Wall clock time and date at job start Sat Apr 11 2020 06:32:28
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52996 * 1
3 3 H 1.09002 * 110.33404 * 2 1
4 4 O 1.44422 * 110.37389 * 237.62886 * 2 1 3
5 5 C 1.44424 * 105.27756 * 200.65608 * 4 2 1
6 6 C 1.54478 * 104.80145 * 40.51388 * 5 4 2
7 7 C 1.54480 * 110.37348 * 122.24822 * 2 1 3
8 8 H 1.09003 * 110.51245 * 261.58772 * 7 2 1
9 9 C 1.50695 * 110.51444 * 24.16518 * 7 2 1
10 10 O 1.21281 * 120.00163 * 91.13679 * 9 7 2
11 11 N 1.34781 * 119.99760 * 271.14526 * 9 7 2
12 12 C 1.46502 * 119.99582 * 179.97438 * 11 9 7
13 13 C 1.53001 * 109.46949 * 174.95945 * 12 11 9
14 14 N 1.46506 * 115.55030 * 83.33217 * 13 12 11
15 15 C 1.34779 * 119.99548 * 64.50021 * 14 13 12
16 16 O 1.21279 * 120.00567 * 355.40080 * 15 14 13
17 17 C 1.50700 * 119.99428 * 175.40467 * 15 14 13
18 18 S 1.81005 * 109.47093 * 179.97438 * 17 15 14
19 19 C 1.76200 * 100.00194 * 179.97438 * 18 17 15
20 20 H 1.08004 * 120.00083 * 359.97438 * 19 18 17
21 21 C 1.38801 * 119.99845 * 180.02562 * 19 18 17
22 22 N 1.31623 * 119.99866 * 359.97438 * 21 19 18
23 23 Si 1.86800 * 119.99897 * 179.72434 * 21 19 18
24 24 H 1.48504 * 109.47169 * 270.27480 * 23 21 19
25 25 H 1.48511 * 109.47091 * 30.27185 * 23 21 19
26 26 H 1.48495 * 109.47113 * 150.27150 * 23 21 19
27 27 C 1.53003 * 117.50150 * 229.00553 * 13 12 11
28 28 C 1.52999 * 117.49897 * 297.66358 * 13 12 11
29 29 H 1.09005 * 109.46863 * 300.48694 * 1 2 3
30 30 H 1.08997 * 109.47134 * 60.48868 * 1 2 3
31 31 H 1.09007 * 109.47229 * 180.49131 * 1 2 3
32 32 H 1.09008 * 110.37141 * 159.34197 * 5 4 2
33 33 H 1.08999 * 110.37001 * 281.56564 * 5 4 2
34 34 H 1.09009 * 110.50600 * 217.37757 * 6 5 4
35 35 H 1.08994 * 110.51207 * 94.66922 * 6 5 4
36 36 H 0.96994 * 120.00043 * 359.97438 * 11 9 7
37 37 H 1.08995 * 109.47172 * 54.96066 * 12 11 9
38 38 H 1.09004 * 109.46958 * 294.95247 * 12 11 9
39 39 H 0.96997 * 119.99831 * 244.49852 * 14 13 12
40 40 H 1.09006 * 109.47611 * 59.99895 * 17 15 14
41 41 H 1.08999 * 109.47289 * 299.99647 * 17 15 14
42 42 H 0.97001 * 120.00672 * 359.71922 * 22 21 19
43 43 H 1.08994 * 117.49676 * 215.00536 * 27 13 12
44 44 H 1.08998 * 117.49553 * 0.02562 * 27 13 12
45 45 H 1.09003 * 117.49855 * 359.97438 * 28 13 12
46 46 H 1.09001 * 117.50034 * 144.97244 * 28 13 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.9087 1.0221 0.0000
4 8 2.0328 -0.7249 -1.1435
5 6 3.3873 -1.0880 -0.7983
6 6 3.3177 -1.5050 0.6875
7 6 2.0678 -0.7727 1.2248
8 1 2.3408 -0.0819 2.0225
9 6 1.0445 -1.7647 1.7143
10 8 1.0487 -2.9004 1.2886
11 7 0.1244 -1.3898 2.6251
12 6 -0.8707 -2.3541 3.1006
13 6 -1.7080 -1.7171 4.2115
14 7 -2.8265 -0.8848 3.7615
15 6 -3.8506 -1.4410 3.0845
16 8 -3.8077 -2.6129 2.7750
17 6 -5.0491 -0.6068 2.7121
18 16 -6.2424 -1.6311 1.8160
19 6 -7.5037 -0.4384 1.5140
20 1 -7.3824 0.5762 1.8638
21 6 -8.6536 -0.8031 0.8276
22 7 -8.8017 -2.0397 0.4019
23 14 -9.9942 0.4595 0.5142
24 1 -10.9575 0.4497 1.6445
25 1 -9.3853 1.8087 0.3945
26 1 -10.7055 0.1238 -0.7453
27 6 -1.8977 -2.5184 5.5011
28 6 -0.9809 -1.2927 5.4891
29 1 -0.3633 0.5214 0.8856
30 1 -0.3633 0.5062 -0.8943
31 1 -0.3634 -1.0277 0.0088
32 1 3.7241 -1.9238 -1.4117
33 1 4.0528 -0.2338 -0.9238
34 1 4.2109 -1.1759 1.2187
35 1 3.1955 -2.5844 0.7759
36 1 0.1212 -0.4817 2.9657
37 1 -0.3640 -3.2376 3.4888
38 1 -1.5215 -2.6417 2.2748
39 1 -2.8300 0.0665 3.9508
40 1 -4.7326 0.2211 2.0774
41 1 -5.5137 -0.2141 3.6165
42 1 -8.1054 -2.6953 0.5642
43 1 -2.8547 -2.4263 6.0145
44 1 -1.4257 -3.4992 5.5581
45 1 0.0939 -1.4677 5.5383
46 1 -1.3345 -0.3940 5.9945
RHF calculation, no. of doubly occupied orbitals= 62
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001722095223.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:32:28
Heat of formation + Delta-G solvation = -98.396384 kcal
Electronic energy + Delta-G solvation = -27859.902609 eV
Core-core repulsion = 23876.448766 eV
Total energy + Delta-G solvation = -3983.453843 eV
No. of doubly occupied orbitals = 62
Molecular weight
(most abundant/longest-lived isotopes) = 342.145 amu
Computer time = 0.58 seconds
Orbital eigenvalues (eV)
-40.95236 -39.92806 -38.53190 -37.40210 -34.44048 -32.94252 -32.71332 -32.54779
-31.77589 -29.23804 -27.76995 -26.26439 -24.87057 -23.07570 -22.52258 -22.37995
-21.47217 -20.24450 -19.61005 -18.37370 -17.68365 -17.16149 -16.69906 -16.40984
-16.05070 -15.82449 -15.50276 -15.17898 -14.98918 -14.75776 -14.41566 -13.91242
-13.86757 -13.52106 -13.36865 -12.86060 -12.74626 -12.61933 -12.51257 -12.41730
-12.29297 -12.15590 -11.86130 -11.85019 -11.55908 -11.36763 -11.24029 -11.14796
-10.92664 -10.69914 -10.23242 -10.20728 -9.86259 -9.62442 -9.57715 -9.18186
-9.08739 -9.01520 -8.24829 -6.69676 -6.63985 -4.02420 2.39901 2.72033
2.78708 2.89025 3.30802 3.37191 3.40395 3.52555 3.54087 3.55377
4.06481 4.21794 4.24962 4.27927 4.45378 4.53122 4.62859 4.70869
4.76734 4.93256 4.93724 5.00460 5.08678 5.20536 5.22941 5.23629
5.25242 5.40821 5.43312 5.50323 5.52499 5.62035 5.64585 5.69923
5.76236 5.78916 5.87513 5.95181 5.97539 6.19725 6.49631 6.51974
7.25472 7.50172 7.89609 8.02300 8.43588 8.48149 9.24949 10.79940
Molecular weight = 342.14amu
Principal moments of inertia in cm(-1)
A = 0.012435 B = 0.002642 C = 0.002315
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2251.142425 B =10595.302545 C =12092.679951
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.157 4.157
2 C 0.088 3.912
3 H 0.080 0.920
4 O -0.363 6.363
5 C 0.047 3.953
6 C -0.144 4.144
7 C -0.143 4.143
8 H 0.103 0.897
9 C 0.526 3.474
10 O -0.529 6.529
11 N -0.725 5.725
12 C 0.149 3.851
13 C 0.090 3.910
14 N -0.709 5.709
15 C 0.534 3.466
16 O -0.504 6.504
17 C -0.131 4.131
18 S -0.113 6.113
19 C -0.608 4.608
20 H 0.066 0.934
21 C 0.035 3.965
22 N -0.883 5.883
23 Si 1.087 2.913
24 H -0.284 1.284
25 H -0.287 1.287
26 H -0.279 1.279
27 C -0.159 4.159
28 C -0.169 4.169
29 H 0.072 0.928
30 H 0.071 0.929
31 H 0.069 0.931
32 H 0.094 0.906
33 H 0.060 0.940
34 H 0.081 0.919
35 H 0.095 0.905
36 H 0.398 0.602
37 H 0.079 0.921
38 H 0.089 0.911
39 H 0.400 0.600
40 H 0.091 0.909
41 H 0.092 0.908
42 H 0.278 0.722
43 H 0.103 0.897
44 H 0.104 0.896
45 H 0.105 0.895
46 H 0.102 0.898
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 25.980 8.250 8.832 28.654
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.214 4.214
2 C 0.029 3.971
3 H 0.098 0.902
4 O -0.282 6.282
5 C -0.030 4.030
6 C -0.182 4.182
7 C -0.165 4.165
8 H 0.121 0.879
9 C 0.311 3.689
10 O -0.405 6.405
11 N -0.377 5.377
12 C 0.025 3.975
13 C 0.001 3.999
14 N -0.363 5.363
15 C 0.320 3.680
16 O -0.377 6.377
17 C -0.282 4.282
18 S 0.113 5.887
19 C -0.756 4.756
20 H 0.084 0.916
21 C -0.175 4.175
22 N -0.518 5.518
23 Si 0.913 3.087
24 H -0.211 1.211
25 H -0.213 1.213
26 H -0.205 1.205
27 C -0.198 4.198
28 C -0.207 4.207
29 H 0.091 0.909
30 H 0.090 0.910
31 H 0.088 0.912
32 H 0.112 0.888
33 H 0.078 0.922
34 H 0.099 0.901
35 H 0.114 0.886
36 H 0.232 0.768
37 H 0.097 0.903
38 H 0.108 0.892
39 H 0.235 0.765
40 H 0.110 0.890
41 H 0.110 0.890
42 H 0.091 0.909
43 H 0.122 0.878
44 H 0.123 0.877
45 H 0.123 0.877
46 H 0.121 0.879
Dipole moment (debyes) X Y Z Total
from point charges 24.413 5.573 7.102 26.029
hybrid contribution 1.446 2.398 1.684 3.267
sum 25.859 7.971 8.785 28.450
Atomic orbital electron populations
1.21968 0.92474 1.03855 1.03093 1.22879 0.95889 0.94793 0.83495
0.90222 1.89222 1.27076 1.74360 1.37537 1.23389 0.84661 0.99930
0.94992 1.22973 0.95893 1.03184 0.96142 1.22806 0.95854 0.97809
1.00055 0.87866 1.20145 0.81655 0.88657 0.78401 1.90731 1.72845
1.20602 1.56304 1.46037 1.32394 1.15150 1.44163 1.21083 0.89098
0.90683 0.96644 1.20659 0.91177 0.99761 0.88282 1.45392 1.20103
1.11152 1.59672 1.20336 0.82806 0.88239 0.76646 1.90719 1.79127
1.16513 1.51352 1.23315 0.97388 1.02906 1.04563 1.84879 1.15979
1.16789 1.71025 1.23719 1.06728 0.98298 1.46896 0.91609 1.26056
0.98765 1.00007 0.92715 1.70765 1.36291 1.02954 1.41752 0.83290
0.74622 0.73630 0.77157 1.21053 1.21303 1.20480 1.23368 1.01597
0.96264 0.98532 1.23327 0.99084 1.00041 0.98223 0.90948 0.90984
0.91182 0.88785 0.92193 0.90053 0.88611 0.76810 0.90315 0.89233
0.76468 0.89038 0.88969 0.90918 0.87845 0.87745 0.87653 0.87935
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -1.65 8.52 37.16 0.32 -1.33 16
2 C 0.09 0.81 3.83 -25.96 -0.10 0.71 16
3 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16
4 O -0.36 -4.34 11.34 -35.23 -0.40 -4.74 16
5 C 0.05 0.40 7.63 37.93 0.29 0.69 16
6 C -0.14 -1.15 6.61 -25.16 -0.17 -1.31 16
7 C -0.14 -1.17 3.43 -90.21 -0.31 -1.48 16
8 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16
9 C 0.53 6.01 4.90 -10.99 -0.05 5.96 16
10 O -0.53 -8.55 15.59 5.56 0.09 -8.46 16
11 N -0.73 -6.82 4.82 -60.29 -0.29 -7.11 16
12 C 0.15 1.80 5.62 -4.04 -0.02 1.78 16
13 C 0.09 0.92 1.78 -131.81 -0.23 0.69 16
14 N -0.71 -8.25 5.46 -47.60 -0.26 -8.51 16
15 C 0.53 9.28 7.67 -10.98 -0.08 9.20 16
16 O -0.50 -10.86 14.55 5.56 0.08 -10.78 16
17 C -0.13 -2.53 6.16 36.01 0.22 -2.31 16
18 S -0.11 -3.01 19.60 -107.50 -2.11 -5.11 16
19 C -0.61 -17.39 9.50 30.94 0.29 -17.09 16
20 H 0.07 1.80 7.80 -52.48 -0.41 1.39 16
21 C 0.04 1.02 5.49 -17.43 -0.10 0.93 16
22 N -0.88 -27.53 13.67 55.49 0.76 -26.78 16
23 Si 1.09 24.90 29.92 -169.99 -5.09 19.82 16
24 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16
25 H -0.29 -6.16 7.11 56.52 0.40 -5.76 16
26 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16
27 C -0.16 -1.53 10.11 -26.69 -0.27 -1.80 16
28 C -0.17 -1.13 10.05 -26.70 -0.27 -1.40 16
29 H 0.07 0.60 7.76 -51.93 -0.40 0.20 16
30 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16
31 H 0.07 0.98 6.86 -51.93 -0.36 0.62 16
32 H 0.09 0.74 8.14 -51.92 -0.42 0.32 16
33 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16
34 H 0.08 0.42 8.14 -51.92 -0.42 0.00 16
35 H 0.10 0.98 6.78 -51.93 -0.35 0.63 16
36 H 0.40 2.54 8.32 -40.82 -0.34 2.20 16
37 H 0.08 0.96 7.91 -51.93 -0.41 0.55 16
38 H 0.09 1.49 6.74 -51.93 -0.35 1.14 16
39 H 0.40 3.39 8.83 -40.82 -0.36 3.03 16
40 H 0.09 1.64 8.14 -51.91 -0.42 1.22 16
41 H 0.09 1.65 8.14 -51.92 -0.42 1.23 16
42 H 0.28 8.87 7.13 -40.82 -0.29 8.58 16
43 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16
44 H 0.10 0.95 8.06 -51.93 -0.42 0.53 16
45 H 0.11 0.58 8.14 -51.93 -0.42 0.16 16
46 H 0.10 0.56 8.14 -51.93 -0.42 0.13 16
LS Contribution 393.32 15.07 5.93 5.93
Total: -1.00 -38.10 393.32 -8.91 -47.01
By element:
Atomic # 1 Polarization: 12.67 SS G_CDS: -7.14 Total: 5.53 kcal
Atomic # 6 Polarization: -6.31 SS G_CDS: -0.48 Total: -6.79 kcal
Atomic # 7 Polarization: -42.60 SS G_CDS: 0.21 Total: -42.39 kcal
Atomic # 8 Polarization: -23.76 SS G_CDS: -0.23 Total: -23.99 kcal
Atomic # 14 Polarization: 24.90 SS G_CDS: -5.09 Total: 19.82 kcal
Atomic # 16 Polarization: -3.01 SS G_CDS: -2.11 Total: -5.11 kcal
Total LS contribution 5.93 Total: 5.93 kcal
Total: -38.10 -8.91 -47.01 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001722095223.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -51.388 kcal
(2) G-P(sol) polarization free energy of solvation -38.099 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.487 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.909 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.008 kcal
(6) G-S(sol) free energy of system = (1) + (5) -98.396 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.58 seconds