Wall clock time and date at job start Sat Apr 11 2020 06:32:28
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52996 * 1
3 3 H 1.09002 * 110.33404 * 2 1
4 4 O 1.44422 * 110.37389 * 237.62886 * 2 1 3
5 5 C 1.44424 * 105.27756 * 200.65608 * 4 2 1
6 6 C 1.54478 * 104.80145 * 40.51388 * 5 4 2
7 7 C 1.54480 * 110.37348 * 122.24822 * 2 1 3
8 8 H 1.09003 * 110.51245 * 261.58772 * 7 2 1
9 9 C 1.50695 * 110.51444 * 24.16518 * 7 2 1
10 10 O 1.21281 * 120.00163 * 91.13679 * 9 7 2
11 11 N 1.34781 * 119.99760 * 271.14526 * 9 7 2
12 12 C 1.46502 * 119.99582 * 179.97438 * 11 9 7
13 13 C 1.53001 * 109.46949 * 174.95945 * 12 11 9
14 14 N 1.46506 * 115.55030 * 83.33217 * 13 12 11
15 15 C 1.34779 * 119.99548 * 64.50021 * 14 13 12
16 16 O 1.21279 * 120.00567 * 355.40080 * 15 14 13
17 17 C 1.50700 * 119.99428 * 175.40467 * 15 14 13
18 18 S 1.81005 * 109.47093 * 179.97438 * 17 15 14
19 19 C 1.76200 * 100.00194 * 179.97438 * 18 17 15
20 20 H 1.08004 * 120.00083 * 359.97438 * 19 18 17
21 21 C 1.38801 * 119.99845 * 180.02562 * 19 18 17
22 22 N 1.31623 * 119.99866 * 359.97438 * 21 19 18
23 23 Si 1.86800 * 119.99897 * 179.72434 * 21 19 18
24 24 H 1.48504 * 109.47169 * 270.27480 * 23 21 19
25 25 H 1.48511 * 109.47091 * 30.27185 * 23 21 19
26 26 H 1.48495 * 109.47113 * 150.27150 * 23 21 19
27 27 C 1.53003 * 117.50150 * 229.00553 * 13 12 11
28 28 C 1.52999 * 117.49897 * 297.66358 * 13 12 11
29 29 H 1.09005 * 109.46863 * 300.48694 * 1 2 3
30 30 H 1.08997 * 109.47134 * 60.48868 * 1 2 3
31 31 H 1.09007 * 109.47229 * 180.49131 * 1 2 3
32 32 H 1.09008 * 110.37141 * 159.34197 * 5 4 2
33 33 H 1.08999 * 110.37001 * 281.56564 * 5 4 2
34 34 H 1.09009 * 110.50600 * 217.37757 * 6 5 4
35 35 H 1.08994 * 110.51207 * 94.66922 * 6 5 4
36 36 H 0.96994 * 120.00043 * 359.97438 * 11 9 7
37 37 H 1.08995 * 109.47172 * 54.96066 * 12 11 9
38 38 H 1.09004 * 109.46958 * 294.95247 * 12 11 9
39 39 H 0.96997 * 119.99831 * 244.49852 * 14 13 12
40 40 H 1.09006 * 109.47611 * 59.99895 * 17 15 14
41 41 H 1.08999 * 109.47289 * 299.99647 * 17 15 14
42 42 H 0.97001 * 120.00672 * 359.71922 * 22 21 19
43 43 H 1.08994 * 117.49676 * 215.00536 * 27 13 12
44 44 H 1.08998 * 117.49553 * 0.02562 * 27 13 12
45 45 H 1.09003 * 117.49855 * 359.97438 * 28 13 12
46 46 H 1.09001 * 117.50034 * 144.97244 * 28 13 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.9087 1.0221 0.0000
4 8 2.0328 -0.7249 -1.1435
5 6 3.3873 -1.0880 -0.7983
6 6 3.3177 -1.5050 0.6875
7 6 2.0678 -0.7727 1.2248
8 1 2.3408 -0.0819 2.0225
9 6 1.0445 -1.7647 1.7143
10 8 1.0487 -2.9004 1.2886
11 7 0.1244 -1.3898 2.6251
12 6 -0.8707 -2.3541 3.1006
13 6 -1.7080 -1.7171 4.2115
14 7 -2.8265 -0.8848 3.7615
15 6 -3.8506 -1.4410 3.0845
16 8 -3.8077 -2.6129 2.7750
17 6 -5.0491 -0.6068 2.7121
18 16 -6.2424 -1.6311 1.8160
19 6 -7.5037 -0.4384 1.5140
20 1 -7.3824 0.5762 1.8638
21 6 -8.6536 -0.8031 0.8276
22 7 -8.8017 -2.0397 0.4019
23 14 -9.9942 0.4595 0.5142
24 1 -10.9575 0.4497 1.6445
25 1 -9.3853 1.8087 0.3945
26 1 -10.7055 0.1238 -0.7453
27 6 -1.8977 -2.5184 5.5011
28 6 -0.9809 -1.2927 5.4891
29 1 -0.3633 0.5214 0.8856
30 1 -0.3633 0.5062 -0.8943
31 1 -0.3634 -1.0277 0.0088
32 1 3.7241 -1.9238 -1.4117
33 1 4.0528 -0.2338 -0.9238
34 1 4.2109 -1.1759 1.2187
35 1 3.1955 -2.5844 0.7759
36 1 0.1212 -0.4817 2.9657
37 1 -0.3640 -3.2376 3.4888
38 1 -1.5215 -2.6417 2.2748
39 1 -2.8300 0.0665 3.9508
40 1 -4.7326 0.2211 2.0774
41 1 -5.5137 -0.2141 3.6165
42 1 -8.1054 -2.6953 0.5642
43 1 -2.8547 -2.4263 6.0145
44 1 -1.4257 -3.4992 5.5581
45 1 0.0939 -1.4677 5.5383
46 1 -1.3345 -0.3940 5.9945
RHF calculation, no. of doubly occupied orbitals= 62
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001722095223.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:32:28
Heat of formation + Delta-G solvation = -128.990134 kcal
Electronic energy + Delta-G solvation = -27861.229253 eV
Core-core repulsion = 23876.448766 eV
Total energy + Delta-G solvation = -3984.780487 eV
No. of doubly occupied orbitals = 62
Molecular weight
(most abundant/longest-lived isotopes) = 342.145 amu
Computer time = 0.68 seconds
Orbital eigenvalues (eV)
-41.79499 -41.02807 -39.46596 -38.46888 -35.40420 -34.76249 -34.11813 -33.48843
-32.47530 -30.70633 -28.68193 -27.13088 -26.98589 -23.82080 -23.37686 -23.05520
-22.52459 -21.21442 -20.61028 -20.42991 -18.48216 -18.07565 -17.97046 -17.31768
-17.01461 -16.67865 -16.62152 -16.49142 -15.97297 -15.92117 -15.74132 -15.47093
-15.03589 -14.73641 -14.50507 -14.27869 -14.08339 -13.83771 -13.61256 -13.46140
-13.41746 -13.29257 -12.90840 -12.75676 -12.48377 -12.31358 -12.02820 -11.99554
-11.95102 -11.92920 -11.62520 -11.51737 -11.11862 -11.10099 -10.91368 -10.66418
-10.32787 -10.18409 -10.13179 -8.93700 -8.88297 -6.28895 1.16761 1.49842
1.50614 1.52363 1.60513 1.78312 1.96264 2.04435 2.33535 2.75470
2.88764 3.01472 3.11641 3.38228 3.43939 3.58853 3.72600 3.77205
3.84403 3.94460 4.08447 4.16191 4.17302 4.30152 4.32050 4.34560
4.43470 4.45755 4.54192 4.56684 4.69468 4.78503 4.82713 4.86060
4.91310 4.94359 5.09474 5.12220 5.14894 5.33077 5.45555 5.63089
5.87037 6.13066 6.41575 6.50057 7.05327 7.17450 7.21147 8.49719
Molecular weight = 342.14amu
Principal moments of inertia in cm(-1)
A = 0.012435 B = 0.002642 C = 0.002315
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2251.142425 B =10595.302545 C =12092.679951
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.156 4.156
2 C 0.085 3.915
3 H 0.119 0.881
4 O -0.406 6.406
5 C 0.041 3.959
6 C -0.142 4.142
7 C -0.135 4.135
8 H 0.154 0.846
9 C 0.519 3.481
10 O -0.588 6.588
11 N -0.706 5.706
12 C 0.158 3.842
13 C 0.066 3.934
14 N -0.678 5.678
15 C 0.535 3.465
16 O -0.555 6.555
17 C -0.107 4.107
18 S -0.200 6.200
19 C -0.611 4.611
20 H 0.077 0.923
21 C -0.021 4.021
22 N -0.915 5.915
23 Si 1.139 2.861
24 H -0.267 1.267
25 H -0.260 1.260
26 H -0.281 1.281
27 C -0.178 4.178
28 C -0.115 4.115
29 H 0.097 0.903
30 H 0.064 0.936
31 H 0.023 0.977
32 H 0.086 0.914
33 H 0.091 0.909
34 H 0.119 0.881
35 H 0.063 0.937
36 H 0.417 0.583
37 H 0.072 0.928
38 H 0.035 0.965
39 H 0.421 0.579
40 H 0.111 0.889
41 H 0.114 0.886
42 H 0.260 0.740
43 H 0.094 0.906
44 H 0.103 0.897
45 H 0.129 0.871
46 H 0.131 0.869
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 28.209 12.762 11.373 32.984
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.213 4.213
2 C 0.028 3.972
3 H 0.136 0.864
4 O -0.326 6.326
5 C -0.035 4.035
6 C -0.180 4.180
7 C -0.157 4.157
8 H 0.171 0.829
9 C 0.307 3.693
10 O -0.468 6.468
11 N -0.359 5.359
12 C 0.033 3.967
13 C -0.022 4.022
14 N -0.332 5.332
15 C 0.321 3.679
16 O -0.432 6.432
17 C -0.259 4.259
18 S 0.026 5.974
19 C -0.758 4.758
20 H 0.095 0.905
21 C -0.224 4.224
22 N -0.550 5.550
23 Si 0.957 3.043
24 H -0.192 1.192
25 H -0.185 1.185
26 H -0.206 1.206
27 C -0.217 4.217
28 C -0.152 4.152
29 H 0.116 0.884
30 H 0.083 0.917
31 H 0.043 0.957
32 H 0.105 0.895
33 H 0.109 0.891
34 H 0.137 0.863
35 H 0.081 0.919
36 H 0.255 0.745
37 H 0.090 0.910
38 H 0.053 0.947
39 H 0.260 0.740
40 H 0.129 0.871
41 H 0.132 0.868
42 H 0.071 0.929
43 H 0.113 0.887
44 H 0.121 0.879
45 H 0.147 0.853
46 H 0.149 0.851
Dipole moment (debyes) X Y Z Total
from point charges 26.698 10.170 9.708 30.174
hybrid contribution 0.876 0.970 0.943 1.612
sum 27.573 11.141 10.651 31.589
Atomic orbital electron populations
1.21980 0.94259 1.01060 1.04016 1.23112 0.94557 0.96475 0.83095
0.86359 1.89185 1.29047 1.75161 1.39203 1.23600 0.83697 1.01018
0.95190 1.22986 0.97369 1.01320 0.96360 1.22916 0.94388 0.97401
1.00969 0.82858 1.20919 0.82118 0.88544 0.77707 1.90711 1.74410
1.23467 1.58187 1.45846 1.30999 1.15561 1.43449 1.20717 0.88957
0.91601 0.95408 1.20691 0.91342 1.01593 0.88611 1.44994 1.18611
1.12258 1.57367 1.20054 0.83498 0.87273 0.77089 1.90719 1.80165
1.18609 1.53718 1.23213 0.96249 1.01911 1.04526 1.85175 1.18861
1.20240 1.73092 1.24042 1.06909 0.98692 1.46177 0.90525 1.27862
1.01657 1.00939 0.91962 1.70887 1.36155 1.04006 1.43998 0.82688
0.72120 0.72092 0.77413 1.19205 1.18470 1.20646 1.23441 1.02502
0.97913 0.97818 1.23513 0.99710 0.99040 0.92952 0.88414 0.91679
0.95735 0.89548 0.89064 0.86299 0.91852 0.74488 0.91006 0.94673
0.73972 0.87097 0.86818 0.92908 0.88732 0.87897 0.85332 0.85110
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -3.21 8.52 71.98 0.61 -2.59 16
2 C 0.09 1.38 3.83 31.10 0.12 1.50 16
3 H 0.12 1.06 8.14 -2.39 -0.02 1.04 16
4 O -0.41 -9.58 11.34 -148.98 -1.69 -11.27 16
5 C 0.04 0.63 7.63 72.48 0.55 1.19 16
6 C -0.14 -2.00 6.61 31.61 0.21 -1.79 16
7 C -0.14 -1.83 3.43 -10.53 -0.04 -1.87 16
8 H 0.15 0.55 8.14 -2.39 -0.02 0.53 16
9 C 0.52 11.70 4.90 87.65 0.43 12.13 16
10 O -0.59 -20.32 15.59 -3.03 -0.05 -20.37 16
11 N -0.71 -12.31 4.82 -463.06 -2.23 -14.54 16
12 C 0.16 3.90 5.62 86.38 0.49 4.39 16
13 C 0.07 1.23 1.78 3.60 0.01 1.24 16
14 N -0.68 -14.44 5.46 -422.91 -2.31 -16.75 16
15 C 0.54 18.64 7.67 87.66 0.67 19.31 16
16 O -0.56 -25.22 14.55 -3.03 -0.04 -25.26 16
17 C -0.11 -4.10 6.16 71.24 0.44 -3.66 16
18 S -0.20 -11.05 19.60 -56.49 -1.11 -12.16 16
19 C -0.61 -35.12 9.50 67.95 0.65 -34.48 16
20 H 0.08 4.10 7.80 -2.91 -0.02 4.07 16
21 C -0.02 -1.24 5.49 84.86 0.47 -0.78 16
22 N -0.92 -58.89 13.67 21.65 0.30 -58.60 16
23 Si 1.14 49.42 29.92 68.60 2.05 51.48 16
24 H -0.27 -10.77 7.11 99.48 0.71 -10.06 16
25 H -0.26 -10.08 7.11 99.48 0.71 -9.37 16
26 H -0.28 -12.17 7.11 99.48 0.71 -11.47 16
27 C -0.18 -3.12 10.11 30.62 0.31 -2.82 16
28 C -0.11 -1.01 10.05 30.62 0.31 -0.70 16
29 H 0.10 1.40 7.76 -2.38 -0.02 1.38 16
30 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16
31 H 0.02 0.71 6.86 -2.38 -0.02 0.70 16
32 H 0.09 1.38 8.14 -2.38 -0.02 1.36 16
33 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16
34 H 0.12 0.75 8.14 -2.38 -0.02 0.73 16
35 H 0.06 1.33 6.78 -2.39 -0.02 1.32 16
36 H 0.42 3.76 8.32 -92.71 -0.77 2.99 16
37 H 0.07 1.85 7.91 -2.39 -0.02 1.83 16
38 H 0.03 1.27 6.74 -2.38 -0.02 1.26 16
39 H 0.42 5.47 8.83 -92.71 -0.82 4.66 16
40 H 0.11 3.79 8.14 -2.39 -0.02 3.77 16
41 H 0.11 3.85 8.14 -2.40 -0.02 3.83 16
42 H 0.26 17.46 7.13 -92.71 -0.66 16.80 16
43 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16
44 H 0.10 1.82 8.06 -2.39 -0.02 1.80 16
45 H 0.13 0.68 8.14 -2.39 -0.02 0.66 16
46 H 0.13 0.56 8.14 -2.39 -0.02 0.54 16
Total: -1.00 -93.67 393.32 -0.33 -94.00
By element:
Atomic # 1 Polarization: 22.86 SS G_CDS: -0.47 Total: 22.39 kcal
Atomic # 6 Polarization: -14.14 SS G_CDS: 5.22 Total: -8.92 kcal
Atomic # 7 Polarization: -85.64 SS G_CDS: -4.24 Total: -89.88 kcal
Atomic # 8 Polarization: -55.12 SS G_CDS: -1.78 Total: -56.90 kcal
Atomic # 14 Polarization: 49.42 SS G_CDS: 2.05 Total: 51.48 kcal
Atomic # 16 Polarization: -11.05 SS G_CDS: -1.11 Total: -12.16 kcal
Total: -93.67 -0.33 -94.00 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001722095223.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -34.986 kcal
(2) G-P(sol) polarization free energy of solvation -93.674 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.660 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.331 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.004 kcal
(6) G-S(sol) free energy of system = (1) + (5) -128.990 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.68 seconds