Wall clock time and date at job start Sat Apr 11 2020 06:32:04
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52992 * 1
3 3 H 1.09003 * 109.47451 * 2 1
4 4 O 1.42910 * 109.46931 * 240.00065 * 2 1 3
5 5 C 1.53004 * 109.47542 * 120.00247 * 2 1 3
6 6 N 1.46501 * 109.47220 * 183.15084 * 5 2 1
7 7 C 1.46504 * 119.99773 * 81.10021 * 6 5 2
8 8 C 1.50698 * 109.46848 * 80.41147 * 7 6 5
9 9 C 1.38235 * 119.99985 * 275.51053 * 8 7 6
10 10 C 1.38242 * 119.99887 * 179.76779 * 9 8 7
11 11 C 1.38235 * 119.99651 * 0.48482 * 10 9 8
12 12 C 1.38235 * 120.00532 * 359.79213 * 11 10 9
13 13 C 1.38230 * 119.99718 * 359.95106 * 12 11 10
14 14 S 1.65597 * 120.00039 * 261.10030 * 6 5 2
15 15 O 1.42100 * 106.40266 * 30.79356 * 14 6 5
16 16 O 1.42098 * 106.40290 * 163.71286 * 14 6 5
17 17 N 1.65599 * 107.21723 * 277.25440 * 14 6 5
18 18 C 1.46498 * 119.99920 * 273.51270 * 17 14 6
19 19 C 1.46499 * 119.99930 * 93.51811 * 17 14 6
20 20 C 1.50701 * 109.47061 * 95.00068 * 19 17 14
21 21 H 1.07999 * 120.00241 * 359.97438 * 20 19 17
22 22 C 1.37884 * 119.99891 * 180.02562 * 20 19 17
23 23 N 1.31514 * 119.99826 * 359.97438 * 22 20 19
24 24 Si 1.86797 * 119.99962 * 179.97438 * 22 20 19
25 25 H 1.48500 * 109.46967 * 59.99979 * 24 22 20
26 26 H 1.48496 * 109.47324 * 179.97438 * 24 22 20
27 27 H 1.48492 * 109.47483 * 300.00117 * 24 22 20
28 28 H 1.08997 * 109.47475 * 60.00005 * 1 2 3
29 29 H 1.09003 * 109.47451 * 179.97438 * 1 2 3
30 30 H 1.09006 * 109.46748 * 299.99478 * 1 2 3
31 31 H 0.96696 * 113.99719 * 55.09714 * 4 2 1
32 32 H 1.08999 * 109.46634 * 303.15291 * 5 2 1
33 33 H 1.08995 * 109.46907 * 63.15127 * 5 2 1
34 34 H 1.09003 * 109.46615 * 200.40863 * 7 6 5
35 35 H 1.08998 * 109.47448 * 320.40959 * 7 6 5
36 36 H 1.07991 * 120.00109 * 0.02562 * 9 8 7
37 37 H 1.07996 * 120.00179 * 180.25272 * 10 9 8
38 38 H 1.08002 * 119.99780 * 179.76979 * 11 10 9
39 39 H 1.08000 * 120.00417 * 179.97438 * 12 11 10
40 40 H 1.08003 * 120.00183 * 180.02562 * 13 12 11
41 41 H 1.09005 * 109.46850 * 94.42499 * 18 17 14
42 42 H 1.08999 * 109.47187 * 214.41646 * 18 17 14
43 43 H 1.08996 * 109.47527 * 334.42379 * 18 17 14
44 44 H 1.09005 * 109.47323 * 214.99773 * 19 17 14
45 45 H 1.09003 * 109.47250 * 334.99908 * 19 17 14
46 46 H 0.97003 * 119.99487 * 180.02562 * 23 22 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 8 2.0062 -0.6737 -1.1669
5 6 2.0400 -0.7213 1.2492
6 7 3.5031 -0.6559 1.2877
7 6 4.1695 0.5505 1.7845
8 6 4.1767 0.5359 3.2914
9 6 3.0799 1.0012 3.9924
10 6 3.0846 0.9833 5.3747
11 6 4.1902 0.5094 6.0560
12 6 5.2893 0.0494 5.3551
13 6 5.2824 0.0624 3.9728
14 16 4.4035 -1.9455 0.7696
15 8 3.6442 -2.5816 -0.2492
16 8 5.7226 -1.4579 0.5661
17 7 4.4906 -3.0193 2.0273
18 6 5.5392 -2.8772 3.0404
19 6 3.5192 -4.1113 2.1267
20 6 4.0945 -5.3541 1.4976
21 1 5.0845 -5.3326 1.0666
22 6 3.3564 -6.5185 1.4715
23 7 2.1507 -6.5446 1.9960
24 14 4.0691 -8.0588 0.6912
25 1 5.3169 -8.4407 1.4000
26 1 3.0845 -9.1658 0.7920
27 1 4.3729 -7.7945 -0.7381
28 1 -0.3634 0.5138 -0.8899
29 1 -0.3634 -1.0277 -0.0005
30 1 -0.3633 0.5138 0.8901
31 1 1.6608 -0.3159 -1.9961
32 1 1.6313 -0.2411 2.1383
33 1 1.7236 -1.7639 1.2214
34 1 5.1952 0.5766 1.4165
35 1 3.6345 1.4324 1.4323
36 1 2.2177 1.3748 3.4602
37 1 2.2262 1.3430 5.9224
38 1 4.1954 0.4989 7.1359
39 1 6.1532 -0.3205 5.8873
40 1 6.1410 -0.2974 3.4251
41 1 5.1536 -2.3056 3.8847
42 1 5.8507 -3.8643 3.3819
43 1 6.3935 -2.3558 2.6086
44 1 3.2963 -4.3051 3.1759
45 1 2.6032 -3.8313 1.6063
46 1 1.6316 -7.3639 1.9780
RHF calculation, no. of doubly occupied orbitals= 62
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000533551351.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:32:04
Heat of formation + Delta-G solvation = -119.353121 kcal
Electronic energy + Delta-G solvation = -30007.391852 eV
Core-core repulsion = 26023.029258 eV
Total energy + Delta-G solvation = -3984.362595 eV
No. of doubly occupied orbitals = 62
Molecular weight
(most abundant/longest-lived isotopes) = 342.145 amu
Computer time = 0.67 seconds
Orbital eigenvalues (eV)
-40.29830 -38.85536 -38.16348 -37.19854 -36.68718 -36.52320 -34.51381 -32.85655
-31.75517 -31.50048 -29.66533 -27.93021 -26.80852 -25.76314 -24.17376 -23.40936
-22.52560 -21.91855 -19.86983 -19.05817 -18.46334 -18.33690 -17.93124 -17.60461
-17.26374 -16.69736 -16.21227 -16.00643 -15.81499 -15.50361 -15.18886 -15.06321
-14.78299 -14.26639 -14.16661 -14.06958 -13.89101 -13.62984 -13.46561 -13.31391
-13.25889 -13.18364 -13.01538 -12.92295 -12.88639 -12.64985 -12.46707 -12.41946
-12.31891 -12.28738 -11.94145 -11.79245 -11.77004 -11.70682 -10.81358 -10.60752
-10.05172 -9.84721 -9.63224 -9.59928 -8.21017 -6.33285 -0.30403 0.50007
0.58641 1.37015 1.41200 1.48327 2.08829 2.39148 2.63907 2.99380
3.09348 3.38492 3.50811 3.85838 3.88972 4.04807 4.09552 4.13832
4.16998 4.23629 4.32318 4.35015 4.42901 4.65722 4.67030 4.70219
4.75955 4.76926 4.82738 4.92420 4.99867 5.02518 5.09115 5.16226
5.16933 5.24779 5.36646 5.44574 5.61412 5.63707 5.70116 5.70539
5.76861 5.98264 6.10507 6.19403 6.74038 7.06958 7.35190 8.86391
Molecular weight = 342.14amu
Principal moments of inertia in cm(-1)
A = 0.010189 B = 0.004981 C = 0.004057
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2747.357627 B = 5620.531658 C = 6899.646264
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.179 4.179
2 C 0.079 3.921
3 H 0.081 0.919
4 O -0.578 6.578
5 C 0.125 3.875
6 N -0.987 5.987
7 C 0.151 3.849
8 C -0.119 4.119
9 C -0.107 4.107
10 C -0.127 4.127
11 C -0.124 4.124
12 C -0.128 4.128
13 C -0.126 4.126
14 S 2.786 3.214
15 O -0.984 6.984
16 O -1.015 7.015
17 N -1.004 6.004
18 C 0.091 3.909
19 C 0.279 3.721
20 C -0.552 4.552
21 H 0.048 0.952
22 C 0.014 3.986
23 N -0.922 5.922
24 Si 0.956 3.044
25 H -0.263 1.263
26 H -0.273 1.273
27 H -0.278 1.278
28 H 0.078 0.922
29 H 0.045 0.955
30 H 0.087 0.913
31 H 0.385 0.615
32 H 0.118 0.882
33 H 0.054 0.946
34 H 0.089 0.911
35 H 0.117 0.883
36 H 0.141 0.859
37 H 0.143 0.857
38 H 0.140 0.860
39 H 0.135 0.865
40 H 0.116 0.884
41 H 0.067 0.933
42 H 0.064 0.936
43 H 0.073 0.927
44 H 0.021 0.979
45 H 0.014 0.986
46 H 0.268 0.732
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.538 20.661 5.865 21.533
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.237 4.237
2 C 0.019 3.981
3 H 0.099 0.901
4 O -0.385 6.385
5 C 0.000 4.000
6 N -0.825 5.825
7 C 0.026 3.974
8 C -0.121 4.121
9 C -0.126 4.126
10 C -0.145 4.145
11 C -0.142 4.142
12 C -0.146 4.146
13 C -0.145 4.145
14 S 2.795 3.205
15 O -0.967 6.967
16 O -0.999 6.999
17 N -0.845 5.845
18 C -0.054 4.054
19 C 0.155 3.845
20 C -0.591 4.591
21 H 0.066 0.934
22 C -0.186 4.186
23 N -0.562 5.562
24 Si 0.780 3.220
25 H -0.188 1.188
26 H -0.198 1.198
27 H -0.204 1.204
28 H 0.097 0.903
29 H 0.064 0.936
30 H 0.106 0.894
31 H 0.233 0.767
32 H 0.136 0.864
33 H 0.072 0.928
34 H 0.107 0.893
35 H 0.135 0.865
36 H 0.159 0.841
37 H 0.161 0.839
38 H 0.157 0.843
39 H 0.153 0.847
40 H 0.134 0.866
41 H 0.085 0.915
42 H 0.083 0.917
43 H 0.092 0.908
44 H 0.039 0.961
45 H 0.032 0.968
46 H 0.077 0.923
Dipole moment (debyes) X Y Z Total
from point charges -0.972 20.076 5.482 20.834
hybrid contribution -0.156 -0.951 -0.493 1.083
sum -1.128 19.125 4.989 19.797
Atomic orbital electron populations
1.22432 0.94379 1.02512 1.04371 1.22379 0.94086 0.95860 0.85782
0.90118 1.86857 1.73154 1.61759 1.16760 1.21536 0.78504 1.01458
0.98531 1.57868 1.15574 1.29219 1.79886 1.20453 0.99140 0.88020
0.89746 1.20348 0.95349 1.00497 0.95875 1.21269 0.97581 0.99110
0.94622 1.21464 0.98996 0.99678 0.94375 1.21483 0.93523 0.98201
1.00988 1.21368 0.99592 0.99843 0.93787 1.21333 0.98464 0.99300
0.95373 1.01665 0.72630 0.72643 0.73529 1.93611 1.72310 1.75230
1.55569 1.93446 1.38967 1.81602 1.85889 1.57619 1.40778 1.41956
1.44142 1.21634 0.89626 1.02766 0.91392 1.18502 0.86207 0.83446
0.96317 1.21783 1.02111 0.96646 1.38544 0.93360 1.25741 0.95172
1.01995 0.95670 1.70004 1.11161 1.29109 1.45914 0.85652 0.78745
0.78662 0.78935 1.18795 1.19771 1.20366 0.90276 0.93604 0.89379
0.76699 0.86382 0.92752 0.89317 0.86533 0.84079 0.83924 0.84256
0.84671 0.86565 0.91455 0.91686 0.90807 0.96067 0.96808 0.92323
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.18 -3.23 9.49 71.98 0.68 -2.55 16
2 C 0.08 1.85 3.81 30.59 0.12 1.96 16
3 H 0.08 1.42 7.73 -2.39 -0.02 1.40 16
4 O -0.58 -17.93 11.58 -131.87 -1.53 -19.45 16
5 C 0.13 3.53 5.09 86.38 0.44 3.97 16
6 N -0.99 -31.00 2.77 -519.84 -1.44 -32.44 16
7 C 0.15 3.65 5.81 85.63 0.50 4.15 16
8 C -0.12 -2.72 5.41 -19.86 -0.11 -2.83 16
9 C -0.11 -2.01 8.94 22.27 0.20 -1.81 16
10 C -0.13 -2.22 10.05 22.27 0.22 -1.99 16
11 C -0.12 -2.25 10.05 22.27 0.22 -2.03 16
12 C -0.13 -2.64 9.95 22.27 0.22 -2.42 16
13 C -0.13 -3.02 7.26 22.27 0.16 -2.85 16
14 S 2.79 120.89 5.98 -56.49 -0.34 120.55 16
15 O -0.98 -51.67 14.48 -120.65 -1.75 -53.42 16
16 O -1.01 -44.97 15.17 -128.00 -1.94 -46.92 16
17 N -1.00 -45.12 3.23 -543.22 -1.75 -46.87 16
18 C 0.09 3.39 9.73 127.77 1.24 4.63 16
19 C 0.28 15.03 5.11 85.63 0.44 15.47 16
20 C -0.55 -32.82 9.38 25.60 0.24 -32.58 16
21 H 0.05 2.89 7.81 -2.91 -0.02 2.87 16
22 C 0.01 0.81 5.46 84.66 0.46 1.28 16
23 N -0.92 -55.60 13.29 21.45 0.28 -55.31 16
24 Si 0.96 46.07 29.54 68.60 2.03 48.10 16
25 H -0.26 -12.05 7.11 99.48 0.71 -11.34 16
26 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16
27 H -0.28 -13.50 7.11 99.48 0.71 -12.79 16
28 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16
29 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16
30 H 0.09 1.16 8.14 -2.38 -0.02 1.14 16
31 H 0.38 8.08 9.03 -74.06 -0.67 7.42 16
32 H 0.12 2.45 6.65 -2.39 -0.02 2.43 16
33 H 0.05 1.98 7.22 -2.39 -0.02 1.96 16
34 H 0.09 2.36 6.68 -2.39 -0.02 2.34 16
35 H 0.12 1.99 7.70 -2.39 -0.02 1.97 16
36 H 0.14 1.92 7.44 -2.92 -0.02 1.90 16
37 H 0.14 1.76 8.06 -2.91 -0.02 1.73 16
38 H 0.14 1.88 8.06 -2.91 -0.02 1.86 16
39 H 0.14 2.30 8.06 -2.91 -0.02 2.27 16
40 H 0.12 2.91 7.11 -2.91 -0.02 2.89 16
41 H 0.07 2.15 6.02 -2.38 -0.01 2.14 16
42 H 0.06 2.48 8.10 -2.39 -0.02 2.46 16
43 H 0.07 2.54 6.53 -2.39 -0.02 2.53 16
44 H 0.02 1.17 8.11 -2.38 -0.02 1.15 16
45 H 0.01 0.81 7.06 -2.39 -0.02 0.79 16
46 H 0.27 15.14 8.31 -92.71 -0.77 14.36 16
Total: -1.00 -80.45 383.00 -1.07 -81.52
By element:
Atomic # 1 Polarization: 21.53 SS G_CDS: 0.32 Total: 21.85 kcal
Atomic # 6 Polarization: -22.66 SS G_CDS: 5.04 Total: -17.61 kcal
Atomic # 7 Polarization: -131.72 SS G_CDS: -2.91 Total: -134.62 kcal
Atomic # 8 Polarization: -114.57 SS G_CDS: -5.22 Total: -119.79 kcal
Atomic # 14 Polarization: 46.07 SS G_CDS: 2.03 Total: 48.10 kcal
Atomic # 16 Polarization: 120.89 SS G_CDS: -0.34 Total: 120.55 kcal
Total: -80.45 -1.07 -81.52 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000533551351.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -37.830 kcal
(2) G-P(sol) polarization free energy of solvation -80.450 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.280 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.073 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.523 kcal
(6) G-S(sol) free energy of system = (1) + (5) -119.353 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.67 seconds