Wall clock time and date at job start Sat Apr 11 2020 06:34:19
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46501 * 1
3 3 C 1.34128 * 125.70967 * 2 1
4 4 C 1.38451 * 107.37501 * 179.71462 * 3 2 1
5 5 C 1.46667 * 126.47788 * 180.26059 * 4 3 2
6 6 O 1.21308 * 120.00108 * 0.02562 * 5 4 3
7 7 C 1.50700 * 119.99825 * 180.02562 * 5 4 3
8 8 O 1.45197 * 109.47027 * 180.02562 * 7 5 4
9 9 C 1.34230 * 117.00434 * 179.97438 * 8 7 5
10 10 O 1.20832 * 119.99367 * 359.97438 * 9 8 7
11 11 C 1.50690 * 120.00574 * 179.97438 * 9 8 7
12 12 C 1.53004 * 109.47554 * 179.97438 * 11 9 8
13 13 H 1.08997 * 109.46673 * 54.99880 * 12 11 9
14 14 C 1.50695 * 109.47217 * 295.00097 * 12 11 9
15 15 H 1.08000 * 120.00094 * 325.84124 * 14 12 11
16 16 C 1.37874 * 120.00262 * 145.83725 * 14 12 11
17 17 N 1.31518 * 119.99533 * 6.11429 * 16 14 12
18 18 Si 1.86795 * 120.00193 * 186.11879 * 16 14 12
19 19 H 1.48498 * 109.47651 * 90.00120 * 18 16 14
20 20 H 1.48505 * 109.47103 * 209.99835 * 18 16 14
21 21 H 1.48497 * 109.47060 * 329.99746 * 18 16 14
22 22 C 1.50705 * 109.47168 * 174.99834 * 12 11 9
23 23 C 1.38240 * 119.99678 * 63.46327 * 22 12 11
24 24 C 1.38234 * 119.99518 * 179.78500 * 23 22 12
25 25 C 1.38235 * 119.99954 * 0.44363 * 24 23 22
26 26 C 1.38229 * 120.00097 * 359.80834 * 25 24 23
27 27 C 1.38226 * 119.99845 * 243.73281 * 22 12 11
28 28 C 1.41562 * 107.04779 * 0.26638 * 4 3 2
29 29 N 1.30377 * 107.98170 * 359.97438 * 28 4 3
30 30 H 1.08999 * 109.46756 * 89.99656 * 1 2 3
31 31 H 1.08998 * 109.47311 * 209.99758 * 1 2 3
32 32 H 1.08998 * 109.46732 * 330.00609 * 1 2 3
33 33 H 1.08006 * 126.30979 * 359.97438 * 3 2 1
34 34 H 1.09001 * 109.47131 * 299.99999 * 7 5 4
35 35 H 1.08997 * 109.47393 * 59.99919 * 7 5 4
36 36 H 1.08999 * 109.47064 * 300.00019 * 11 9 8
37 37 H 1.09011 * 109.47104 * 59.99707 * 11 9 8
38 38 H 0.97008 * 119.99419 * 179.97438 * 17 16 14
39 39 H 1.07993 * 119.99949 * 359.97438 * 23 22 12
40 40 H 1.07999 * 119.99696 * 180.27248 * 24 23 22
41 41 H 1.08005 * 119.99656 * 179.83425 * 25 24 23
42 42 H 1.08004 * 120.00074 * 180.02562 * 26 25 24
43 43 H 1.08005 * 120.00357 * 359.97438 * 27 22 12
44 44 H 1.07993 * 126.01058 * 180.02562 * 28 4 3
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.2479 1.0891 0.0000
4 6 3.5621 0.6536 0.0066
5 6 4.7607 1.4988 0.0143
6 8 4.6511 2.7069 0.0159
7 6 6.1286 0.8663 0.0203
8 8 7.1423 1.9058 0.0281
9 6 8.4240 1.5071 0.0347
10 8 8.6900 0.3284 0.0345
11 6 9.5312 2.5293 0.0424
12 6 10.8845 1.8154 0.0495
13 1 10.9358 1.1255 -0.7927
14 6 11.0411 1.0485 1.3373
15 1 10.6203 1.4382 2.2524
16 6 11.7215 -0.1506 1.3472
17 7 12.3364 -0.5667 0.2616
18 14 11.7698 -1.1842 2.9023
19 1 10.6185 -2.1221 2.9095
20 1 13.0376 -1.9566 2.9442
21 1 11.6920 -0.2959 4.0897
22 6 11.9899 2.8332 -0.0667
23 6 12.1710 3.7737 0.9301
24 6 13.1878 4.7044 0.8256
25 6 14.0176 4.7003 -0.2800
26 6 13.8331 3.7631 -1.2792
27 6 12.8191 2.8296 -1.1726
28 6 3.5303 -0.7617 0.0043
29 7 2.2815 -1.1362 -0.0026
30 1 -0.3633 0.0001 -1.0277
31 1 -0.3634 -0.8900 0.5138
32 1 -0.3633 0.8900 0.5137
33 1 1.9145 2.1164 -0.0004
34 1 6.2381 0.2459 0.9098
35 1 6.2474 0.2490 -0.8701
36 1 9.4546 3.1545 -0.8472
37 1 9.4446 3.1521 0.9328
38 1 12.8154 -1.4102 0.2687
39 1 11.5202 3.7794 1.7918
40 1 13.3321 5.4364 1.6064
41 1 14.8102 5.4292 -0.3629
42 1 14.4817 3.7597 -2.1428
43 1 12.6751 2.0973 -1.9533
44 1 4.3894 -1.4160 0.0084
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000795980154.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sat Apr 11 2020 06:34:19
Heat of formation + Delta-G solvation = -36.418283 kcal
Electronic energy + Delta-G solvation = -28202.007189 eV
Core-core repulsion = 24085.796967 eV
Total energy + Delta-G solvation = -4116.210222 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 342.141 amu
Computer time = 0.71 seconds
Orbital eigenvalues (eV)
-42.41380 -41.40700 -40.00611 -39.64994 -37.32062 -35.79842 -34.50871 -33.47105
-31.83653 -31.48110 -30.85123 -29.92488 -27.92502 -27.25180 -24.78334 -23.75414
-23.13263 -22.24923 -21.82843 -20.95041 -20.65114 -18.74808 -18.50148 -18.11661
-17.60496 -17.40640 -17.07951 -16.61344 -16.43225 -16.16670 -15.81167 -15.60875
-15.41132 -15.36182 -15.27421 -14.50556 -14.18207 -13.95362 -13.92311 -13.66344
-13.57641 -13.51040 -13.44968 -13.36683 -13.13887 -12.83448 -12.57140 -12.46285
-12.06043 -11.81871 -11.72111 -11.68143 -11.39264 -11.24271 -10.96181 -10.78219
-10.67259 -10.44940 -9.82078 -9.51643 -9.19284 -8.04974 -6.09090 0.18593
0.80499 0.84461 0.92944 1.36710 1.39115 1.42514 1.48252 1.50287
1.72731 2.02920 2.47061 2.99903 3.19459 3.36164 3.64529 3.74888
4.00585 4.12513 4.16029 4.20522 4.26102 4.26851 4.37813 4.40543
4.40877 4.53211 4.54181 4.57655 4.68933 4.71234 4.74789 4.91903
4.97878 5.14419 5.33326 5.38402 5.47795 5.57021 5.62046 5.78719
5.79792 5.86189 5.95897 6.16190 6.38796 6.39969 6.48024 6.54254
6.98168 7.07031 7.54926 9.04354
Molecular weight = 342.14amu
Principal moments of inertia in cm(-1)
A = 0.013847 B = 0.002458 C = 0.002188
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2021.614764 B =11390.846815 C =12796.273777
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.084 3.916
2 N -0.358 5.358
3 C 0.146 3.854
4 C -0.344 4.344
5 C 0.445 3.555
6 O -0.484 6.484
7 C 0.015 3.985
8 O -0.357 6.357
9 C 0.463 3.537
10 O -0.506 6.506
11 C -0.092 4.092
12 C 0.081 3.919
13 H 0.033 0.967
14 C -0.496 4.496
15 H 0.050 0.950
16 C 0.028 3.972
17 N -0.913 5.913
18 Si 0.936 3.064
19 H -0.283 1.283
20 H -0.287 1.287
21 H -0.265 1.265
22 C -0.047 4.047
23 C -0.127 4.127
24 C -0.127 4.127
25 C -0.146 4.146
26 C -0.128 4.128
27 C -0.140 4.140
28 C 0.094 3.906
29 N -0.327 5.327
30 H 0.096 0.904
31 H 0.098 0.902
32 H 0.122 0.878
33 H 0.218 0.782
34 H 0.110 0.890
35 H 0.113 0.887
36 H 0.102 0.898
37 H 0.105 0.895
38 H 0.256 0.744
39 H 0.116 0.884
40 H 0.140 0.860
41 H 0.143 0.857
42 H 0.133 0.867
43 H 0.097 0.903
44 H 0.210 0.790
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -19.485 6.330 -1.600 20.550
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.055 4.055
2 N -0.135 5.135
3 C -0.008 4.008
4 C -0.357 4.357
5 C 0.324 3.676
6 O -0.361 6.361
7 C -0.059 4.059
8 O -0.275 6.275
9 C 0.306 3.694
10 O -0.392 6.392
11 C -0.129 4.129
12 C 0.063 3.937
13 H 0.051 0.949
14 C -0.534 4.534
15 H 0.068 0.932
16 C -0.172 4.172
17 N -0.552 5.552
18 Si 0.763 3.237
19 H -0.210 1.210
20 H -0.213 1.213
21 H -0.190 1.190
22 C -0.048 4.048
23 C -0.145 4.145
24 C -0.145 4.145
25 C -0.164 4.164
26 C -0.146 4.146
27 C -0.158 4.158
28 C -0.094 4.094
29 N -0.146 5.146
30 H 0.114 0.886
31 H 0.117 0.883
32 H 0.140 0.860
33 H 0.234 0.766
34 H 0.127 0.873
35 H 0.131 0.869
36 H 0.120 0.880
37 H 0.123 0.877
38 H 0.065 0.935
39 H 0.134 0.866
40 H 0.158 0.842
41 H 0.161 0.839
42 H 0.150 0.850
43 H 0.116 0.884
44 H 0.226 0.774
Dipole moment (debyes) X Y Z Total
from point charges -20.394 5.400 -1.666 21.163
hybrid contribution 0.838 -0.857 0.676 1.376
sum -19.556 4.543 -0.990 20.101
Atomic orbital electron populations
1.22464 0.70630 1.06839 1.05588 1.48873 1.08896 1.03161 1.52600
1.23620 0.89592 0.95053 0.92531 1.20558 0.93779 0.94390 1.26958
1.21132 0.88052 0.87824 0.70550 1.90538 1.89190 1.17311 1.39076
1.23371 0.85753 0.90836 1.05966 1.86577 1.16148 1.39865 1.84944
1.24147 0.82712 0.90508 0.72044 1.90707 1.83754 1.20270 1.44431
1.21551 0.90794 0.95793 1.04802 1.17691 0.86946 0.91097 0.98014
0.94908 1.21017 1.33892 1.04595 0.93923 0.93186 1.25477 0.95017
0.98617 0.98077 1.70048 1.34335 1.21620 1.29213 0.85904 0.76914
0.79492 0.81432 1.20979 1.21346 1.18952 1.20464 0.97678 0.93670
0.92988 1.21061 0.99418 0.95673 0.98390 1.21365 0.95367 0.99088
0.98696 1.21270 1.00672 0.99969 0.94495 1.21289 0.97725 0.95624
0.99995 1.21104 0.97405 0.99012 0.98304 1.24575 0.95845 0.93916
0.95037 1.77164 1.02517 1.09061 1.25902 0.88570 0.88342 0.85955
0.76592 0.87262 0.86918 0.87998 0.87673 0.93543 0.86641 0.84234
0.83900 0.84951 0.88444 0.77363
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.08 0.39 11.44 127.77 1.46 1.85 16
2 N -0.36 -5.30 3.97 -367.52 -1.46 -6.76 16
3 C 0.15 2.30 11.30 84.39 0.95 3.26 16
4 C -0.34 -7.31 6.11 -20.21 -0.12 -7.44 16
5 C 0.45 11.96 7.21 27.89 0.20 12.17 16
6 O -0.48 -15.76 17.05 15.68 0.27 -15.49 16
7 C 0.02 0.44 5.43 71.24 0.39 0.83 16
8 O -0.36 -13.16 9.75 -45.06 -0.44 -13.60 16
9 C 0.46 19.51 7.71 71.23 0.55 20.06 16
10 O -0.51 -24.89 14.73 21.95 0.32 -24.56 16
11 C -0.09 -3.72 5.06 29.85 0.15 -3.57 16
12 C 0.08 3.97 1.67 -12.28 -0.02 3.95 16
13 H 0.03 1.85 6.98 -2.39 -0.02 1.83 16
14 C -0.50 -26.81 6.37 25.60 0.16 -26.65 16
15 H 0.05 2.66 7.82 -2.91 -0.02 2.64 16
16 C 0.03 1.57 5.45 84.65 0.46 2.03 16
17 N -0.91 -54.62 12.87 21.45 0.28 -54.34 16
18 Si 0.94 45.51 29.54 68.60 2.03 47.54 16
19 H -0.28 -13.82 7.11 99.48 0.71 -13.12 16
20 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16
21 H -0.27 -12.31 7.11 99.48 0.71 -11.61 16
22 C -0.05 -2.11 4.77 -19.87 -0.09 -2.21 16
23 C -0.13 -5.00 8.86 22.27 0.20 -4.81 16
24 C -0.13 -4.18 10.05 22.27 0.22 -3.95 16
25 C -0.15 -4.55 10.05 22.27 0.22 -4.33 16
26 C -0.13 -4.47 10.05 22.27 0.22 -4.25 16
27 C -0.14 -5.94 9.67 22.27 0.22 -5.72 16
28 C 0.09 1.88 11.55 85.73 0.99 2.87 16
29 N -0.33 -6.73 12.49 -56.13 -0.70 -7.43 16
30 H 0.10 0.22 8.14 -2.39 -0.02 0.20 16
31 H 0.10 0.43 8.14 -2.39 -0.02 0.41 16
32 H 0.12 -0.13 8.14 -2.39 -0.02 -0.15 16
33 H 0.22 2.07 8.06 -2.91 -0.02 2.04 16
34 H 0.11 3.01 8.13 -2.39 -0.02 2.99 16
35 H 0.11 2.99 8.13 -2.39 -0.02 2.97 16
36 H 0.10 3.62 8.14 -2.39 -0.02 3.60 16
37 H 0.11 3.91 7.77 -2.38 -0.02 3.89 16
38 H 0.26 14.78 8.31 -92.70 -0.77 14.01 16
39 H 0.12 4.39 7.76 -2.91 -0.02 4.37 16
40 H 0.14 3.62 8.06 -2.91 -0.02 3.59 16
41 H 0.14 3.37 8.06 -2.91 -0.02 3.35 16
42 H 0.13 3.82 8.06 -2.91 -0.02 3.80 16
43 H 0.10 4.33 7.95 -2.91 -0.02 4.30 16
44 H 0.21 3.31 8.04 -2.91 -0.02 3.28 16
Total: -1.00 -78.73 390.16 7.47 -71.26
By element:
Atomic # 1 Polarization: 18.30 SS G_CDS: 1.01 Total: 19.31 kcal
Atomic # 6 Polarization: -22.09 SS G_CDS: 6.16 Total: -15.92 kcal
Atomic # 7 Polarization: -66.65 SS G_CDS: -1.89 Total: -68.54 kcal
Atomic # 8 Polarization: -53.80 SS G_CDS: 0.15 Total: -53.65 kcal
Atomic # 14 Polarization: 45.51 SS G_CDS: 2.03 Total: 47.54 kcal
Total: -78.73 7.47 -71.26 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000795980154.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 34.845 kcal
(2) G-P(sol) polarization free energy of solvation -78.731 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.886 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.467 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.264 kcal
(6) G-S(sol) free energy of system = (1) + (5) -36.418 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.71 seconds