Wall clock time and date at job start Sat Apr 11 2020 06:34:19
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46501 * 1
3 3 C 1.34128 * 125.70967 * 2 1
4 4 C 1.38451 * 107.37501 * 179.71462 * 3 2 1
5 5 C 1.46667 * 126.47788 * 180.26059 * 4 3 2
6 6 O 1.21308 * 120.00108 * 0.02562 * 5 4 3
7 7 C 1.50700 * 119.99825 * 180.02562 * 5 4 3
8 8 O 1.45197 * 109.47027 * 180.02562 * 7 5 4
9 9 C 1.34230 * 117.00434 * 179.97438 * 8 7 5
10 10 O 1.20832 * 119.99367 * 359.97438 * 9 8 7
11 11 C 1.50690 * 120.00574 * 179.97438 * 9 8 7
12 12 C 1.53004 * 109.47554 * 179.97438 * 11 9 8
13 13 H 1.08997 * 109.46673 * 54.99880 * 12 11 9
14 14 C 1.50695 * 109.47217 * 295.00097 * 12 11 9
15 15 H 1.08000 * 120.00094 * 325.84124 * 14 12 11
16 16 C 1.37874 * 120.00262 * 145.83725 * 14 12 11
17 17 N 1.31518 * 119.99533 * 6.11429 * 16 14 12
18 18 Si 1.86795 * 120.00193 * 186.11879 * 16 14 12
19 19 H 1.48498 * 109.47651 * 90.00120 * 18 16 14
20 20 H 1.48505 * 109.47103 * 209.99835 * 18 16 14
21 21 H 1.48497 * 109.47060 * 329.99746 * 18 16 14
22 22 C 1.50705 * 109.47168 * 174.99834 * 12 11 9
23 23 C 1.38240 * 119.99678 * 63.46327 * 22 12 11
24 24 C 1.38234 * 119.99518 * 179.78500 * 23 22 12
25 25 C 1.38235 * 119.99954 * 0.44363 * 24 23 22
26 26 C 1.38229 * 120.00097 * 359.80834 * 25 24 23
27 27 C 1.38226 * 119.99845 * 243.73281 * 22 12 11
28 28 C 1.41562 * 107.04779 * 0.26638 * 4 3 2
29 29 N 1.30377 * 107.98170 * 359.97438 * 28 4 3
30 30 H 1.08999 * 109.46756 * 89.99656 * 1 2 3
31 31 H 1.08998 * 109.47311 * 209.99758 * 1 2 3
32 32 H 1.08998 * 109.46732 * 330.00609 * 1 2 3
33 33 H 1.08006 * 126.30979 * 359.97438 * 3 2 1
34 34 H 1.09001 * 109.47131 * 299.99999 * 7 5 4
35 35 H 1.08997 * 109.47393 * 59.99919 * 7 5 4
36 36 H 1.08999 * 109.47064 * 300.00019 * 11 9 8
37 37 H 1.09011 * 109.47104 * 59.99707 * 11 9 8
38 38 H 0.97008 * 119.99419 * 179.97438 * 17 16 14
39 39 H 1.07993 * 119.99949 * 359.97438 * 23 22 12
40 40 H 1.07999 * 119.99696 * 180.27248 * 24 23 22
41 41 H 1.08005 * 119.99656 * 179.83425 * 25 24 23
42 42 H 1.08004 * 120.00074 * 180.02562 * 26 25 24
43 43 H 1.08005 * 120.00357 * 359.97438 * 27 22 12
44 44 H 1.07993 * 126.01058 * 180.02562 * 28 4 3
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.2479 1.0891 0.0000
4 6 3.5621 0.6536 0.0066
5 6 4.7607 1.4988 0.0143
6 8 4.6511 2.7069 0.0159
7 6 6.1286 0.8663 0.0203
8 8 7.1423 1.9058 0.0281
9 6 8.4240 1.5071 0.0347
10 8 8.6900 0.3284 0.0345
11 6 9.5312 2.5293 0.0424
12 6 10.8845 1.8154 0.0495
13 1 10.9358 1.1255 -0.7927
14 6 11.0411 1.0485 1.3373
15 1 10.6203 1.4382 2.2524
16 6 11.7215 -0.1506 1.3472
17 7 12.3364 -0.5667 0.2616
18 14 11.7698 -1.1842 2.9023
19 1 10.6185 -2.1221 2.9095
20 1 13.0376 -1.9566 2.9442
21 1 11.6920 -0.2959 4.0897
22 6 11.9899 2.8332 -0.0667
23 6 12.1710 3.7737 0.9301
24 6 13.1878 4.7044 0.8256
25 6 14.0176 4.7003 -0.2800
26 6 13.8331 3.7631 -1.2792
27 6 12.8191 2.8296 -1.1726
28 6 3.5303 -0.7617 0.0043
29 7 2.2815 -1.1362 -0.0026
30 1 -0.3633 0.0001 -1.0277
31 1 -0.3634 -0.8900 0.5138
32 1 -0.3633 0.8900 0.5137
33 1 1.9145 2.1164 -0.0004
34 1 6.2381 0.2459 0.9098
35 1 6.2474 0.2490 -0.8701
36 1 9.4546 3.1545 -0.8472
37 1 9.4446 3.1521 0.9328
38 1 12.8154 -1.4102 0.2687
39 1 11.5202 3.7794 1.7918
40 1 13.3321 5.4364 1.6064
41 1 14.8102 5.4292 -0.3629
42 1 14.4817 3.7597 -2.1428
43 1 12.6751 2.0973 -1.9533
44 1 4.3894 -1.4160 0.0084
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000795980154.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:34:19
Heat of formation + Delta-G solvation = -17.360787 kcal
Electronic energy + Delta-G solvation = -28201.180794 eV
Core-core repulsion = 24085.796967 eV
Total energy + Delta-G solvation = -4115.383827 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 342.141 amu
Computer time = 0.62 seconds
Orbital eigenvalues (eV)
-41.65678 -39.88954 -38.69598 -38.24099 -35.76118 -34.01153 -33.88388 -31.53940
-30.92796 -29.99514 -29.60999 -28.69690 -26.98841 -25.59625 -23.24336 -22.65449
-21.64131 -21.35464 -20.52279 -19.75050 -19.25562 -17.57591 -16.89169 -16.63400
-16.22131 -16.01409 -15.80672 -15.72345 -15.26981 -14.67208 -14.59620 -14.36569
-14.19525 -13.97676 -13.81672 -13.30253 -13.18278 -13.00544 -12.81838 -12.51191
-12.44541 -12.15351 -11.89061 -11.70564 -11.62410 -11.27316 -10.90315 -10.75215
-10.59596 -10.25371 -10.21683 -10.10229 -9.98233 -9.83160 -9.53346 -9.41257
-9.04762 -9.04173 -8.40271 -8.02410 -7.61662 -5.97935 -3.98823 1.02969
1.73843 1.95811 2.30884 2.34661 2.93682 3.03956 3.14818 3.36790
3.42353 3.44151 3.95891 4.33172 4.37184 4.48752 4.62168 4.70563
4.76244 4.89877 4.97562 5.10726 5.30676 5.33818 5.37998 5.53529
5.68470 5.74613 5.77091 5.85972 6.08793 6.10399 6.15335 6.29653
6.38361 6.42652 6.52356 6.70652 6.90453 6.99882 7.12868 7.16282
7.33071 7.42062 7.51652 7.55760 7.82328 7.94169 8.02379 8.32237
8.67143 9.01793 9.64145 11.11916
Molecular weight = 342.14amu
Principal moments of inertia in cm(-1)
A = 0.013847 B = 0.002458 C = 0.002188
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2021.614764 B =11390.846815 C =12796.273777
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.095 3.905
2 N -0.364 5.364
3 C 0.131 3.869
4 C -0.318 4.318
5 C 0.433 3.567
6 O -0.449 6.449
7 C 0.025 3.975
8 O -0.355 6.355
9 C 0.457 3.543
10 O -0.466 6.466
11 C -0.094 4.094
12 C 0.076 3.924
13 H 0.074 0.926
14 C -0.501 4.501
15 H 0.053 0.947
16 C 0.079 3.921
17 N -0.879 5.879
18 Si 0.887 3.113
19 H -0.280 1.280
20 H -0.288 1.288
21 H -0.275 1.275
22 C -0.022 4.022
23 C -0.114 4.114
24 C -0.131 4.131
25 C -0.154 4.154
26 C -0.128 4.128
27 C -0.117 4.117
28 C 0.095 3.905
29 N -0.299 5.299
30 H 0.081 0.919
31 H 0.094 0.906
32 H 0.092 0.908
33 H 0.190 0.810
34 H 0.101 0.899
35 H 0.100 0.900
36 H 0.079 0.921
37 H 0.090 0.910
38 H 0.260 0.740
39 H 0.114 0.886
40 H 0.106 0.894
41 H 0.104 0.896
42 H 0.106 0.894
43 H 0.114 0.886
44 H 0.198 0.802
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -18.574 4.377 -2.327 19.224
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.046 4.046
2 N -0.142 5.142
3 C -0.021 4.021
4 C -0.331 4.331
5 C 0.309 3.691
6 O -0.323 6.323
7 C -0.050 4.050
8 O -0.274 6.274
9 C 0.298 3.702
10 O -0.349 6.349
11 C -0.132 4.132
12 C 0.058 3.942
13 H 0.092 0.908
14 C -0.538 4.538
15 H 0.071 0.929
16 C -0.124 4.124
17 N -0.516 5.516
18 Si 0.715 3.285
19 H -0.206 1.206
20 H -0.214 1.214
21 H -0.200 1.200
22 C -0.023 4.023
23 C -0.132 4.132
24 C -0.149 4.149
25 C -0.172 4.172
26 C -0.146 4.146
27 C -0.135 4.135
28 C -0.093 4.093
29 N -0.119 5.119
30 H 0.099 0.901
31 H 0.113 0.887
32 H 0.111 0.889
33 H 0.207 0.793
34 H 0.119 0.881
35 H 0.118 0.882
36 H 0.098 0.902
37 H 0.108 0.892
38 H 0.070 0.930
39 H 0.132 0.868
40 H 0.124 0.876
41 H 0.122 0.878
42 H 0.124 0.876
43 H 0.132 0.868
44 H 0.214 0.786
Dipole moment (debyes) X Y Z Total
from point charges -19.437 3.448 -2.403 19.886
hybrid contribution 0.699 -0.325 0.950 1.223
sum -18.739 3.123 -1.454 19.053
Atomic orbital electron populations
1.22027 0.73366 1.05125 1.04045 1.48477 1.07415 1.03980 1.54327
1.23202 0.90302 0.93844 0.94752 1.20731 0.93868 0.94364 1.24158
1.21157 0.87989 0.88177 0.71764 1.90552 1.88949 1.16128 1.36666
1.22995 0.86019 0.91168 1.04830 1.86619 1.16543 1.38673 1.85576
1.24100 0.81844 0.91124 0.73133 1.90722 1.83005 1.18791 1.42384
1.21631 0.92598 0.95909 1.03038 1.17917 0.84300 0.91020 1.00996
0.90786 1.20739 1.35501 1.04515 0.93052 0.92853 1.24822 0.94547
0.97232 0.95831 1.69918 1.32720 1.21363 1.27602 0.86677 0.77281
0.80726 0.83776 1.20579 1.21433 1.20006 1.20606 0.97617 0.92654
0.91407 1.20962 0.98183 0.95198 0.98836 1.20976 0.96677 0.99545
0.97735 1.20806 1.00497 1.00216 0.95669 1.20978 0.98534 0.96460
0.98661 1.21072 0.95984 0.97993 0.98458 1.24330 0.95373 0.93937
0.95640 1.77205 1.02139 1.07542 1.24998 0.90070 0.88710 0.88920
0.79333 0.88086 0.88202 0.90244 0.89198 0.93019 0.86769 0.87597
0.87778 0.87602 0.86779 0.78550
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.10 0.35 11.44 59.85 0.68 1.04 16
2 N -0.36 -3.06 3.97 -67.52 -0.27 -3.33 16
3 C 0.13 1.16 11.30 -16.47 -0.19 0.97 16
4 C -0.32 -3.51 6.11 -105.15 -0.64 -4.15 16
5 C 0.43 5.84 7.21 -30.91 -0.22 5.62 16
6 O -0.45 -7.33 17.05 -14.13 -0.24 -7.57 16
7 C 0.03 0.36 5.43 36.01 0.20 0.56 16
8 O -0.36 -6.46 9.75 -45.90 -0.45 -6.91 16
9 C 0.46 9.39 7.71 36.00 0.28 9.66 16
10 O -0.47 -11.04 14.73 -18.75 -0.28 -11.32 16
11 C -0.09 -1.87 5.06 -27.89 -0.14 -2.01 16
12 C 0.08 1.80 1.67 -92.92 -0.16 1.64 16
13 H 0.07 1.97 6.98 -51.93 -0.36 1.61 16
14 C -0.50 -13.19 6.37 -34.44 -0.22 -13.41 16
15 H 0.05 1.40 7.82 -52.49 -0.41 0.99 16
16 C 0.08 2.19 5.45 -17.82 -0.10 2.10 16
17 N -0.88 -25.26 12.87 55.43 0.71 -24.55 16
18 Si 0.89 21.77 29.54 -169.99 -5.02 16.74 16
19 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16
20 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16
21 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16
22 C -0.02 -0.49 4.77 -104.62 -0.50 -0.99 16
23 C -0.11 -2.29 8.86 -39.58 -0.35 -2.65 16
24 C -0.13 -2.36 10.05 -39.58 -0.40 -2.75 16
25 C -0.15 -2.67 10.05 -39.59 -0.40 -3.07 16
26 C -0.13 -2.35 10.05 -39.58 -0.40 -2.75 16
27 C -0.12 -2.44 9.67 -39.59 -0.38 -2.83 16
28 C 0.10 0.98 11.55 -16.90 -0.20 0.78 16
29 N -0.30 -3.24 12.49 30.91 0.39 -2.85 16
30 H 0.08 0.21 8.14 -51.93 -0.42 -0.22 16
31 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16
32 H 0.09 0.12 8.14 -51.93 -0.42 -0.30 16
33 H 0.19 1.16 8.06 -52.48 -0.42 0.74 16
34 H 0.10 1.36 8.13 -51.93 -0.42 0.94 16
35 H 0.10 1.29 8.13 -51.93 -0.42 0.87 16
36 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16
37 H 0.09 1.68 7.77 -51.92 -0.40 1.27 16
38 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16
39 H 0.11 2.22 7.76 -52.49 -0.41 1.81 16
40 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16
41 H 0.10 1.51 8.06 -52.48 -0.42 1.09 16
42 H 0.11 1.66 8.06 -52.48 -0.42 1.24 16
43 H 0.11 2.39 7.95 -52.48 -0.42 1.97 16
44 H 0.20 1.56 8.04 -52.49 -0.42 1.14 16
LS Contribution 390.16 15.07 5.88 5.88
Total: -1.00 -35.22 390.16 -8.19 -43.41
By element:
Atomic # 1 Polarization: 8.51 SS G_CDS: -5.78 Total: 2.73 kcal
Atomic # 6 Polarization: -9.11 SS G_CDS: -3.13 Total: -12.24 kcal
Atomic # 7 Polarization: -31.56 SS G_CDS: 0.83 Total: -30.73 kcal
Atomic # 8 Polarization: -24.84 SS G_CDS: -0.96 Total: -25.80 kcal
Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.74 kcal
Total LS contribution 5.88 Total: 5.88 kcal
Total: -35.22 -8.19 -43.41 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000795980154.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 26.052 kcal
(2) G-P(sol) polarization free energy of solvation -35.224 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.172 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.189 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.413 kcal
(6) G-S(sol) free energy of system = (1) + (5) -17.361 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.62 seconds