Wall clock time and date at job start Sat Apr 11 2020 06:33:27
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 H 1.09004 * 109.46917 * 2 1
4 4 C 1.50702 * 109.46961 * 240.00704 * 2 1 3
5 5 H 1.08008 * 119.99611 * 274.99245 * 4 2 1
6 6 C 1.37870 * 120.00516 * 94.99395 * 4 2 1
7 7 N 1.31513 * 120.00239 * 184.91097 * 6 4 2
8 8 Si 1.86803 * 119.99695 * 4.91709 * 6 4 2
9 9 H 1.48500 * 109.47263 * 84.83490 * 8 6 4
10 10 H 1.48503 * 109.46892 * 204.83316 * 8 6 4
11 11 H 1.48494 * 109.47116 * 324.82737 * 8 6 4
12 12 O 1.45197 * 109.47560 * 120.00415 * 2 1 3
13 13 C 1.34237 * 116.99838 * 270.00173 * 12 2 1
14 14 O 1.20832 * 119.99838 * 359.97438 * 13 12 2
15 15 C 1.50694 * 119.99819 * 179.97438 * 13 12 2
16 16 C 1.53008 * 109.47038 * 180.02562 * 15 13 12
17 17 C 1.52993 * 109.47214 * 179.97438 * 16 15 13
18 18 C 1.52996 * 109.47092 * 179.97438 * 17 16 15
19 19 C 1.53005 * 109.47254 * 180.02562 * 18 17 16
20 20 H 1.08997 * 110.68007 * 56.79489 * 19 18 17
21 21 S 1.83915 * 110.75958 * 293.54676 * 19 18 17
22 22 C 1.83912 * 94.80760 * 206.82001 * 21 19 18
23 23 C 1.54128 * 102.88522 * 34.58495 * 22 21 19
24 24 H 1.08997 * 110.25323 * 212.03848 * 23 22 21
25 25 N 1.47364 * 109.09892 * 90.07113 * 23 22 21
26 26 C 1.33996 * 109.17815 * 240.02698 * 25 23 22
27 27 O 1.21591 * 123.05562 * 180.08375 * 26 25 23
28 28 N 1.33998 * 113.88800 * 0.12422 * 26 25 23
29 29 C 1.47128 * 109.04413 * 359.97438 * 28 26 25
30 30 H 1.08994 * 110.25985 * 241.49228 * 29 28 26
31 31 H 1.09004 * 109.47131 * 295.03049 * 1 2 3
32 32 H 1.09004 * 109.47291 * 55.02906 * 1 2 3
33 33 H 1.08998 * 109.47047 * 175.03532 * 1 2 3
34 34 H 0.96998 * 119.99936 * 179.97438 * 7 6 4
35 35 H 1.09001 * 109.47242 * 59.99884 * 15 13 12
36 36 H 1.09004 * 109.47145 * 299.99360 * 15 13 12
37 37 H 1.08993 * 109.47221 * 59.99446 * 16 15 13
38 38 H 1.09004 * 109.46590 * 299.99652 * 16 15 13
39 39 H 1.09001 * 109.47150 * 59.99784 * 17 16 15
40 40 H 1.08999 * 109.47442 * 299.99988 * 17 16 15
41 41 H 1.08994 * 109.47151 * 60.00398 * 18 17 16
42 42 H 1.09001 * 109.47585 * 299.99761 * 18 17 16
43 43 H 1.08993 * 110.76549 * 152.98611 * 22 21 19
44 44 H 1.09011 * 110.76129 * 276.19259 * 22 21 19
45 45 H 0.96998 * 125.33520 * 60.11489 * 25 23 22
46 46 H 0.96992 * 125.47773 * 179.97438 * 28 26 25
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 6 2.0323 -0.7103 -1.2306
5 1 2.1355 -1.7854 -1.2292
6 6 2.3601 0.0122 -2.3581
7 7 2.7058 -0.6130 -3.4623
8 14 2.3133 1.8792 -2.3174
9 1 3.5989 2.3951 -1.7823
10 1 2.1053 2.3992 -3.6928
11 1 1.1984 2.3275 -1.4450
12 8 2.0141 -0.6845 1.1854
13 6 2.2172 0.0640 2.2811
14 8 1.9982 1.2519 2.2504
15 6 2.7184 -0.5773 3.5493
16 6 2.8625 0.4887 4.6374
17 6 3.3707 -0.1624 5.9252
18 6 3.5154 0.9037 7.0130
19 6 4.0243 0.2526 8.3008
20 1 4.9665 -0.2659 8.1236
21 16 2.7664 -0.8982 8.9906
22 6 3.3421 -0.7316 10.7293
23 6 3.7959 0.7396 10.8016
24 1 4.6268 0.8443 11.4993
25 7 2.6553 1.5762 11.2147
26 6 2.4015 2.4784 10.2570
27 8 1.5089 3.2999 10.3394
28 7 3.2205 2.3925 9.1999
29 6 4.1787 1.2985 9.4226
30 1 5.1972 1.6864 9.4392
31 1 -0.3633 0.4348 0.9312
32 1 -0.3634 0.5890 -0.8421
33 1 -0.3633 -1.0238 -0.0889
34 1 2.9361 -0.1046 -4.2557
35 1 3.6873 -1.0409 3.3638
36 1 2.0089 -1.3370 3.8773
37 1 1.8935 0.9520 4.8228
38 1 3.5718 1.2487 4.3097
39 1 4.3397 -0.6260 5.7401
40 1 2.6612 -0.9222 6.2528
41 1 2.5467 1.3675 7.1983
42 1 4.2252 1.6632 6.6854
43 1 2.5254 -0.9187 11.4264
44 1 4.1776 -1.4037 10.9258
45 1 2.1674 1.4877 12.0484
46 1 3.1869 2.9603 8.4142
RHF calculation, no. of doubly occupied orbitals= 62
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000733710346.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:33:27
Heat of formation + Delta-G solvation = -144.683318 kcal
Electronic energy + Delta-G solvation = -27075.024956 eV
Core-core repulsion = 23089.563961 eV
Total energy + Delta-G solvation = -3985.460995 eV
No. of doubly occupied orbitals = 62
Molecular weight
(most abundant/longest-lived isotopes) = 342.145 amu
Computer time = 0.68 seconds
Orbital eigenvalues (eV)
-42.27304 -41.34097 -38.33701 -37.85182 -36.78018 -35.18887 -34.67869 -33.31888
-32.61711 -31.62502 -28.85837 -27.49288 -26.45957 -24.44601 -23.29498 -22.72445
-21.80394 -21.52813 -21.09979 -19.38714 -19.10113 -18.40191 -17.80518 -17.41761
-17.25853 -17.20694 -16.86762 -16.42289 -16.10749 -15.81472 -15.62320 -14.99814
-14.89135 -14.73525 -14.46265 -14.38399 -14.05705 -13.90174 -13.63936 -13.56740
-13.13230 -13.05100 -12.94161 -12.90613 -12.66928 -12.58897 -12.07558 -12.05405
-11.98022 -11.95874 -11.57887 -11.46642 -11.42013 -11.32916 -11.14454 -11.06499
-10.89251 -10.30153 -9.92159 -8.66475 -8.48592 -6.58289 0.86094 1.23568
1.27090 1.34515 1.36327 1.37909 1.82145 2.01965 2.09386 2.18066
2.89298 2.98059 3.21114 3.33836 3.68438 3.77155 3.86501 4.00195
4.03848 4.12734 4.21376 4.26645 4.37460 4.50331 4.53458 4.55490
4.60028 4.62947 4.71359 4.75503 4.79565 4.80548 4.87028 4.93065
4.96023 5.16133 5.27628 5.35544 5.37020 5.45246 5.70556 5.97153
6.16961 6.25053 6.38259 6.49985 6.93941 7.10803 7.58027 8.66731
Molecular weight = 342.14amu
Principal moments of inertia in cm(-1)
A = 0.023249 B = 0.001895 C = 0.001835
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1204.044820 B =14768.526964 C =15258.610108
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.147 4.147
2 C 0.181 3.819
3 H 0.036 0.964
4 C -0.531 4.531
5 H 0.048 0.952
6 C 0.034 3.966
7 N -0.922 5.922
8 Si 0.930 3.070
9 H -0.267 1.267
10 H -0.266 1.266
11 H -0.254 1.254
12 O -0.364 6.364
13 C 0.441 3.559
14 O -0.556 6.556
15 C -0.107 4.107
16 C -0.101 4.101
17 C -0.107 4.107
18 C -0.103 4.103
19 C -0.029 4.029
20 H 0.138 0.862
21 S -0.348 6.348
22 C -0.070 4.070
23 C 0.126 3.874
24 H 0.150 0.850
25 N -0.725 5.725
26 C 0.694 3.306
27 O -0.647 6.647
28 N -0.724 5.724
29 C 0.121 3.879
30 H 0.146 0.854
31 H 0.045 0.955
32 H 0.063 0.937
33 H 0.061 0.939
34 H 0.276 0.724
35 H 0.124 0.876
36 H 0.118 0.882
37 H 0.052 0.948
38 H 0.067 0.933
39 H 0.087 0.913
40 H 0.061 0.939
41 H 0.058 0.942
42 H 0.097 0.903
43 H 0.113 0.887
44 H 0.132 0.868
45 H 0.435 0.565
46 H 0.433 0.567
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 9.542 0.445 34.853 36.139
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.205 4.205
2 C 0.127 3.873
3 H 0.054 0.946
4 C -0.569 4.569
5 H 0.066 0.934
6 C -0.167 4.167
7 N -0.560 5.560
8 Si 0.753 3.247
9 H -0.192 1.192
10 H -0.191 1.191
11 H -0.178 1.178
12 O -0.280 6.280
13 C 0.287 3.713
14 O -0.448 6.448
15 C -0.144 4.144
16 C -0.138 4.138
17 C -0.145 4.145
18 C -0.141 4.141
19 C -0.158 4.158
20 H 0.155 0.845
21 S -0.122 6.122
22 C -0.219 4.219
23 C 0.019 3.981
24 H 0.167 0.833
25 N -0.387 5.387
26 C 0.392 3.608
27 O -0.529 6.529
28 N -0.386 5.386
29 C 0.014 3.986
30 H 0.163 0.837
31 H 0.064 0.936
32 H 0.082 0.918
33 H 0.080 0.920
34 H 0.086 0.914
35 H 0.142 0.858
36 H 0.136 0.864
37 H 0.071 0.929
38 H 0.085 0.915
39 H 0.106 0.894
40 H 0.079 0.921
41 H 0.077 0.923
42 H 0.116 0.884
43 H 0.131 0.869
44 H 0.151 0.849
45 H 0.278 0.722
46 H 0.277 0.723
Dipole moment (debyes) X Y Z Total
from point charges 8.185 0.524 34.128 35.099
hybrid contribution 0.179 1.425 -0.330 1.474
sum 8.364 1.949 33.798 34.872
Atomic orbital electron populations
1.22143 0.95649 1.02133 1.00569 1.20777 0.92841 0.92995 0.80668
0.94580 1.20920 1.45909 0.94886 0.95143 0.93376 1.25670 0.93115
1.03305 0.94626 1.69956 1.45325 1.38226 1.02481 0.86003 0.80135
0.80033 0.78558 1.19233 1.19058 1.17809 1.86627 1.76083 1.44020
1.21313 1.24815 0.73632 0.85967 0.86908 1.90560 1.50488 1.18462
1.85297 1.21563 1.04898 1.00346 0.87641 1.21354 1.01944 0.96886
0.93644 1.21507 1.02505 0.97835 0.92637 1.21460 1.02150 0.98550
0.91982 1.24492 0.99429 0.95060 0.96838 0.84453 1.88839 1.49403
1.63879 1.10038 1.24730 1.05664 0.97904 0.93602 1.22788 0.90316
0.89040 0.95920 0.83250 1.45313 1.36815 1.35077 1.21505 1.16240
0.81354 0.81315 0.81856 1.90968 1.36895 1.43165 1.81922 1.45336
1.35121 1.37155 1.20971 1.22858 0.96345 0.87329 0.92082 0.83650
0.93598 0.91782 0.91966 0.91417 0.85805 0.86402 0.92929 0.91465
0.89430 0.92070 0.92297 0.88434 0.86859 0.84938 0.72164 0.72334
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -6.62 9.53 71.98 0.69 -5.93 16
2 C 0.18 9.25 2.22 29.85 0.07 9.31 16
3 H 0.04 1.91 4.31 -2.38 -0.01 1.90 16
4 C -0.53 -31.14 9.24 25.60 0.24 -30.90 16
5 H 0.05 3.09 8.06 -2.91 -0.02 3.07 16
6 C 0.03 1.96 5.47 84.65 0.46 2.43 16
7 N -0.92 -55.96 13.96 21.44 0.30 -55.66 16
8 Si 0.93 44.52 26.99 68.60 1.85 46.37 16
9 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16
10 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16
11 H -0.25 -11.80 6.82 99.48 0.68 -11.12 16
12 O -0.36 -16.90 9.86 -51.48 -0.51 -17.41 16
13 C 0.44 17.23 7.93 71.23 0.56 17.79 16
14 O -0.56 -24.62 15.20 21.95 0.33 -24.29 16
15 C -0.11 -2.71 5.81 29.85 0.17 -2.53 16
16 C -0.10 -2.15 4.50 30.59 0.14 -2.02 16
17 C -0.11 -1.51 5.07 30.59 0.16 -1.36 16
18 C -0.10 -1.11 3.79 30.59 0.12 -1.00 16
19 C -0.03 -0.19 3.25 30.98 0.10 -0.09 16
20 H 0.14 0.27 8.14 -2.39 -0.02 0.25 16
21 S -0.35 -4.44 21.75 -56.49 -1.23 -5.67 16
22 C -0.07 -0.24 7.08 72.36 0.51 0.27 16
23 C 0.13 0.30 4.21 45.43 0.19 0.49 16
24 H 0.15 -0.71 8.14 -2.39 -0.02 -0.73 16
25 N -0.73 -7.08 5.94 -454.95 -2.70 -9.78 16
26 C 0.69 13.06 8.92 179.54 1.60 14.66 16
27 O -0.65 -19.87 18.05 -4.00 -0.07 -19.95 16
28 N -0.72 -8.60 4.86 -455.40 -2.21 -10.82 16
29 C 0.12 0.48 4.00 45.48 0.18 0.66 16
30 H 0.15 -0.36 8.14 -2.39 -0.02 -0.38 16
31 H 0.04 1.88 8.14 -2.38 -0.02 1.86 16
32 H 0.06 2.80 8.14 -2.38 -0.02 2.78 16
33 H 0.06 2.69 8.14 -2.39 -0.02 2.67 16
34 H 0.28 15.46 8.31 -92.71 -0.77 14.69 16
35 H 0.12 2.61 8.14 -2.39 -0.02 2.59 16
36 H 0.12 2.57 8.14 -2.39 -0.02 2.56 16
37 H 0.05 1.32 8.10 -2.39 -0.02 1.30 16
38 H 0.07 1.51 8.10 -2.39 -0.02 1.49 16
39 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16
40 H 0.06 1.01 7.31 -2.39 -0.02 0.99 16
41 H 0.06 0.94 7.10 -2.39 -0.02 0.92 16
42 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16
43 H 0.11 0.44 8.07 -2.39 -0.02 0.42 16
44 H 0.13 -0.22 8.14 -2.38 -0.02 -0.24 16
45 H 0.44 3.22 8.96 -92.71 -0.83 2.39 16
46 H 0.43 5.10 7.93 -92.71 -0.74 4.36 16
Total: -1.00 -85.51 384.49 0.36 -85.15
By element:
Atomic # 1 Polarization: 10.85 SS G_CDS: -0.58 Total: 10.27 kcal
Atomic # 6 Polarization: -3.40 SS G_CDS: 5.19 Total: 1.79 kcal
Atomic # 7 Polarization: -71.64 SS G_CDS: -4.62 Total: -76.26 kcal
Atomic # 8 Polarization: -61.40 SS G_CDS: -0.25 Total: -61.64 kcal
Atomic # 14 Polarization: 44.52 SS G_CDS: 1.85 Total: 46.37 kcal
Atomic # 16 Polarization: -4.44 SS G_CDS: -1.23 Total: -5.67 kcal
Total: -85.51 0.36 -85.15 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000733710346.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -59.537 kcal
(2) G-P(sol) polarization free energy of solvation -85.510 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.047 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.364 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.146 kcal
(6) G-S(sol) free energy of system = (1) + (5) -144.683 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.68 seconds