Wall clock time and date at job start Sat Apr 11 2020 06:32:32
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.17403 * 1
3 3 C 1.47197 * 179.97438 * 2 1
4 4 N 1.46500 * 109.47266 * 175.53959 * 3 2 1
5 5 C 1.34775 * 120.00014 * 270.00185 * 4 3 2
6 6 O 1.21282 * 119.99741 * 179.97438 * 5 4 3
7 7 C 1.50696 * 120.00240 * 0.02562 * 5 4 3
8 8 H 1.09002 * 109.46780 * 324.99401 * 7 5 4
9 9 C 1.52998 * 109.47564 * 84.99572 * 7 5 4
10 10 S 1.81402 * 109.46953 * 205.00170 * 7 5 4
11 11 C 1.81409 * 101.92058 * 184.99757 * 10 7 5
12 12 O 1.42101 * 108.57504 * 299.47830 * 10 7 5
13 13 O 1.42095 * 108.58072 * 70.51072 * 10 7 5
14 14 C 1.46507 * 119.99627 * 90.00078 * 4 3 2
15 15 C 1.53036 * 109.45897 * 60.00447 * 14 4 3
16 16 C 1.53191 * 109.31166 * 178.61271 * 15 14 4
17 17 N 1.46926 * 108.89452 * 54.56289 * 16 15 14
18 18 C 1.36934 * 120.63630 * 126.46229 * 17 16 15
19 19 H 1.08000 * 119.99464 * 331.92669 * 18 17 16
20 20 C 1.38810 * 120.00385 * 151.92945 * 18 17 16
21 21 N 1.31619 * 119.99689 * 343.17004 * 20 18 17
22 22 Si 1.86795 * 119.99988 * 163.17171 * 20 18 17
23 23 H 1.48503 * 109.47611 * 359.97438 * 22 20 18
24 24 H 1.48502 * 109.47271 * 120.00121 * 22 20 18
25 25 H 1.48496 * 109.47355 * 239.99904 * 22 20 18
26 26 C 1.46973 * 118.71425 * 306.64410 * 17 16 15
27 27 C 1.53043 * 109.45897 * 299.93127 * 14 4 3
28 28 H 4.40641 * 5.51423 * 180.02562 * 4 1 2
29 29 H 1.09000 * 109.47201 * 55.54179 * 3 2 1
30 30 H 1.08996 * 109.47209 * 295.54319 * 3 2 1
31 31 H 1.08994 * 109.47068 * 180.02562 * 9 7 5
32 32 H 1.09003 * 109.47091 * 300.00109 * 9 7 5
33 33 H 1.09002 * 109.47211 * 60.00093 * 9 7 5
34 34 H 1.08995 * 109.47066 * 59.99366 * 11 10 7
35 35 H 1.09000 * 109.46800 * 179.97438 * 11 10 7
36 36 H 1.09004 * 109.46483 * 299.99888 * 11 10 7
37 37 H 1.08996 * 109.45453 * 179.97438 * 14 4 3
38 38 H 1.09001 * 109.50071 * 58.66060 * 15 14 4
39 39 H 1.09005 * 109.49477 * 298.56396 * 15 14 4
40 40 H 1.09000 * 109.58954 * 174.41929 * 16 15 14
41 41 H 1.08996 * 109.58649 * 294.70243 * 16 15 14
42 42 H 0.97000 * 119.99637 * 180.02562 * 21 20 18
43 43 H 1.09000 * 109.46458 * 293.56938 * 26 17 16
44 44 H 1.08992 * 109.71060 * 173.28601 * 26 17 16
45 45 H 1.08995 * 109.49931 * 301.34255 * 27 14 4
46 46 H 1.08997 * 109.49588 * 61.40711 * 27 14 4
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.1740 0.0000 0.0000
3 6 2.6460 0.0007 0.0000
4 7 3.1337 1.3779 -0.1074
5 6 3.3581 1.9206 -1.3205
6 8 3.7615 3.0610 -1.4094
7 6 3.1067 1.1111 -2.5664
8 1 3.3591 0.0674 -2.3786
9 6 1.6306 1.2170 -2.9544
10 16 4.1346 1.7476 -3.9187
11 6 3.5666 0.7495 -5.3230
12 8 3.7823 3.1038 -4.1554
13 8 5.4908 1.4199 -3.6495
14 6 3.3776 2.1651 1.1039
15 6 4.4328 1.4650 1.9631
16 6 4.7104 2.3082 3.2116
17 7 3.4405 2.5640 3.9050
18 6 3.2967 2.2600 5.2324
19 1 3.8778 1.4614 5.6694
20 6 2.4042 2.9781 6.0162
21 7 1.9472 4.1392 5.5974
22 14 1.8518 2.2968 7.6654
23 1 2.5054 0.9846 7.9031
24 1 2.2330 3.2429 8.7447
25 1 0.3773 2.1208 7.6596
26 6 2.3264 3.1486 3.1453
27 6 2.0756 2.2960 1.8976
28 1 -1.0502 -0.0004 0.0002
29 1 3.0096 -0.5806 -0.8473
30 1 3.0095 -0.4423 0.9272
31 1 1.4487 0.6311 -3.8552
32 1 1.0129 0.8344 -2.1417
33 1 1.3782 2.2606 -3.1422
34 1 2.5012 0.9168 -5.4803
35 1 4.1157 1.0378 -6.2194
36 1 3.7416 -0.3057 -5.1129
37 1 3.7348 3.1568 0.8265
38 1 5.3524 1.3512 1.3891
39 1 4.0658 0.4829 2.2615
40 1 5.3863 1.7681 3.8745
41 1 5.1644 3.2551 2.9195
42 1 1.3237 4.6412 6.1453
43 1 2.5837 4.1651 2.8476
44 1 1.4288 3.1650 3.7632
45 1 1.3176 2.7736 1.2769
46 1 1.7306 1.3061 2.1962
RHF calculation, no. of doubly occupied orbitals= 62
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001724046891.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:32:32
Heat of formation + Delta-G solvation = -39.451026 kcal
Electronic energy + Delta-G solvation = -29269.203821 eV
Core-core repulsion = 25288.306041 eV
Total energy + Delta-G solvation = -3980.897780 eV
No. of doubly occupied orbitals = 62
Molecular weight
(most abundant/longest-lived isotopes) = 342.145 amu
Computer time = 1.14 seconds
Orbital eigenvalues (eV)
-41.64797 -39.22084 -38.05111 -37.25245 -36.98000 -35.20880 -34.02518 -33.51842
-31.95223 -31.32750 -30.19772 -28.29709 -27.18912 -25.83831 -23.94543 -23.77844
-21.35659 -20.88275 -19.77461 -19.10115 -18.82064 -18.62298 -17.98375 -17.20637
-17.07114 -16.83898 -16.48473 -16.32389 -15.66705 -15.43678 -15.19931 -14.93914
-14.83958 -14.46673 -14.43942 -14.23706 -14.09803 -13.93154 -13.71572 -13.29264
-13.23332 -13.16135 -13.08640 -13.04284 -12.94418 -12.68912 -12.57921 -12.26664
-12.03504 -11.98221 -11.96629 -11.64957 -11.59557 -11.43262 -11.31701 -11.07121
-10.83490 -10.60764 -9.97112 -8.74642 -7.89652 -5.36337 -1.07316 1.19670
1.43310 1.46844 1.47776 1.58845 1.75485 1.91841 2.13063 2.50027
2.79858 3.02313 3.23779 3.26701 3.48269 3.60437 3.63640 3.74021
3.85657 4.00546 4.12795 4.18214 4.26207 4.27798 4.40570 4.45322
4.56795 4.60160 4.61185 4.72603 4.80115 4.96227 4.97533 5.00970
5.05591 5.11261 5.17332 5.24267 5.35233 5.42263 5.60426 5.65187
6.11759 6.36008 6.70177 6.80627 7.10795 7.80522 8.34327 9.17961
Molecular weight = 342.14amu
Principal moments of inertia in cm(-1)
A = 0.021836 B = 0.002979 C = 0.002825
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1281.972153 B = 9395.527368 C = 9908.853262
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.174 4.174
2 C -0.230 4.230
3 C 0.203 3.797
4 N -0.586 5.586
5 C 0.528 3.472
6 O -0.575 6.575
7 C -0.604 4.604
8 H 0.201 0.799
9 C -0.148 4.148
10 S 2.419 3.581
11 C -0.622 4.622
12 O -0.972 6.972
13 O -0.982 6.982
14 C 0.149 3.851
15 C -0.124 4.124
16 C 0.142 3.858
17 N -0.607 5.607
18 C -0.260 4.260
19 H 0.073 0.927
20 C -0.053 4.053
21 N -0.938 5.938
22 Si 0.970 3.030
23 H -0.262 1.262
24 H -0.295 1.295
25 H -0.290 1.290
26 C 0.182 3.818
27 C -0.118 4.118
28 H 0.240 0.760
29 H 0.143 0.857
30 H 0.116 0.884
31 H 0.135 0.865
32 H 0.088 0.912
33 H 0.061 0.939
34 H 0.164 0.836
35 H 0.147 0.853
36 H 0.171 0.829
37 H 0.066 0.934
38 H 0.078 0.922
39 H 0.081 0.919
40 H 0.068 0.932
41 H 0.005 0.995
42 H 0.249 0.751
43 H -0.015 1.015
44 H 0.060 0.940
45 H 0.048 0.952
46 H 0.069 0.931
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.973 -17.443 -23.224 29.196
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.192 4.192
2 C -0.231 4.231
3 C 0.082 3.918
4 N -0.315 5.315
5 C 0.316 3.684
6 O -0.455 6.455
7 C -0.713 4.713
8 H 0.218 0.782
9 C -0.206 4.206
10 S 2.604 3.396
11 C -0.776 4.776
12 O -0.969 6.969
13 O -0.979 6.979
14 C 0.046 3.954
15 C -0.164 4.164
16 C 0.016 3.984
17 N -0.331 5.331
18 C -0.390 4.390
19 H 0.091 0.909
20 C -0.248 4.248
21 N -0.585 5.585
22 Si 0.798 3.202
23 H -0.186 1.186
24 H -0.222 1.222
25 H -0.217 1.217
26 C 0.056 3.944
27 C -0.158 4.158
28 H 0.256 0.744
29 H 0.160 0.840
30 H 0.133 0.867
31 H 0.153 0.847
32 H 0.107 0.893
33 H 0.081 0.919
34 H 0.182 0.818
35 H 0.165 0.835
36 H 0.189 0.811
37 H 0.084 0.916
38 H 0.096 0.904
39 H 0.100 0.900
40 H 0.086 0.914
41 H 0.023 0.977
42 H 0.059 0.941
43 H 0.004 0.996
44 H 0.078 0.922
45 H 0.067 0.933
46 H 0.087 0.913
Dipole moment (debyes) X Y Z Total
from point charges -2.156 -16.073 -23.092 28.217
hybrid contribution -1.033 0.214 1.460 1.801
sum -3.189 -15.859 -21.632 27.011
Atomic orbital electron populations
1.25634 0.96724 0.97041 0.99794 1.23541 0.95185 1.02888 1.01473
1.18886 0.84244 0.81833 1.06811 1.48084 1.63622 1.14946 1.04888
1.20130 0.76671 0.86358 0.85229 1.90868 1.47894 1.19920 1.86845
1.30691 1.15276 1.14011 1.11313 0.78193 1.21928 0.87717 1.04764
1.06184 1.07865 0.75454 0.76832 0.79472 1.30104 1.15353 1.16496
1.15653 1.93539 1.84627 1.34202 1.84582 1.93533 1.33149 1.85883
1.85323 1.20958 0.96045 0.95052 0.83393 1.22219 0.98136 0.99950
0.96090 1.21007 0.88181 0.96133 0.93048 1.44337 1.08337 1.73620
1.06805 1.19584 1.22353 1.11273 0.85820 0.90893 1.25880 1.02281
0.95258 1.01399 1.70217 1.35439 1.13072 1.39725 0.85164 0.77568
0.78129 0.79311 1.18604 1.22227 1.21666 1.20496 0.92043 0.91613
0.90259 1.22203 0.95925 1.01086 0.96545 0.74385 0.83953 0.86661
0.84701 0.89318 0.91946 0.81838 0.83483 0.81138 0.91579 0.90374
0.90025 0.91372 0.97710 0.94145 0.99643 0.92183 0.93298 0.91254
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 26.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -3.00 18.55 74.32 1.38 -1.62 16
2 C -0.23 -4.40 10.01 31.12 0.31 -4.09 16
3 C 0.20 3.65 5.16 84.57 0.44 4.09 16
4 N -0.59 -16.04 2.37 -808.17 -1.91 -17.95 16
5 C 0.53 15.46 6.79 87.66 0.60 16.05 16
6 O -0.58 -23.43 14.81 11.24 0.17 -23.26 16
7 C -0.60 -9.55 2.47 29.85 0.07 -9.48 16
8 H 0.20 1.01 6.06 -2.39 -0.01 1.00 16
9 C -0.15 -1.63 8.86 71.98 0.64 -1.00 16
10 S 2.42 46.20 4.52 -56.49 -0.26 45.94 16
11 C -0.62 -1.74 10.01 113.37 1.14 -0.60 16
12 O -0.97 -29.60 17.21 -121.20 -2.09 -31.69 16
13 O -0.98 -26.88 18.10 -127.37 -2.30 -29.19 16
14 C 0.15 5.31 2.48 45.02 0.11 5.42 16
15 C -0.12 -4.14 5.31 30.67 0.16 -3.98 16
16 C 0.14 6.02 6.51 86.36 0.56 6.58 16
17 N -0.61 -30.89 3.00 -699.01 -2.10 -32.99 16
18 C -0.26 -14.23 9.58 84.03 0.81 -13.42 16
19 H 0.07 3.82 7.88 -2.91 -0.02 3.80 16
20 C -0.05 -2.97 4.92 84.86 0.42 -2.56 16
21 N -0.94 -56.57 11.20 21.65 0.24 -56.33 16
22 Si 0.97 44.66 29.59 68.60 2.03 46.69 16
23 H -0.26 -11.27 7.11 99.48 0.71 -10.56 16
24 H -0.30 -13.73 7.11 99.48 0.71 -13.02 16
25 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16
26 C 0.18 9.19 5.30 86.35 0.46 9.64 16
27 C -0.12 -4.61 4.73 30.67 0.15 -4.47 16
28 H 0.24 2.63 7.80 -4.41 -0.03 2.60 16
29 H 0.14 1.20 5.85 -2.39 -0.01 1.19 16
30 H 0.12 2.03 6.45 -2.39 -0.02 2.01 16
31 H 0.13 -0.04 6.39 -2.39 -0.02 -0.06 16
32 H 0.09 1.08 4.94 -2.39 -0.01 1.07 16
33 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16
34 H 0.16 -0.42 6.77 -2.39 -0.02 -0.43 16
35 H 0.15 0.27 8.14 -2.39 -0.02 0.25 16
36 H 0.17 -0.73 8.14 -2.39 -0.02 -0.75 16
37 H 0.07 2.85 6.90 -2.39 -0.02 2.83 16
38 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16
39 H 0.08 2.44 6.72 -2.38 -0.02 2.42 16
40 H 0.07 2.72 7.93 -2.39 -0.02 2.70 16
41 H 0.00 0.22 8.14 -2.39 -0.02 0.20 16
42 H 0.25 14.54 8.31 -92.71 -0.77 13.77 16
43 H -0.01 -0.81 8.14 -2.39 -0.02 -0.83 16
44 H 0.06 3.37 6.07 -2.39 -0.01 3.36 16
45 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16
46 H 0.07 2.59 7.02 -2.39 -0.02 2.57 16
Total: -1.00 -93.49 374.91 2.00 -91.49
By element:
Atomic # 1 Polarization: 5.71 SS G_CDS: 0.99 Total: 6.70 kcal
Atomic # 6 Polarization: -6.66 SS G_CDS: 7.23 Total: 0.58 kcal
Atomic # 7 Polarization: -103.49 SS G_CDS: -3.77 Total: -107.26 kcal
Atomic # 8 Polarization: -79.91 SS G_CDS: -4.22 Total: -84.13 kcal
Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.69 kcal
Atomic # 16 Polarization: 46.20 SS G_CDS: -0.26 Total: 45.94 kcal
Total: -93.49 2.00 -91.49 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001724046891.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 52.042 kcal
(2) G-P(sol) polarization free energy of solvation -93.491 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.449 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.997 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.493 kcal
(6) G-S(sol) free energy of system = (1) + (5) -39.451 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.14 seconds