Wall clock time and date at job start Sat Apr 11 2020 06:32:34
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.17403 * 1
3 3 C 1.47197 * 179.97438 * 2 1
4 4 N 1.46500 * 109.47266 * 175.53959 * 3 2 1
5 5 C 1.34775 * 120.00014 * 270.00185 * 4 3 2
6 6 O 1.21282 * 119.99741 * 179.97438 * 5 4 3
7 7 C 1.50696 * 120.00240 * 0.02562 * 5 4 3
8 8 H 1.09002 * 109.46780 * 324.99401 * 7 5 4
9 9 C 1.52998 * 109.47564 * 84.99572 * 7 5 4
10 10 S 1.81402 * 109.46953 * 205.00170 * 7 5 4
11 11 C 1.81409 * 101.92058 * 184.99757 * 10 7 5
12 12 O 1.42101 * 108.57504 * 299.47830 * 10 7 5
13 13 O 1.42095 * 108.58072 * 70.51072 * 10 7 5
14 14 C 1.46507 * 119.99627 * 90.00078 * 4 3 2
15 15 C 1.53036 * 109.45897 * 60.00447 * 14 4 3
16 16 C 1.53191 * 109.31166 * 178.61271 * 15 14 4
17 17 N 1.46926 * 108.89452 * 54.56289 * 16 15 14
18 18 C 1.36934 * 120.63630 * 126.46229 * 17 16 15
19 19 H 1.08000 * 119.99464 * 331.92669 * 18 17 16
20 20 C 1.38810 * 120.00385 * 151.92945 * 18 17 16
21 21 N 1.31619 * 119.99689 * 343.17004 * 20 18 17
22 22 Si 1.86795 * 119.99988 * 163.17171 * 20 18 17
23 23 H 1.48503 * 109.47611 * 359.97438 * 22 20 18
24 24 H 1.48502 * 109.47271 * 120.00121 * 22 20 18
25 25 H 1.48496 * 109.47355 * 239.99904 * 22 20 18
26 26 C 1.46973 * 118.71425 * 306.64410 * 17 16 15
27 27 C 1.53043 * 109.45897 * 299.93127 * 14 4 3
28 28 H 4.40641 * 5.51423 * 180.02562 * 4 1 2
29 29 H 1.09000 * 109.47201 * 55.54179 * 3 2 1
30 30 H 1.08996 * 109.47209 * 295.54319 * 3 2 1
31 31 H 1.08994 * 109.47068 * 180.02562 * 9 7 5
32 32 H 1.09003 * 109.47091 * 300.00109 * 9 7 5
33 33 H 1.09002 * 109.47211 * 60.00093 * 9 7 5
34 34 H 1.08995 * 109.47066 * 59.99366 * 11 10 7
35 35 H 1.09000 * 109.46800 * 179.97438 * 11 10 7
36 36 H 1.09004 * 109.46483 * 299.99888 * 11 10 7
37 37 H 1.08996 * 109.45453 * 179.97438 * 14 4 3
38 38 H 1.09001 * 109.50071 * 58.66060 * 15 14 4
39 39 H 1.09005 * 109.49477 * 298.56396 * 15 14 4
40 40 H 1.09000 * 109.58954 * 174.41929 * 16 15 14
41 41 H 1.08996 * 109.58649 * 294.70243 * 16 15 14
42 42 H 0.97000 * 119.99637 * 180.02562 * 21 20 18
43 43 H 1.09000 * 109.46458 * 293.56938 * 26 17 16
44 44 H 1.08992 * 109.71060 * 173.28601 * 26 17 16
45 45 H 1.08995 * 109.49931 * 301.34255 * 27 14 4
46 46 H 1.08997 * 109.49588 * 61.40711 * 27 14 4
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.1740 0.0000 0.0000
3 6 2.6460 0.0007 0.0000
4 7 3.1337 1.3779 -0.1074
5 6 3.3581 1.9206 -1.3205
6 8 3.7615 3.0610 -1.4094
7 6 3.1067 1.1111 -2.5664
8 1 3.3591 0.0674 -2.3786
9 6 1.6306 1.2170 -2.9544
10 16 4.1346 1.7476 -3.9187
11 6 3.5666 0.7495 -5.3230
12 8 3.7823 3.1038 -4.1554
13 8 5.4908 1.4199 -3.6495
14 6 3.3776 2.1651 1.1039
15 6 4.4328 1.4650 1.9631
16 6 4.7104 2.3082 3.2116
17 7 3.4405 2.5640 3.9050
18 6 3.2967 2.2600 5.2324
19 1 3.8778 1.4614 5.6694
20 6 2.4042 2.9781 6.0162
21 7 1.9472 4.1392 5.5974
22 14 1.8518 2.2968 7.6654
23 1 2.5054 0.9846 7.9031
24 1 2.2330 3.2429 8.7447
25 1 0.3773 2.1208 7.6596
26 6 2.3264 3.1486 3.1453
27 6 2.0756 2.2960 1.8976
28 1 -1.0502 -0.0004 0.0002
29 1 3.0096 -0.5806 -0.8473
30 1 3.0095 -0.4423 0.9272
31 1 1.4487 0.6311 -3.8552
32 1 1.0129 0.8344 -2.1417
33 1 1.3782 2.2606 -3.1422
34 1 2.5012 0.9168 -5.4803
35 1 4.1157 1.0378 -6.2194
36 1 3.7416 -0.3057 -5.1129
37 1 3.7348 3.1568 0.8265
38 1 5.3524 1.3512 1.3891
39 1 4.0658 0.4829 2.2615
40 1 5.3863 1.7681 3.8745
41 1 5.1644 3.2551 2.9195
42 1 1.3237 4.6412 6.1453
43 1 2.5837 4.1651 2.8476
44 1 1.4288 3.1650 3.7632
45 1 1.3176 2.7736 1.2769
46 1 1.7306 1.3061 2.1962
RHF calculation, no. of doubly occupied orbitals= 62
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001724046891.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:32:34
Heat of formation + Delta-G solvation = -10.732492 kcal
Electronic energy + Delta-G solvation = -29267.958492 eV
Core-core repulsion = 25288.306041 eV
Total energy + Delta-G solvation = -3979.652451 eV
No. of doubly occupied orbitals = 62
Molecular weight
(most abundant/longest-lived isotopes) = 342.145 amu
Computer time = 1.48 seconds
Orbital eigenvalues (eV)
-40.48042 -37.69002 -37.18327 -36.18837 -35.87358 -34.02040 -32.98080 -32.13208
-30.30272 -29.85376 -29.49244 -27.32562 -25.75005 -24.63633 -22.25191 -22.19411
-20.16870 -19.40377 -18.92247 -18.07606 -17.86677 -17.22441 -16.65761 -16.40094
-16.09324 -15.57658 -15.39918 -14.79945 -14.42258 -14.05002 -13.87610 -13.74116
-13.67664 -13.62712 -13.45269 -13.09619 -13.02247 -12.83457 -12.56248 -12.40979
-12.33980 -12.19331 -12.13437 -11.52807 -11.31248 -11.25555 -11.03258 -10.94238
-10.75878 -10.59006 -10.40006 -10.26429 -10.18328 -10.11050 -9.93049 -9.76386
-9.57520 -8.74421 -8.45874 -6.70763 -5.80957 -3.23819 -0.38922 2.22904
2.38743 2.47218 2.68887 2.99287 3.35187 3.43216 3.45193 3.53632
3.69098 4.05686 4.16532 4.21920 4.38588 4.47249 4.47723 4.66627
4.91478 4.98330 5.15574 5.21701 5.25719 5.28402 5.39105 5.46576
5.53212 5.65203 5.77722 5.81509 6.02517 6.11265 6.25082 6.43183
6.49519 6.58831 6.73354 6.74732 6.91605 7.23149 7.32779 7.46647
7.63055 7.77743 7.91047 8.42439 9.18497 9.81713 10.38638 11.27866
Molecular weight = 342.14amu
Principal moments of inertia in cm(-1)
A = 0.021836 B = 0.002979 C = 0.002825
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1281.972153 B = 9395.527368 C = 9908.853262
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.181 4.181
2 C -0.202 4.202
3 C 0.211 3.789
4 N -0.588 5.588
5 C 0.542 3.458
6 O -0.518 6.518
7 C -0.618 4.618
8 H 0.154 0.846
9 C -0.145 4.145
10 S 2.445 3.555
11 C -0.662 4.662
12 O -0.908 6.908
13 O -0.930 6.930
14 C 0.142 3.858
15 C -0.141 4.141
16 C 0.148 3.852
17 N -0.592 5.592
18 C -0.253 4.253
19 H 0.066 0.934
20 C 0.003 3.997
21 N -0.901 5.901
22 Si 0.902 3.098
23 H -0.278 1.278
24 H -0.290 1.290
25 H -0.289 1.289
26 C 0.174 3.826
27 C -0.142 4.142
28 H 0.217 0.783
29 H 0.098 0.902
30 H 0.112 0.888
31 H 0.079 0.921
32 H 0.091 0.909
33 H 0.084 0.916
34 H 0.132 0.868
35 H 0.132 0.868
36 H 0.129 0.871
37 H 0.101 0.899
38 H 0.057 0.943
39 H 0.062 0.938
40 H 0.059 0.941
41 H 0.022 0.978
42 H 0.254 0.746
43 H 0.021 0.979
44 H 0.090 0.910
45 H 0.050 0.950
46 H 0.059 0.941
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.923 -12.812 -21.091 24.752
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.199 4.199
2 C -0.204 4.204
3 C 0.089 3.911
4 N -0.319 5.319
5 C 0.327 3.673
6 O -0.394 6.394
7 C -0.726 4.726
8 H 0.171 0.829
9 C -0.202 4.202
10 S 2.622 3.378
11 C -0.811 4.811
12 O -0.905 6.905
13 O -0.927 6.927
14 C 0.041 3.959
15 C -0.181 4.181
16 C 0.021 3.979
17 N -0.315 5.315
18 C -0.382 4.382
19 H 0.084 0.916
20 C -0.196 4.196
21 N -0.545 5.545
22 Si 0.732 3.268
23 H -0.203 1.203
24 H -0.217 1.217
25 H -0.216 1.216
26 C 0.048 3.952
27 C -0.182 4.182
28 H 0.234 0.766
29 H 0.116 0.884
30 H 0.130 0.870
31 H 0.098 0.902
32 H 0.109 0.891
33 H 0.103 0.897
34 H 0.150 0.850
35 H 0.151 0.849
36 H 0.148 0.852
37 H 0.119 0.881
38 H 0.076 0.924
39 H 0.080 0.920
40 H 0.077 0.923
41 H 0.040 0.960
42 H 0.064 0.936
43 H 0.039 0.961
44 H 0.109 0.891
45 H 0.069 0.931
46 H 0.078 0.922
Dipole moment (debyes) X Y Z Total
from point charges -1.140 -11.422 -20.975 23.910
hybrid contribution -1.332 -1.204 0.875 1.997
sum -2.472 -12.626 -20.099 23.864
Atomic orbital electron populations
1.24935 0.95883 0.98401 1.00678 1.23356 0.94735 1.01749 1.00528
1.18479 0.84140 0.83940 1.04550 1.48179 1.63714 1.13767 1.06191
1.19155 0.78032 0.86476 0.83650 1.90888 1.45578 1.17001 1.85885
1.30731 1.14105 1.12794 1.14955 0.82881 1.21754 0.89691 1.04980
1.03810 1.07576 0.75949 0.76707 0.77571 1.30407 1.13635 1.16440
1.20626 1.93612 1.84102 1.29287 1.83454 1.93600 1.29878 1.85356
1.83877 1.21408 0.97094 0.95579 0.81854 1.22424 0.97340 1.00283
0.98037 1.20855 0.89586 0.96052 0.91430 1.44097 1.06861 1.73616
1.06900 1.19205 1.22704 1.11517 0.84822 0.91594 1.25062 1.01781
0.95022 0.97745 1.70041 1.34575 1.11612 1.38295 0.86235 0.78307
0.78457 0.83836 1.20263 1.21694 1.21615 1.20765 0.93385 0.92221
0.88878 1.22553 0.94924 1.01974 0.98716 0.76604 0.88426 0.86985
0.90212 0.89070 0.89727 0.84979 0.84912 0.85233 0.88057 0.92403
0.91965 0.92278 0.96011 0.93630 0.96105 0.89148 0.93143 0.92233
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 30.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.18 -1.84 18.55 29.55 0.55 -1.29 16
2 C -0.20 -2.25 10.01 -37.12 -0.37 -2.63 16
3 C 0.21 2.25 5.16 -6.83 -0.04 2.22 16
4 N -0.59 -8.35 2.37 -169.38 -0.40 -8.75 16
5 C 0.54 7.99 6.79 -10.99 -0.07 7.91 16
6 O -0.52 -9.90 14.81 -9.38 -0.14 -10.04 16
7 C -0.62 -5.74 2.47 -27.89 -0.07 -5.81 16
8 H 0.15 0.80 6.06 -51.92 -0.31 0.49 16
9 C -0.14 -1.06 8.86 37.16 0.33 -0.73 16
10 S 2.45 24.95 4.52 -107.50 -0.49 24.47 16
11 C -0.66 -2.82 10.01 101.05 1.01 -1.80 16
12 O -0.91 -13.24 17.21 -64.29 -1.11 -14.35 16
13 O -0.93 -12.78 18.10 -57.83 -1.05 -13.83 16
14 C 0.14 2.48 2.48 -67.89 -0.17 2.31 16
15 C -0.14 -2.39 5.31 -26.61 -0.14 -2.53 16
16 C 0.15 3.07 6.51 -3.71 -0.02 3.04 16
17 N -0.59 -14.61 3.00 -172.29 -0.52 -15.13 16
18 C -0.25 -6.83 9.58 -15.06 -0.14 -6.97 16
19 H 0.07 1.74 7.88 -52.49 -0.41 1.33 16
20 C 0.00 0.07 4.92 -17.43 -0.09 -0.01 16
21 N -0.90 -26.06 11.20 55.49 0.62 -25.44 16
22 Si 0.90 21.45 29.59 -169.99 -5.03 16.42 16
23 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16
24 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16
25 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16
26 C 0.17 4.14 5.30 -3.69 -0.02 4.12 16
27 C -0.14 -2.70 4.73 -26.61 -0.13 -2.83 16
28 H 0.22 1.55 7.80 -54.08 -0.42 1.13 16
29 H 0.10 0.67 5.85 -51.93 -0.30 0.37 16
30 H 0.11 1.19 6.45 -51.93 -0.34 0.85 16
31 H 0.08 0.25 6.39 -51.93 -0.33 -0.08 16
32 H 0.09 0.73 4.94 -51.93 -0.26 0.47 16
33 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16
34 H 0.13 0.30 6.77 -51.93 -0.35 -0.05 16
35 H 0.13 0.47 8.14 -51.92 -0.42 0.05 16
36 H 0.13 0.24 8.14 -51.92 -0.42 -0.19 16
37 H 0.10 2.03 6.90 -51.93 -0.36 1.67 16
38 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16
39 H 0.06 1.00 6.72 -51.93 -0.35 0.65 16
40 H 0.06 1.18 7.93 -51.93 -0.41 0.77 16
41 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16
42 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16
43 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16
44 H 0.09 2.40 6.07 -51.93 -0.32 2.09 16
45 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16
46 H 0.06 1.13 7.02 -51.93 -0.36 0.76 16
LS Contribution 374.91 15.07 5.65 5.65
Total: -1.00 -38.14 374.91 -8.45 -46.59
By element:
Atomic # 1 Polarization: 6.03 SS G_CDS: -6.62 Total: -0.60 kcal
Atomic # 6 Polarization: -5.62 SS G_CDS: 0.63 Total: -4.99 kcal
Atomic # 7 Polarization: -49.03 SS G_CDS: -0.30 Total: -49.33 kcal
Atomic # 8 Polarization: -35.92 SS G_CDS: -2.29 Total: -38.21 kcal
Atomic # 14 Polarization: 21.45 SS G_CDS: -5.03 Total: 16.42 kcal
Atomic # 16 Polarization: 24.95 SS G_CDS: -0.49 Total: 24.47 kcal
Total LS contribution 5.65 Total: 5.65 kcal
Total: -38.14 -8.45 -46.59 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001724046891.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 35.854 kcal
(2) G-P(sol) polarization free energy of solvation -38.138 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.284 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.448 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.586 kcal
(6) G-S(sol) free energy of system = (1) + (5) -10.732 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.48 seconds