C 1.46504 * 119.99773 * 81.10021 * 6 5 2
8 8 C 1.50698 * 109.46848 * 80.41147 * 7 6 5
9 9 C 1.38235 * 119.99985 * 275.51053 * 8 7 6
10 10 C 1.38242 * 119.99887 * 179.76779 * 9 8 7
11 11 C 1.38235 * 119.99651 * 0.48482 * 10 9 8
12 12 C 1.38235 * 120.00532 * 359.79213 * 11 10 9
13 13 C 1.38230 * 119.99718 * 359.95106 * 12 11 10
14 14 S 1.65597 * 120.00039 * 261.10030 * 6 5 2
15 15 O 1.42100 * 106.40266 * 30.79356 * 14 6 5
16 16 O 1.42098 * 106.40290 * 163.71286 * 14 6 5
17 17 N 1.65599 * 107.21723 * 277.25440 * 14 6 5
18 18 C 1.46498 * 119.99920 * 273.51270 * 17 14 6
19 19 C 1.46499 * 119.99930 * 93.51811 * 17 14 6
20 20 C 1.50701 * 109.47061 * 95.00068 * 19 17 14
21 21 H 1.07999 * 120.00241 * 359.97438 * 20 19 17
22 22 C 1.37884 * 119.99891 * 180.02562 * 20 19 17
23 23 N 1.31514 * 119.99826 * 359.97438 * 22 20 19
24 24 Si 1.86797 * 119.99962 * 179.97438 * 22 20 19
25 25 H 1.48500 * 109.46967 * 59.99979 * 24 22 20
26 26 H 1.48496 * 109.47324 * 179.97438 * 24 22 20
27 27 H 1.48492 * 109.47483 * 300.00117 * 24 22 20
28 28 H 1.08997 * 109.47475 * 60.00005 * 1 2 3
29 29 H 1.09003 * 109.47451 * 179.97438 * 1 2 3
30 30 H 1.09006 * 109.46748 * 299.99478 * 1 2 3
31 31 H 0.96696 * 113.99719 * 55.09714 * 4 2 1
32 32 H 1.08999 * 109.46634 * 303.15291 * 5 2 1
33 33 H 1.08995 * 109.46907 * 63.15127 * 5 2 1
34 34 H 1.09003 * 109.46615 * 200.40863 * 7 6 5
35 35 H 1.08998 * 109.47448 * 320.40959 * 7 6 5
36 36 H 1.07991 * 120.00109 * 0.02562 * 9 8 7
37 37 H 1.07996 * 120.00179 * 180.25272 * 10 9 8
38 38 H 1.08002 * 119.99780 * 179.76979 * 11 10 9
39 39 H 1.08000 * 120.00417 * 179.97438 * 12 11 10
40 40 H 1.08003 * 120.00183 * 180.02562 * 13 12 11
41 41 H 1.09005 * 109.46850 * 94.42499 * 18 17 14
42 42 H 1.08999 * 109.47187 * 214.41646 * 18 17 14
43 43 H 1.08996 * 109.47527 * 334.42379 * 18 17 14
44 44 H 1.09005 * 109.47323 * 214.99773 * 19 17 14
45 45 H 1.09003 * 109.47250 * 334.99908 * 19 17 14
46 46 H 0.97003 * 119.99487 * 180.02562 * 23 22 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 8 2.0062 -0.6737 -1.1669
5 6 2.0400 -0.7213 1.2492
6 7 3.5031 -0.6559 1.2877
7 6 4.1695 0.5505 1.7845
8 6 4.1767 0.5359 3.2914
9 6 3.0799 1.0012 3.9924
10 6 3.0846 0.9833 5.3747
11 6 4.1902 0.5094 6.0560
12 6 5.2893 0.0494 5.3551
13 6 5.2824 0.0624 3.9728
14 16 4.4035 -1.9455 0.7696
15 8 3.6442 -2.5816 -0.2492
16 8 5.7226 -1.4579 0.5661
17 7 4.4906 -3.0193 2.0273
18 6 5.5392 -2.8772 3.0404
19 6 3.5192 -4.1113 2.1267
20 6 4.0945 -5.3541 1.4976
21 1 5.0845 -5.3326 1.0666
22 6 3.3564 -6.5185 1.4715
23 7 2.1507 -6.5446 1.9960
24 14 4.0691 -8.0588 0.6912
25 1 5.3169 -8.4407 1.4000
26 1 3.0845 -9.1658 0.7920
27 1 4.3729 -7.7945 -0.7381
28 1 -0.3634 0.5138 -0.8899
29 1 -0.3634 -1.0277 -0.0005
30 1 -0.3633 0.5138 0.8901
31 1 1.6608 -0.3159 -1.9961
32 1 1.6313 -0.2411 2.1383
33 1 1.7236 -1.7639 1.2214
34 1 5.1952 0.5766 1.4165
35 1 3.6345 1.4324 1.4323
36 1 2.2177 1.3748 3.4602
37 1 2.2262 1.3430 5.9224
38 1 4.1954 0.4989 7.1359
39 1 6.1532 -0.3205 5.8873
40 1 6.1410 -0.2974 3.4251
41 1 5.1536 -2.3056 3.8847
42 1 5.8507 -3.8643 3.3819
43 1 6.3935 -2.3558 2.6086
44 1 3.2963 -4.3051 3.1759
45 1 2.6032 -3.8313 1.6063
46 1 1.6316 -7.3639 1.9780
RHF calculation, no. of doubly occupied orbitals= 62
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000533551351.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:32:05
Heat of formation + Delta-G solvation = -93.293725 kcal
Electronic energy + Delta-G solvation = -30006.261832 eV
Core-core repulsion = 26023.029258 eV
Total energy + Delta-G solvation = -3983.232575 eV
No. of doubly occupied orbitals = 62
Molecular weight
(most abundant/longest-lived isotopes) = 342.145 amu
Computer time = 0.68 seconds
Orbital eigenvalues (eV)
-39.41401 -37.78156 -36.46860 -35.39847 -35.36564 -34.89497 -32.37238 -31.88112
-30.92185 -30.53854 -27.68721 -26.96004 -25.00479 -24.67137 -22.58217 -22.17931
-21.58559 -20.89759 -18.41387 -17.46520 -16.97062 -16.86241 -16.40083 -16.27089
-15.91881 -15.31489 -14.96297 -14.88731 -14.51899 -14.26296 -13.95895 -13.47462
-13.40386 -13.24509 -13.08849 -12.59400 -12.38176 -12.29717 -12.20840 -12.06430
-12.04523 -11.89525 -11.52114 -11.40232 -11.29257 -11.09631 -11.03297 -10.95963
-10.84557 -10.66940 -10.57110 -10.40284 -9.95726 -9.81886 -9.69950 -8.89093
-8.88332 -8.72604 -8.37556 -7.92115 -6.00578 -4.04034 1.18422 1.41285
1.49525 3.37583 3.40593 3.45752 3.52049 3.87617 4.23999 4.39207
4.49995 4.77316 4.77748 4.93359 4.98730 5.02826 5.10768 5.13926
5.24187 5.24861 5.34498 5.43985 5.49606 5.62611 5.65763 5.70020
5.75866 5.82197 5.93230 5.98247 6.00499 6.09327 6.13644 6.29476
6.37985 6.45205 6.51596 6.60397 6.63677 6.86518 7.00413 7.31380
7.50400 7.71291 7.91525 7.97317 8.27900 8.97824 9.60621 11.07974
Molecular weight = 342.14amu
Principal moments of inertia in cm(-1)
A = 0.010189 B = 0.004981 C = 0.004057
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2747.357627 B = 5620.531658 C = 6899.646264
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.186 4.186
2 C 0.082 3.918
3 H 0.051 0.949
4 O -0.539 6.539
5 C 0.131 3.869
6 N -0.998 5.998
7 C 0.154 3.846
8 C -0.104 4.104
9 C -0.105 4.105
10 C -0.123 4.123
11 C -0.119 4.119
12 C -0.118 4.118
13 C -0.106 4.106
14 S 2.776 3.224
15 O -0.936 6.936
16 O -1.002 7.002
17 N -0.996 5.996
18 C 0.093 3.907
19 C 0.260 3.740
20 C -0.527 4.527
21 H 0.058 0.942
22 C 0.063 3.937
23 N -0.896 5.896
24 Si 0.896 3.104
25 H -0.277 1.277
26 H -0.286 1.286
27 H -0.274 1.274
28 H 0.058 0.942
29 H 0.070 0.930
30 H 0.063 0.937
31 H 0.368 0.632
32 H 0.084 0.916
33 H 0.093 0.907
34 H 0.100 0.900
35 H 0.081 0.919
36 H 0.119 0.881
37 H 0.119 0.881
38 H 0.118 0.882
39 H 0.122 0.878
40 H 0.126 0.874
41 H 0.043 0.957
42 H 0.072 0.928
43 H 0.062 0.938
44 H 0.031 0.969
45 H 0.037 0.963
46 H 0.263 0.737
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.948 18.945 4.787 19.563
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.244 4.244
2 C 0.021 3.979
3 H 0.069 0.931
4 O -0.343 6.343
5 C 0.005 3.995
6 N -0.833 5.833
7 C 0.028 3.972
8 C -0.106 4.106
9 C -0.123 4.123
10 C -0.141 4.141
11 C -0.138 4.138
12 C -0.136 4.136
13 C -0.124 4.124
14 S 2.784 3.216
15 O -0.920 6.920
16 O -0.987 6.987
17 N -0.838 5.838
18 C -0.054 4.054
19 C 0.137 3.863
20 C -0.567 4.567
21 H 0.076 0.924
22 C -0.139 4.139
23 N -0.536 5.536
24 Si 0.723 3.277
25 H -0.202 1.202
26 H -0.212 1.212
27 H -0.200 1.200
28 H 0.077 0.923
29 H 0.089 0.911
30 H 0.082 0.918
31 H 0.214 0.786
32 H 0.102 0.898
33 H 0.112 0.888
34 H 0.118 0.882
35 H 0.099 0.901
36 H 0.137 0.863
37 H 0.137 0.863
38 H 0.136 0.864
39 H 0.140 0.860
40 H 0.144 0.856
41 H 0.062 0.938
42 H 0.091 0.909
43 H 0.081 0.919
44 H 0.049 0.951
45 H 0.055 0.945
46 H 0.073 0.927
Dipole moment (debyes) X Y Z Total
from point charges -0.403 18.348 4.397 18.871
hybrid contribution -0.329 -0.549 -0.226 0.679
sum -0.732 17.799 4.171 18.295
Atomic orbital electron populations
1.22490 0.96293 1.03460 1.02153 1.22221 0.92610 0.95314 0.87768
0.93078 1.86900 1.72150 1.60275 1.14996 1.21296 0.79629 1.02921
0.95614 1.58332 1.15123 1.29888 1.79960 1.20211 0.99466 0.88541
0.88979 1.20358 0.94539 0.99250 0.96413 1.20993 0.97509 0.99731
0.94106 1.21101 0.98296 1.00388 0.94345 1.21135 0.93841 0.99075
0.99728 1.21137 0.98585 0.99737 0.94157 1.21245 0.98329 0.98304
0.94565 1.02273 0.72985 0.72270 0.74024 1.93675 1.71395 1.73555
1.53333 1.93476 1.38020 1.81499 1.85666 1.57704 1.40610 1.42170
1.43312 1.21483 0.89956 1.02686 0.91271 1.18999 0.86299 0.83121
0.97832 1.21460 1.02234 0.95002 1.37960 0.92353 1.24915 0.94788
0.98926 0.95301 1.69913 1.10241 1.28103 1.45295 0.86595 0.78701
0.82172 0.80216 1.20227 1.21190 1.19981 0.92316 0.91101 0.91776
0.78650 0.89758 0.88844 0.88214 0.90063 0.86343 0.86340 0.86359
0.86001 0.85602 0.93837 0.90874 0.91928 0.95054 0.94489 0.92731
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.19 -1.87 9.49 37.15 0.35 -1.51 16
2 C 0.08 1.02 3.81 -26.73 -0.10 0.92 16
3 H 0.05 0.54 7.73 -51.93 -0.40 0.14 16
4 O -0.54 -8.34 11.58 -53.13 -0.62 -8.96 16
5 C 0.13 1.90 5.09 -4.04 -0.02 1.88 16
6 N -1.00 -15.90 2.77 -115.66 -0.32 -16.22 16
7 C 0.15 1.99 5.81 -5.19 -0.03 1.96 16
8 C -0.10 -1.28 5.41 -104.62 -0.57 -1.85 16
9 C -0.10 -1.14 8.94 -39.58 -0.35 -1.50 16
10 C -0.12 -1.27 10.05 -39.58 -0.40 -1.67 16
11 C -0.12 -1.25 10.05 -39.58 -0.40 -1.64 16
12 C -0.12 -1.31 9.95 -39.59 -0.39 -1.71 16
13 C -0.11 -1.32 7.26 -39.58 -0.29 -1.61 16
14 S 2.78 58.64 5.98 -107.50 -0.64 58.00 16
15 O -0.94 -23.53 14.48 -64.87 -0.94 -24.47 16
16 O -1.00 -21.81 15.17 -57.17 -0.87 -22.67 16
17 N -1.00 -21.72 3.23 -123.05 -0.40 -22.12 16
18 C 0.09 1.69 9.73 59.85 0.58 2.28 16
19 C 0.26 6.72 5.11 -5.19 -0.03 6.70 16
20 C -0.53 -15.23 9.38 -34.44 -0.32 -15.55 16
21 H 0.06 1.69 7.81 -52.49 -0.41 1.28 16
22 C 0.06 1.82 5.46 -17.82 -0.10 1.72 16
23 N -0.90 -26.58 13.29 55.43 0.74 -25.84 16
24 Si 0.90 22.31 29.54 -169.99 -5.02 17.29 16
25 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16
26 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16
27 H -0.27 -6.88 7.11 56.52 0.40 -6.48 16
28 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16
29 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16
30 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16
31 H 0.37 3.91 9.03 45.56 0.41 4.32 16
32 H 0.08 0.97 6.65 -51.93 -0.35 0.63 16
33 H 0.09 1.63 7.22 -51.93 -0.38 1.25 16
34 H 0.10 1.36 6.68 -51.93 -0.35 1.01 16
35 H 0.08 0.83 7.70 -51.93 -0.40 0.43 16
36 H 0.12 1.06 7.44 -52.49 -0.39 0.67 16
37 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16
38 H 0.12 0.99 8.06 -52.49 -0.42 0.56 16
39 H 0.12 1.13 8.06 -52.49 -0.42 0.70 16
40 H 0.13 1.58 7.11 -52.48 -0.37 1.20 16
41 H 0.04 0.70 6.02 -51.93 -0.31 0.38 16
42 H 0.07 1.37 8.10 -51.93 -0.42 0.95 16
43 H 0.06 1.07 6.53 -51.93 -0.34 0.73 16
44 H 0.03 0.83 8.11 -51.93 -0.42 0.41 16
45 H 0.04 1.02 7.06 -51.93 -0.37 0.65 16
46 H 0.26 7.38 8.31 -40.82 -0.34 7.05 16
LS Contribution 383.00 15.07 5.77 5.77
Total: -1.00 -36.11 383.00 -10.52 -46.63
By element:
Atomic # 1 Polarization: 10.34 SS G_CDS: -6.16 Total: 4.18 kcal
Atomic # 6 Polarization: -9.53 SS G_CDS: -2.06 Total: -11.59 kcal
Atomic # 7 Polarization: -64.20 SS G_CDS: 0.02 Total: -64.18 kcal
Atomic # 8 Polarization: -53.67 SS G_CDS: -2.42 Total: -56.10 kcal
Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.29 kcal
Atomic # 16 Polarization: 58.64 SS G_CDS: -0.64 Total: 58.00 kcal
Total LS contribution 5.77 Total: 5.77 kcal
Total: -36.11 -10.52 -46.63 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000533551351.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -46.667 kcal
(2) G-P(sol) polarization free energy of solvation -36.108 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.775 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.518 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.626 kcal
(6) G-S(sol) free energy of system = (1) + (5) -93.294 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.68 seconds