Wall clock time and date at job start Sat Apr 11 2020 06:34:29
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50705 * 1
3 3 O 1.21280 * 120.00095 * 2 1
4 4 N 1.34773 * 119.99741 * 180.02562 * 2 1 3
5 5 C 1.47154 * 121.06902 * 0.02562 * 4 2 1
6 6 C 1.53276 * 108.55266 * 128.88938 * 5 4 2
7 7 H 1.09000 * 109.55879 * 292.96187 * 6 5 4
8 8 C 1.53001 * 109.51370 * 172.83016 * 6 5 4
9 9 O 1.43099 * 109.21886 * 52.90814 * 6 5 4
10 10 C 1.42062 * 114.33616 * 298.84098 * 9 6 5
11 11 C 1.54491 * 110.38238 * 182.82752 * 10 9 6
12 12 C 1.55256 * 101.43611 * 83.74912 * 11 10 9
13 13 N 1.47480 * 104.78382 * 36.66427 * 12 11 10
14 14 C 1.34784 * 125.66089 * 155.91904 * 13 12 11
15 15 O 1.21279 * 119.99925 * 179.69417 * 14 13 12
16 16 C 1.50700 * 119.99961 * 359.69649 * 14 13 12
17 17 S 1.80996 * 109.47240 * 179.97438 * 16 14 13
18 18 C 1.76200 * 100.00090 * 179.97438 * 17 16 14
19 19 H 1.07999 * 120.00086 * 0.02562 * 18 17 16
20 20 C 1.38796 * 120.00048 * 179.97438 * 18 17 16
21 21 N 1.31626 * 119.99898 * 0.02562 * 20 18 17
22 22 Si 1.86804 * 119.99937 * 180.02562 * 20 18 17
23 23 H 1.48505 * 109.46972 * 90.00428 * 22 20 18
24 24 H 1.48495 * 109.47015 * 209.99998 * 22 20 18
25 25 H 1.48496 * 109.47365 * 330.00140 * 22 20 18
26 26 C 1.47178 * 108.67917 * 335.65845 * 13 12 11
27 27 C 1.47312 * 121.06148 * 180.02562 * 4 2 1
28 28 H 1.09005 * 109.46847 * 239.99772 * 1 2 3
29 29 H 1.08995 * 109.46743 * 359.97438 * 1 2 3
30 30 H 1.08996 * 109.47087 * 119.99590 * 1 2 3
31 31 H 1.09005 * 109.62504 * 9.17277 * 5 4 2
32 32 H 1.08998 * 109.62623 * 248.61218 * 5 4 2
33 33 H 1.08995 * 109.47069 * 300.25700 * 8 6 5
34 34 H 1.09002 * 109.47292 * 60.25710 * 8 6 5
35 35 H 1.09006 * 109.47097 * 180.26137 * 8 6 5
36 36 H 1.09007 * 111.00992 * 201.98712 * 11 10 9
37 37 H 1.08993 * 111.01187 * 325.81795 * 11 10 9
38 38 H 1.09008 * 110.48966 * 277.80841 * 12 11 10
39 39 H 1.08994 * 110.33043 * 155.44673 * 12 11 10
40 40 H 1.09004 * 109.46932 * 300.00223 * 16 14 13
41 41 H 1.08997 * 109.47392 * 59.99562 * 16 14 13
42 42 H 0.97005 * 120.00078 * 180.02562 * 21 20 18
43 43 H 1.09000 * 109.90940 * 121.10908 * 26 13 12
44 44 H 1.08993 * 109.91095 * 242.37851 * 26 13 12
45 45 H 1.08993 * 109.67717 * 109.63089 * 27 4 2
46 46 H 1.09003 * 109.67641 * 349.08544 * 27 4 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 8 2.1135 1.0503 0.0000
4 7 2.1809 -1.1672 -0.0005
5 6 1.4689 -2.4551 -0.0017
6 6 2.0319 -3.3225 -1.1331
7 1 1.7757 -2.8787 -2.0951
8 6 1.4356 -4.7287 -1.0440
9 8 3.4551 -3.3979 -1.0053
10 6 4.1184 -2.1450 -1.0981
11 6 5.6490 -2.3394 -1.0195
12 6 5.9916 -2.6846 -2.4939
13 7 5.0832 -1.8458 -3.2977
14 6 5.2955 -1.4529 -4.5694
15 8 4.4734 -0.7651 -5.1368
16 6 6.5544 -1.8683 -5.2861
17 16 6.5454 -1.1893 -6.9639
18 6 8.0848 -1.8113 -7.5539
19 1 8.7051 -2.4168 -6.9098
20 6 8.4996 -1.5240 -8.8469
21 7 7.7433 -0.7865 -9.6322
22 14 10.1313 -2.1841 -9.4727
23 1 9.9193 -3.5126 -10.1016
24 1 10.6927 -1.2451 -10.4767
25 1 11.0788 -2.3194 -8.3373
26 6 3.9033 -1.5140 -2.4828
27 6 3.6537 -1.1946 0.0000
28 1 -0.3633 -0.5139 0.8900
29 1 -0.3632 1.0276 0.0005
30 1 -0.3633 -0.5138 -0.8900
31 1 0.4048 -2.2850 -0.1656
32 1 1.6191 -2.9573 0.9540
33 1 1.6906 -5.1712 -0.0811
34 1 0.3515 -4.6705 -1.1414
35 1 1.8399 -5.3463 -1.8461
36 1 6.1440 -1.4208 -0.7042
37 1 5.9045 -3.1659 -0.3564
38 1 5.8068 -3.7406 -2.6914
39 1 7.0301 -2.4338 -2.7101
40 1 7.4220 -1.4901 -4.7453
41 1 6.6026 -2.9561 -5.3350
42 1 8.0331 -0.5861 -10.5360
43 1 3.8104 -0.4322 -2.3873
44 1 3.0060 -1.9270 -2.9435
45 1 4.0139 -1.5468 0.9666
46 1 4.0395 -0.1936 -0.1935
RHF calculation, no. of doubly occupied orbitals= 62
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001681442850.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:34:29
Heat of formation + Delta-G solvation = -129.343577 kcal
Electronic energy + Delta-G solvation = -28447.117105 eV
Core-core repulsion = 24462.321291 eV
Total energy + Delta-G solvation = -3984.795814 eV
No. of doubly occupied orbitals = 62
Molecular weight
(most abundant/longest-lived isotopes) = 342.145 amu
Computer time = 0.85 seconds
Orbital eigenvalues (eV)
-42.18106 -40.74918 -39.73613 -37.79269 -35.90813 -34.60914 -34.31795 -31.94246
-31.37348 -30.99823 -29.48759 -27.79651 -27.53903 -26.50419 -24.46145 -22.88509
-21.46817 -20.90105 -20.06374 -19.63612 -18.39407 -18.23979 -18.16496 -17.23147
-16.90582 -16.83628 -16.73617 -16.44348 -15.95135 -15.82607 -15.41727 -15.27367
-14.82803 -14.57001 -14.39663 -14.26872 -13.95296 -13.76138 -13.55340 -13.40913
-13.20160 -13.17655 -13.07922 -13.02286 -12.89934 -12.82587 -12.64391 -12.57571
-12.31857 -12.26353 -11.76581 -11.74012 -11.18835 -11.15924 -11.06553 -10.91630
-10.32009 -9.86044 -9.65775 -8.71864 -8.36391 -6.16108 1.18655 1.42099
1.42139 1.45705 1.50177 1.54998 1.80870 1.97224 2.25197 2.40525
2.97836 3.13066 3.29592 3.33340 3.43798 3.61996 3.72563 3.81523
3.92692 4.05828 4.14779 4.17919 4.25227 4.29833 4.34247 4.38286
4.44610 4.48122 4.52267 4.55171 4.59946 4.67300 4.74993 4.87300
4.89029 5.01109 5.04130 5.05234 5.18372 5.25907 5.33180 5.39811
6.09600 6.17975 6.24794 6.26252 6.99556 7.02746 7.04422 8.73122
Molecular weight = 342.14amu
Principal moments of inertia in cm(-1)
A = 0.019906 B = 0.002441 C = 0.002351
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1406.281986 B =11468.614716 C =11906.554777
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.168 4.168
2 C 0.503 3.497
3 O -0.598 6.598
4 N -0.620 5.620
5 C 0.080 3.920
6 C 0.058 3.942
7 H 0.047 0.953
8 C -0.136 4.136
9 O -0.358 6.358
10 C 0.108 3.892
11 C -0.105 4.105
12 C 0.092 3.908
13 N -0.615 5.615
14 C 0.544 3.456
15 O -0.570 6.570
16 C -0.117 4.117
17 S -0.154 6.154
18 C -0.544 4.544
19 H 0.085 0.915
20 C 0.012 3.988
21 N -0.912 5.912
22 Si 1.002 2.998
23 H -0.267 1.267
24 H -0.278 1.278
25 H -0.256 1.256
26 C 0.091 3.909
27 C 0.097 3.903
28 H 0.122 0.878
29 H 0.087 0.913
30 H 0.107 0.893
31 H 0.126 0.874
32 H 0.103 0.897
33 H 0.079 0.921
34 H 0.098 0.902
35 H 0.055 0.945
36 H 0.106 0.894
37 H 0.130 0.870
38 H 0.085 0.915
39 H 0.095 0.905
40 H 0.110 0.890
41 H 0.109 0.891
42 H 0.272 0.728
43 H 0.050 0.950
44 H 0.057 0.943
45 H 0.107 0.893
46 H 0.082 0.918
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -12.868 -10.805 28.292 32.906
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.227 4.227
2 C 0.294 3.706
3 O -0.479 6.479
4 N -0.354 5.354
5 C -0.042 4.042
6 C 0.000 4.000
7 H 0.065 0.935
8 C -0.193 4.193
9 O -0.277 6.277
10 C 0.067 3.933
11 C -0.143 4.143
12 C -0.029 4.029
13 N -0.350 5.350
14 C 0.333 3.667
15 O -0.449 6.449
16 C -0.268 4.268
17 S 0.073 5.927
18 C -0.692 4.692
19 H 0.103 0.897
20 C -0.193 4.193
21 N -0.549 5.549
22 Si 0.823 3.177
23 H -0.192 1.192
24 H -0.203 1.203
25 H -0.180 1.180
26 C -0.032 4.032
27 C -0.026 4.026
28 H 0.140 0.860
29 H 0.106 0.894
30 H 0.125 0.875
31 H 0.144 0.856
32 H 0.121 0.879
33 H 0.098 0.902
34 H 0.116 0.884
35 H 0.074 0.926
36 H 0.124 0.876
37 H 0.148 0.852
38 H 0.104 0.896
39 H 0.113 0.887
40 H 0.128 0.872
41 H 0.127 0.873
42 H 0.080 0.920
43 H 0.068 0.932
44 H 0.076 0.924
45 H 0.125 0.875
46 H 0.100 0.900
Dipole moment (debyes) X Y Z Total
from point charges -13.706 -9.315 27.265 31.907
hybrid contribution 1.509 -0.326 -0.556 1.641
sum -12.197 -9.642 26.709 30.905
Atomic orbital electron populations
1.21990 0.87986 1.06220 1.06471 1.21715 0.92516 0.82239 0.74090
1.90723 1.72097 1.32901 1.52149 1.48403 1.06660 1.07009 1.73298
1.22770 0.98764 0.82145 1.00489 1.22800 0.80757 0.99008 0.97448
0.93464 1.21719 1.01608 0.92280 1.03723 1.87884 1.19527 1.27265
1.93019 1.22072 0.95393 0.85037 0.90826 1.22870 0.89870 1.05740
0.95828 1.22760 0.94601 0.95330 0.90206 1.48471 1.22639 1.52341
1.11568 1.19936 0.87331 0.78933 0.80546 1.90684 1.47887 1.39690
1.66607 1.23284 0.98158 1.05343 0.99986 1.85646 1.29594 1.69922
1.07508 1.23180 1.05538 1.38340 1.02153 0.89726 1.26179 1.02457
0.94861 0.95758 1.70193 1.39407 1.36885 1.08402 0.84908 0.76484
0.78067 0.78231 1.19176 1.20310 1.18030 1.22453 0.88917 0.99481
0.92339 1.22084 0.80807 1.00257 0.99450 0.85997 0.89450 0.87476
0.85650 0.87862 0.90204 0.88369 0.92574 0.87564 0.85216 0.89646
0.88711 0.87171 0.87301 0.91952 0.93159 0.92439 0.87484 0.89963
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -1.63 8.69 71.24 0.62 -1.01 16
2 C 0.50 9.98 7.82 87.66 0.69 10.67 16
3 O -0.60 -18.46 16.57 -3.03 -0.05 -18.51 16
4 N -0.62 -9.69 2.94 -818.51 -2.41 -12.09 16
5 C 0.08 0.64 5.81 86.35 0.50 1.14 16
6 C 0.06 0.72 3.17 30.69 0.10 0.82 16
7 H 0.05 0.81 6.22 -2.39 -0.01 0.80 16
8 C -0.14 -1.03 9.57 71.98 0.69 -0.34 16
9 O -0.36 -5.90 9.90 -148.97 -1.47 -7.38 16
10 C 0.11 1.96 0.80 -10.23 -0.01 1.95 16
11 C -0.11 -1.49 6.22 31.88 0.20 -1.29 16
12 C 0.09 1.88 6.70 86.97 0.58 2.46 16
13 N -0.62 -19.02 3.33 -811.82 -2.70 -21.72 16
14 C 0.54 22.72 7.87 87.66 0.69 23.41 16
15 O -0.57 -29.44 16.19 -3.03 -0.05 -29.48 16
16 C -0.12 -4.95 5.16 71.24 0.37 -4.58 16
17 S -0.15 -8.88 20.57 -56.49 -1.16 -10.04 16
18 C -0.54 -31.60 9.50 67.95 0.65 -30.96 16
19 H 0.08 4.53 7.80 -2.91 -0.02 4.51 16
20 C 0.01 0.70 5.49 84.86 0.47 1.16 16
21 N -0.91 -56.98 13.22 21.65 0.29 -56.69 16
22 Si 1.00 43.97 29.55 68.60 2.03 46.00 16
23 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16
24 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16
25 H -0.26 -10.51 7.11 99.48 0.71 -9.80 16
26 C 0.09 2.55 5.96 86.48 0.52 3.06 16
27 C 0.10 1.65 5.20 86.05 0.45 2.10 16
28 H 0.12 0.37 8.01 -2.38 -0.02 0.35 16
29 H 0.09 1.01 8.12 -2.39 -0.02 0.99 16
30 H 0.11 0.68 7.67 -2.39 -0.02 0.66 16
31 H 0.13 0.31 6.05 -2.38 -0.01 0.29 16
32 H 0.10 0.47 8.14 -2.39 -0.02 0.45 16
33 H 0.08 0.44 8.14 -2.39 -0.02 0.42 16
34 H 0.10 0.30 8.14 -2.39 -0.02 0.28 16
35 H 0.06 0.62 8.14 -2.38 -0.02 0.60 16
36 H 0.11 1.32 8.01 -2.38 -0.02 1.30 16
37 H 0.13 1.13 8.14 -2.39 -0.02 1.11 16
38 H 0.09 1.62 8.14 -2.38 -0.02 1.60 16
39 H 0.09 1.75 7.48 -2.39 -0.02 1.73 16
40 H 0.11 4.19 7.86 -2.39 -0.02 4.17 16
41 H 0.11 4.17 8.14 -2.40 -0.02 4.15 16
42 H 0.27 15.69 8.31 -92.70 -0.77 14.92 16
43 H 0.05 1.65 7.61 -2.39 -0.02 1.64 16
44 H 0.06 1.73 6.00 -2.39 -0.01 1.72 16
45 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16
46 H 0.08 1.84 6.83 -2.39 -0.02 1.82 16
Total: -1.00 -89.95 382.70 1.94 -88.00
By element:
Atomic # 1 Polarization: 12.33 SS G_CDS: 0.98 Total: 13.31 kcal
Atomic # 6 Polarization: 2.10 SS G_CDS: 6.50 Total: 8.60 kcal
Atomic # 7 Polarization: -85.68 SS G_CDS: -4.83 Total: -90.51 kcal
Atomic # 8 Polarization: -53.80 SS G_CDS: -1.57 Total: -55.38 kcal
Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 46.00 kcal
Atomic # 16 Polarization: -8.88 SS G_CDS: -1.16 Total: -10.04 kcal
Total: -89.95 1.94 -88.00 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001681442850.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -41.339 kcal
(2) G-P(sol) polarization free energy of solvation -89.950 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.288 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.945 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.005 kcal
(6) G-S(sol) free energy of system = (1) + (5) -129.344 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.85 seconds